Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Reverse (-)

5602764 .. 5604232

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTCTGCAGAATATGCAAAATCAGAATATGAATTTGGTTTTGTCCACTGATGCAAAGCCTAGGCTAAAATGGACTCCAGAACTTCATCAGAGATTTGTTGAAGCAGTCAATCAGCTTGGAGGTGCAGACAAGGCCACACCAAAGACCCTGATGAGGGTGATGGGAATTCATGGACTCACTCTGTACCACCTAAAGAGCCATTTACAGAAATATAGGCTAGGGAAAAGCCAACAATCAGGAAATTGCAGTGACAGTTTGCAAGAAGATTACAAAGAGATTCAGAGCAGTGATGGCCATTTCTGCACAGATATCAATGATGAAACTCAAAGCCGGATAAATGAAAGCGCCCAGATAGCTCAGTCTCTCCGATTGCAAATGGAAGTGCAGAGGAAACTACATGAGCAAATAGAGGTGCAGAGACATCTTCAGTTACGAATCGAAGCTCAAGGGAAGTATTTACAAACAGTACTAAAGAAAGCACAGGAAACTCTTTCTGGGTATAATTCTTCATCAGTGGGTGTAGAACTTGCAAAGGCTGAAATCTCTCAGTTAGTTTCAATGGTCAACAATGGCTGCCCCAGTTCTTCATTCTCAGAGTTGACGGAAACAGGAACTCTAACCCTAAAAGACATTGAAAGGAAGCAAATTAGAGGCACAATTTGTTCAATGGAAAGTTCCCTCACATCTTCTGAAAGCTCAGGGAGAAAGGAAGAAAAGTCTAATACAACCTGTGTAGAACTACCATTAATGGAAATTCACCCAGAAGTGAAGTCATTGAATAATGTTACAAGCAACAATCAAAATCACGGGATTGGGAGGAAGAGAAGTATAAGCAGTTCCATTTCTGATGGGATGTGTGTCGAGCAACCAGTTGCTAAAAGATCATCAGCAACACACAGAGATAAAAGTGGCAACCATCTGAGATTTGTCACAATTGATTTGAATAGCAAGTATCAGAATGACATTGATTCTGGTTCAAAAGTACTAGACTTGAATTCCAAGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.55

Weight (kDa)

8.43

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 73	7.5e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	118 - 164	1.2e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	5 cut(s)	34, 168, 756, 997, 1008
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	188, 471, 987
AfiI	CCNNNNNNNGG	2 cut(s)	156, 157
AgsI	TTSAA	8 cut(s)	104, 561, 638, 669, 781, 946, 981, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	4 cut(s)	118, 359, 446, 699
AluI	AGCT	4 cut(s)	118, 359, 446, 699
Alw26I	GTCTC	2 cut(s)	369, 415
AoxI	GGCC	2 cut(s)	135, 295
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	5 cut(s)	34, 168, 756, 997, 1008
AseI	ATTAAT	1 cut(s)	749
AspA2I	CCTAGG	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	172, 752
AvrII	CCTAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	4 cut(s)	157, 287, 845, 927
BcoDI	GTCTC	2 cut(s)	369, 415
BfaI	CTAG	3 cut(s)	63, 221, 989
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	1 cut(s)	577
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	2 cut(s)	471, 987
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	62, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 157
Bse1I	ACTGG	2 cut(s)	582, 872
BseDI	CCNNGG	2 cut(s)	62, 1002
BseGI	GGATG	1 cut(s)	861
BseLI	CCNNNNNNNGG	2 cut(s)	156, 157
BseMII	CTCAG	5 cut(s)	374, 563, 609, 714, 914
BseNI	ACTGG	2 cut(s)	582, 872
BseXI	GCAGC	1 cut(s)	563
BsgI	GTGCAG	4 cut(s)	147, 289, 407, 437
BshFI	GGCC	2 cut(s)	137, 297
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	156, 157
BsmAI	GTCTC	2 cut(s)	369, 415
BsnI	GGCC	2 cut(s)	137, 297
Bsp143I	GATC	1 cut(s)	884
BspANI	GGCC	2 cut(s)	137, 297
BspCNI	CTCAG	5 cut(s)	373, 562, 608, 713, 915
BspMAI	CTGCAG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	582, 872
BssECI	CCNNGG	2 cut(s)	62, 1002
BssMI	GATC	1 cut(s)	884
BssT1I	CCWWGG	2 cut(s)	62, 1002
Bst4CI	ACNGT	2 cut(s)	257, 469
Bst6I	CTCTTC	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstDEI	CTNAG	5 cut(s)	360, 549, 595, 700, 923
BstF5I	GGATG	1 cut(s)	861
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	887
BstMAI	GTCTC	2 cut(s)	369, 415
BstMBI	GATC	1 cut(s)	884
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
BstSFI	CTRYAG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	137, 297
BtsCI	GGATG	1 cut(s)	861
BtsI	GCAGTG	2 cut(s)	256, 295
BtsIMutI	CAGTG	4 cut(s)	48, 256, 295, 522
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	187, 470, 986
CviAII	CATG	2 cut(s)	173, 401
CviQI	GTAC	3 cut(s)	187, 470, 986
DdeI	CTNAG	5 cut(s)	360, 549, 595, 700, 923
DpnI	GATC	1 cut(s)	886
DpnII	GATC	1 cut(s)	884
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
Eco130I	CCWWGG	2 cut(s)	62, 1002
Eco32I	GATATC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	413
EcoRI	GAATTC	2 cut(s)	168, 997
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	62, 1002
ErhI	CCWWGG	2 cut(s)	62, 1002
FaeI	CATG	2 cut(s)	176, 404
FaiI	YATR	7 cut(s)	17, 32, 174, 216, 402, 504, 833
FatI	CATG	2 cut(s)	172, 400
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	868
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	3 cut(s)	63, 221, 989
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	577
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	137, 297
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	176, 404
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	568, 603
HindII	GTYRAC	2 cut(s)	568, 603
HinfI	GANTC	5 cut(s)	76, 177, 280, 438, 971
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	172, 752
Hpy166II	GTNNAC	3 cut(s)	48, 568, 603
Hpy188I	TCNGA	9 cut(s)	27, 93, 285, 371, 598, 694, 850, 924, 960
Hpy188III	TCNNGA	2 cut(s)	80, 240
Hpy8I	GTNNAC	3 cut(s)	48, 568, 603
HpyCH4III	ACNGT	2 cut(s)	257, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
HpyF3I	CTNAG	5 cut(s)	360, 549, 595, 700, 923
Hsp92II	CATG	2 cut(s)	176, 404
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	884
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	3 cut(s)	63, 221, 989
MaeIII	GTNAC	4 cut(s)	251, 432, 787, 931
MalI	GATC	1 cut(s)	886
MboI	GATC	1 cut(s)	884
MboII	GAAGA	7 cut(s)	278, 419, 501, 579, 681, 725, 835
MfeI	CAATTG	1 cut(s)	936
MlsI	TGGCCA	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	70, 171
MnlI	CCTC	7 cut(s)	116, 150, 384, 406, 647, 692, 813
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	2 cut(s)	749, 1012
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	936
MwoI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
NdeII	GATC	1 cut(s)	884
NlaIII	CATG	2 cut(s)	176, 404
NmuCI	GTSAC	2 cut(s)	251, 931
PfeI	GAWTC	3 cut(s)	280, 438, 971
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	2 cut(s)	70, 171
PpsI	GAGTC	2 cut(s)	70, 171
PshBI	ATTAAT	1 cut(s)	749
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	188, 471, 987
RsaNI	GTAC	3 cut(s)	187, 470, 986
SaqAI	TTAA	2 cut(s)	749, 1012
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	1 cut(s)	884
ScaI	AGTACT	2 cut(s)	471, 987
SchI	GAGTC	2 cut(s)	70, 171
SetI	ASST	8 cut(s)	120, 127, 195, 361, 417, 448, 701, 734
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
SspMI	CTAG	3 cut(s)	63, 221, 989
StyI	CCWWGG	2 cut(s)	62, 1002
TaaI	ACNGT	2 cut(s)	257, 469
TaqI	TCGA	2 cut(s)	441, 864
TatI	WGTACW	2 cut(s)	469, 985
TfiI	GAWTC	3 cut(s)	280, 438, 971
Tru1I	TTAA	2 cut(s)	749, 1012
Tru9I	TTAA	2 cut(s)	749, 1012
TscAI	CASTG	4 cut(s)	55, 256, 295, 522
TseFI	GTSAC	2 cut(s)	251, 931
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	2 cut(s)	251, 931
TspDTI	ATGAA	7 cut(s)	47, 77, 161, 336, 357, 501, 579
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	4 cut(s)	55, 256, 295, 522
VspI	ATTAAT	1 cut(s)	749
XapI	RAATTY	5 cut(s)	34, 168, 756, 997, 1008
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	63, 221, 989
ZrmI	AGTACT	2 cut(s)	471, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.