Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

4986662 .. 4987729

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1070900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAGTGCAGAGGAAACTTCATGAACAAATTGAGGTGCAGAGACATCTTCAGCTGAGAATTGAAGCTCAAGGGAAGTATTTACAATCGGTATTGAAGAAAGCGCAAGAAACTCTTTCAGGGTATAGTTCTTCTTCAGTGGGAGTAGAACTTGCAAAGGCTGAACTCACCCAGCTGGTTTCAATGGTTAACAATGGATGTCCGAGTTCTTCGTTCTCAGAGTTAACAGAAACAGGAACTTCAACCCTAAAAGACGTGGAGCGGAAGCAAATGAGAGGCTCCATGGACAGTTCCTTGACATCTTCCGAAAGTTCAGGAAGGAAGGAGGAAAAGCTCCCTAAAAATTCTAATGCAACCTGTGTTGAACTACCATTAATGGGCATCCACCCGGACAATAAGGCATGGAATAATTCAGCAAGCAATCATGTTTTTGGGAGCAAGAGAAGCAGCAGTCCGATTTCTGACGGTGTATCTGTAAAGCAACCAGTTGCTAAAAGAACACAAACACAAAGAGATAAGGGTGGAAACCATCTGAGAAAGTCTGGATTGTTGGCTACTTTTGATCTGAATAGCAAATATCAGAGTGACAACATTGATTCGGGACCGAAAGTAATAGACTTGAACTGCAAGGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

213

Amino Acids

23.18

Weight (kDa)

9.22

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	1 - 38	1.4e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	35, 120
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	65, 97, 183, 243, 365, 622
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	4 cut(s)	55, 68, 175, 334
AluI	AGCT	4 cut(s)	55, 68, 175, 334
Alw26I	GTCTC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	602
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	448
BlsI	GCNGC	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	280, 603
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	203, 381
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	3 cut(s)	47, 231, 524
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	459
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	2 cut(s)	29, 59
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	3 cut(s)	48, 230, 525
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	280, 603
BsrBI	CCGCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	290, 467
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	56, 217, 533
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	203, 381
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	203, 381
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	602
CviAII	CATG	4 cut(s)	23, 283, 402, 425
CviJI	RGCY	7 cut(s)	55, 68, 161, 175, 279, 334, 554
CviKI_1	RGCY	7 cut(s)	55, 68, 161, 175, 279, 334, 554
DdeI	CTNAG	3 cut(s)	56, 217, 533
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	2 cut(s)	35, 120
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	26, 286, 405, 428
FaiI	YATR	5 cut(s)	24, 126, 284, 403, 426
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	4 cut(s)	22, 282, 401, 424
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	2 cut(s)	210, 368
Fsp4HI	GCNGC	1 cut(s)	448
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	448
GsaI	CCCAGC	1 cut(s)	175
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	26, 286, 405, 428
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	190, 225
HindII	GTYRAC	2 cut(s)	190, 225
HinfI	GANTC	2 cut(s)	596, 633
HpaI	GTTAAC	2 cut(s)	190, 225
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	190, 225
Hpy188I	TCNGA	9 cut(s)	204, 220, 307, 456, 463, 534, 567, 582, 638
Hpy188III	TCNNGA	4 cut(s)	23, 315, 543, 600
Hpy8I	GTNNAC	2 cut(s)	190, 225
HpyAV	CCTTC	2 cut(s)	312, 316
HpyCH4III	ACNGT	2 cut(s)	290, 467
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	10, 40, 155, 353, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	3 cut(s)	56, 217, 533
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	26, 286, 405, 428
HspAI	GCGC	1 cut(s)	104
KspAI	GTTAAC	2 cut(s)	190, 225
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	4 cut(s)	259, 284, 339, 435
LpnPI	CCDG	9 cut(s)	105, 161, 185, 219, 300, 370, 402, 498, 528
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	1 cut(s)	390
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	1 cut(s)	564
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	1 cut(s)	562
MboII	GAAGA	6 cut(s)	41, 109, 123, 126, 201, 294
MluCI	AATT	4 cut(s)	30, 60, 343, 409
MnlI	CCTC	4 cut(s)	6, 28, 269, 319
MseI	TTAA	3 cut(s)	189, 224, 374
MspA1I	CMGCKG	2 cut(s)	55, 175
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	4 cut(s)	26, 286, 405, 428
NlaIV	GGNNCC	2 cut(s)	280, 603
NmuCI	GTSAC	1 cut(s)	584
PagI	TCATGA	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	596, 633
PkrI	GCNGC	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	280, 603
PspPI	GGNCC	1 cut(s)	602
PvuII	CAGCTG	2 cut(s)	55, 175
SaqAI	TTAA	3 cut(s)	189, 224, 374
SatI	GCNGC	1 cut(s)	448
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	7 cut(s)	39, 57, 70, 177, 258, 336, 359
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	4 cut(s)	30, 60, 343, 409
SsiI	CCGC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	290, 467
TaiI	ACGT	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	619
TasI	AATT	4 cut(s)	30, 60, 343, 409
TfiI	GAWTC	2 cut(s)	596, 633
Tru1I	TTAA	3 cut(s)	189, 224, 374
Tru9I	TTAA	3 cut(s)	189, 224, 374
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	11, 39
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	374
XapI	RAATTY	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.