Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Reverse (-)

28124969 .. 28127186

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTCTGCTGCAGAATATGCAAAATCAGAATATGAATTTGGTTTTGTCCACTGATGCAAAGCCCAGGCTAAAATGGACTCCAGAACTTCATCAAAGATTTGTTGAAGCAGTCACTCAGCTTGGAGGGGCAGACAAGGCCACACCAAAGAGTTTGATGAGGGTGATGGGAATTCATGGACTCACTCTGTACCACCTAAAGAGCCACTTACAGAAATACAGGCTAGGGAAAAGCCAACAGTCAGAAAACTGCACTGACATTAAGCAAGAAGATTACAAAGAGATTCAGAGCAGTGATGATCATTTCGACACGGATATCAGTGATGAAACTCACTGTCAGATTAATGAAAGCTTGCAGATAGCCGAGTCTCTCCAATTGCAAATGGAAGTGCAGAGGAAACTTCATGAACAAATTGAGGTGCAGAGACATCTTCAGCTAAGAATTGAAGCTCAAGGGAAGTATTTACAAACAGTATTAAAGAAAGCACAAGAAACTCTTTCTGGGTATGGTTCTTCTTCAGTGGGAGTAGAACTAGCAAAGGCTGAACTCACTCAGTTAGTCTCAATGGTTAACAATGGATGTCCCAGTTCTTCATTCTCAGAATTAACTGAAACAGGAACTTCAAGCCTAAAATACGTAGAGAGGAAACAAATGAGAGGCTCCATGGAAAGTTCCTTGACATCTTCTGAAAGTTCAGGAAGGAAGGAAGAGAAGCAACCAATGCATAAGCATGGTGGTGATCCTGAAAAGTCTAATACAACCTGTGTGGAGCTACCATTGATGGACATCCACCCAGAAAATAAGCCATGGAATAATGTTACAAACAGTCATGTTATTGGGAGGAAGAGAAGCAGCAGTCCCATTTCTGATGGTATCTGTGTTGAGCAACCAATTTCTAAAAGGACACCAACACAAAGGGACAAAAGTGGCCAGCATCTGAGAAAGTCTGGATTATTGGACACAATTGATCTGAACAGAAAATATCAGAATGACATTGATTCTGGTCCAAAAGTAATAGACTTGAATTGCAAGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

347

Amino Acids

38.91

Weight (kDa)

7.21

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	3 cut(s)	37, 171, 1035
AcuI	CTGAAG	2 cut(s)	416, 501
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	107, 446, 624, 1024
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	121, 351, 436, 449, 772
AluI	AGCT	5 cut(s)	121, 351, 436, 449, 772
Alw26I	GTCTC	3 cut(s)	372, 418, 565
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	937
AoxI	GGCC	2 cut(s)	138, 928
ApeKI	GCWGC	2 cut(s)	10, 852
ApoI	RAATTY	3 cut(s)	37, 171, 1035
AseI	ATTAAT	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	1004
AsuHPI	GGTGA	2 cut(s)	175, 749
AvaII	GGWCC	1 cut(s)	1004
BalI	TGGCCA	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	3 cut(s)	160, 775, 863
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	372, 418, 565
BfaI	CTAG	2 cut(s)	224, 533
BfmI	CTRYAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	11, 853
BlsI	GCNGC	2 cut(s)	12, 854
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	1004
BmgT120I	GGNCC	1 cut(s)	1004
BmiI	GGNNCC	1 cut(s)	661
BmrFI	CCNGG	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	2 cut(s)	46, 943
BmuI	ACTGGG	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	785
BsaJI	CCNNGG	3 cut(s)	65, 663, 806
Bse1I	ACTGG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	785
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	65, 663, 806
BseGI	GGATG	2 cut(s)	584, 786
BseJI	GATNNNNATC	1 cut(s)	785
BseMII	CTCAG	4 cut(s)	131, 566, 612, 929
BseNI	ACTGG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	864
BsgI	GTGCAG	3 cut(s)	235, 410, 440
BshFI	GGCC	2 cut(s)	140, 930
BslFI	GGGAC	3 cut(s)	567, 843, 932
BsmAI	GTCTC	3 cut(s)	372, 418, 565
BsmFI	GGGAC	3 cut(s)	567, 843, 932
BsnI	GGCC	2 cut(s)	140, 930
Bsp143I	GATC	3 cut(s)	298, 739, 967
Bsp19I	CCATGG	2 cut(s)	663, 806
BspANI	GGCC	2 cut(s)	140, 930
BspCNI	CTCAG	4 cut(s)	130, 565, 611, 930
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	661
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	65, 663, 806
BssMI	GATC	3 cut(s)	298, 739, 967
BssT1I	CCWWGG	2 cut(s)	663, 806
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	240, 335, 472, 827
Bst6I	CTCTTC	2 cut(s)	702, 839
BstAPI	GCANNNNNTGC	2 cut(s)	19, 721
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	353, 932
BstDEI	CTNAG	5 cut(s)	117, 437, 552, 598, 938
BstDSI	CCRYGG	2 cut(s)	663, 806
BstF5I	GGATG	2 cut(s)	584, 786
BstKTI	GATC	3 cut(s)	301, 742, 970
BstMAI	GTCTC	3 cut(s)	372, 418, 565
BstMBI	GATC	3 cut(s)	298, 739, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 137, 721
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	11
BstSNI	TACGTA	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	140, 930
BtgI	CCRYGG	2 cut(s)	663, 806
BtsCI	GGATG	2 cut(s)	584, 786
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	6 cut(s)	51, 252, 298, 325, 331, 525
Cac8I	GCNNGC	2 cut(s)	353, 932
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	1004
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviAII	CATG	6 cut(s)	176, 404, 664, 731, 807, 830
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	5 cut(s)	117, 437, 552, 598, 938
DpnI	GATC	3 cut(s)	300, 741, 969
DpnII	GATC	3 cut(s)	298, 739, 967
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	702, 839
EarI	CTCTTC	2 cut(s)	702, 839
Eco105I	TACGTA	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	663, 806
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	1004
Eco57I	CTGAAG	2 cut(s)	416, 501
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	663, 806
EcoT22I	ATGCAT	1 cut(s)	726
ErhI	CCWWGG	2 cut(s)	663, 806
FaeI	CATG	6 cut(s)	179, 407, 667, 734, 810, 833
FalI	AAGNNNNNCTT	4 cut(s)	191, 223, 480, 512
FaqI	GGGAC	3 cut(s)	567, 843, 932
FatI	CATG	6 cut(s)	175, 403, 663, 730, 806, 829
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	11, 853
FokI	GGATG	2 cut(s)	591, 773
Fsp4HI	GCNGC	2 cut(s)	11, 853
FspBI	CTAG	2 cut(s)	224, 533
GluI	GCNGC	2 cut(s)	11, 853
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	140, 930
Hin1II	CATG	6 cut(s)	179, 407, 667, 734, 810, 833
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	5 cut(s)	79, 180, 283, 365, 998
HpaI	GTTAAC	1 cut(s)	571
HphI	GGTGA	2 cut(s)	175, 749
Hpy166II	GTNNAC	2 cut(s)	51, 571
Hpy188III	TCNNGA	5 cut(s)	83, 404, 696, 743, 948
Hpy8I	GTNNAC	2 cut(s)	51, 571
HpyAV	CCTTC	2 cut(s)	693, 697
HpyCH4III	ACNGT	4 cut(s)	240, 335, 472, 827
HpyCH4IV	ACGT	1 cut(s)	636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 137, 721
HpyF3I	CTNAG	5 cut(s)	117, 437, 552, 598, 938
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	6 cut(s)	179, 407, 667, 734, 810, 833
Ksp22I	TGATCA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	298, 739, 967
LmnI	GCTCC	2 cut(s)	665, 769
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	2 cut(s)	46, 943
MaeI	CTAG	2 cut(s)	224, 533
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	2 cut(s)	112, 817
MalI	GATC	3 cut(s)	300, 741, 969
MboI	GATC	3 cut(s)	298, 739, 967
MboII	GAAGA	8 cut(s)	281, 422, 504, 507, 582, 675, 719, 856
MfeI	CAATTG	2 cut(s)	374, 963
MlsI	TGGCCA	1 cut(s)	930
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	3 cut(s)	73, 174, 374
MnlI	CCTC	7 cut(s)	119, 153, 387, 409, 636, 650, 834
Mox20I	TGGCCA	1 cut(s)	930
Mph1103I	ATGCAT	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	930
MseI	TTAA	6 cut(s)	261, 342, 476, 570, 605, 1039
MslI	CAYNNNNRTG	2 cut(s)	729, 735
Msp20I	TGGCCA	1 cut(s)	930
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	2 cut(s)	374, 963
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	19, 137, 721
NcoI	CCATGG	2 cut(s)	663, 806
NdeII	GATC	3 cut(s)	298, 739, 967
NlaIII	CATG	6 cut(s)	179, 407, 667, 734, 810, 833
NlaIV	GGNNCC	1 cut(s)	661
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	726
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	283, 998
PkrI	GCNGC	2 cut(s)	12, 854
PleI	GAGTC	3 cut(s)	73, 174, 373
PpsI	GAGTC	3 cut(s)	73, 174, 373
Ppu21I	YACGTR	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	661
PspPI	GGNCC	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	937
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	729, 735
SaqAI	TTAA	6 cut(s)	261, 342, 476, 570, 605, 1039
SatI	GCNGC	2 cut(s)	11, 853
Sau3AI	GATC	3 cut(s)	298, 739, 967
Sau96I	GGNCC	1 cut(s)	1004
SchI	GAGTC	3 cut(s)	73, 174, 374
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	9 cut(s)	123, 198, 353, 420, 438, 451, 639, 764, 774
SfaNI	GCATC	2 cut(s)	46, 943
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	1004
SmiMI	CAYNNNNRTG	2 cut(s)	729, 735
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SnaBI	TACGTA	1 cut(s)	637
SspMI	CTAG	2 cut(s)	224, 533
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	663, 806
TaaI	ACNGT	4 cut(s)	240, 335, 472, 827
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	283, 998
Tru1I	TTAA	6 cut(s)	261, 342, 476, 570, 605, 1039
Tru9I	TTAA	6 cut(s)	261, 342, 476, 570, 605, 1039
TscAI	CASTG	6 cut(s)	58, 259, 298, 325, 338, 525
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	10, 852
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	8 cut(s)	50, 80, 164, 339, 360, 392, 420, 582
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	6 cut(s)	58, 259, 298, 325, 338, 525
VpaK11BI	GGWCC	1 cut(s)	1004
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	3 cut(s)	37, 171, 1035
XspI	CTAG	2 cut(s)	224, 533
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.