Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

5032839 .. 5035034

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1071600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTTCTGCAGAATATGCAAAATCAGAACATGAATTTGGTTTTGTCCACCGACGCGAAGCCGCGGCTAAAGTGGACTCCAGAGCTTCATCAGCGATTCGTCGAGGCTGTTAATCAGCTCGGAGGGGCAGACAAGGCCACACCAAAGAGTTTGATGAGGATGATGGGAATTCATGGACTCACTTTGTACCACCTAAAGAGCCACTTACAGAAATACAGGCTAGGGAAAAGCCAACAATCCGAAAACTGCGCTGACATTAGGCAAGAAGATTACAAGGAGCTTCAGAGCAGTGATGGTCATTTCGGTGCGGATATCAGCGATGAAGATCACAGTCAGATTAATGAAAGCTTGCAGATAGCTCGGTCTCTCCAGTTGCAAATGGAAGTGCAGAGGCAGCTTCATGAACAAATTGAGGTGCAGAGACATCTTCAGCTGAGAATTGAAGCTCAAGGGAAGTATTTACAATCGGTGTTGAAGAAAGCACAAGAAACTCTTTCAGGGTATACTTCTTCTTCAGTGGGAGTAGAACTTGCAAAGGCTGAACTCACTCAGCTAGTTTCAATGGTTAACAATGGATGTCCGAGTTCTTCGTTCTCAGAGTTAACGGAAACAGGAACTCCAACCCTAAAAGACGTGGAGCGGAAGCAAATGAGAGGCTCCATGGAGAGTTCCTTGACATCTTCCGAACGTTCAGGAAGGGAGGACGAGAAGCTCCCTGAAAATTCTAATGCCACCTGTGTTGAACTACCATTAATGGACATTCACCCGGACAATAAGGCGTGGAATAATGTTGCAAATAATCATGTTTTTGGGAGGAAGAGAAGCGGCAGTCCGATTTCTGAAGGTGTATCTGTGGAGCAACCAGTTGCTAAAAGGACACAAACACAACGAGATAAAGGTGGAAACAATCTGAGAAAGTCTGGATTGTTGGCTACAATTGATCTGAATAGAAAATATCAGAGTGACAACATTGATTCGGGACCGAAAGCAATAGACTTGAACTGCAAGGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.8

Weight (kDa)

7.16

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 73	2.4e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	117 - 164	9.8e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	2 cut(s)	56, 64
AciI	CCGC	5 cut(s)	62, 64, 308, 640, 825
AclI	AACGTT	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	34, 168, 721
AcuI	CTGAAG	4 cut(s)	266, 413, 498, 861
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	443, 475, 561, 743, 1000
AjiI	CACGTC	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
Alw26I	GTCTC	2 cut(s)	369, 415
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	3 cut(s)	34, 168, 721
AseI	ATTAAT	2 cut(s)	339, 752
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	980
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	157, 287
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	2 cut(s)	369, 415
BfaI	CTAG	2 cut(s)	221, 554
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	4 cut(s)	62, 65, 395, 826
BlsI	GCNGC	4 cut(s)	63, 66, 396, 827
Bme1390I	CCNGG	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	980
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	2 cut(s)	658, 981
BmrFI	CCNGG	1 cut(s)	767
BpmI	CTGGAG	2 cut(s)	63, 353
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	62, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bse1I	ACTGG	2 cut(s)	370, 863
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	62, 660
BseGI	GGATG	2 cut(s)	165, 581
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	4 cut(s)	425, 563, 609, 902
BseNI	ACTGG	2 cut(s)	370, 863
BseXI	GCAGC	1 cut(s)	406
BsgI	GTGCAG	2 cut(s)	407, 437
Bsh1236I	CGCG	2 cut(s)	56, 64
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	993
BsmAI	GTCTC	2 cut(s)	369, 415
BsmFI	GGGAC	1 cut(s)	993
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	325, 940
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	5 cut(s)	62, 64, 308, 640, 825
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	4 cut(s)	426, 562, 608, 903
BspFNI	CGCG	2 cut(s)	56, 64
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	658, 981
BspMAI	CTGCAG	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	370, 863
BssECI	CCNNGG	2 cut(s)	62, 660
BssMI	GATC	2 cut(s)	325, 940
BssNAI	GTATAC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	660
Bst1107I	GTATAC	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	434, 549, 595, 911
BstDSI	CCRYGG	2 cut(s)	62, 660
BstF5I	GGATG	2 cut(s)	165, 581
BstFNI	CGCG	2 cut(s)	56, 64
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	328, 943
BstMAI	GTCTC	2 cut(s)	369, 415
BstMBI	GATC	2 cut(s)	325, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 91, 134, 394
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	2 cut(s)	56, 64
BstV1I	GCAGC	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	2 cut(s)	62, 660
BtgZI	GCGATG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	165, 581
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 522
Cac8I	GCNNGC	1 cut(s)	350
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	980
Cfr42I	CCGCGG	1 cut(s)	65
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	5 cut(s)	31, 173, 401, 661, 803
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	434, 549, 595, 911
DpnI	GATC	2 cut(s)	327, 942
DpnII	GATC	2 cut(s)	325, 940
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	4 cut(s)	266, 413, 498, 861
EcoRI	GAATTC	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	34, 176, 404, 664, 806
FaiI	YATR	7 cut(s)	17, 32, 174, 402, 504, 662, 804
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 477, 509
FaqI	GGGAC	1 cut(s)	993
FatI	CATG	5 cut(s)	30, 172, 400, 660, 802
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	4 cut(s)	62, 65, 395, 826
FokI	GGATG	2 cut(s)	172, 588
Fsp4HI	GCNGC	4 cut(s)	62, 65, 395, 826
FspBI	CTAG	2 cut(s)	221, 554
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	62, 65, 395, 826
GsuI	CTGGAG	2 cut(s)	63, 353
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	767
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	5 cut(s)	34, 176, 404, 664, 806
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	568, 603
HindII	GTYRAC	2 cut(s)	568, 603
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	5 cut(s)	76, 96, 177, 974, 1011
HpaI	GTTAAC	2 cut(s)	568, 603
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	5 cut(s)	48, 75, 504, 568, 603
Hpy188III	TCNNGA	5 cut(s)	80, 401, 693, 921, 978
Hpy8I	GTNNAC	5 cut(s)	48, 75, 504, 568, 603
Hpy99I	CGWCG	2 cut(s)	56, 104
HpyAV	CCTTC	2 cut(s)	690, 836
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	633, 688
HpyCH4V	TGCA	9 cut(s)	10, 19, 352, 376, 388, 418, 533, 794, 1005
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 91, 134, 394
HpyF3I	CTNAG	4 cut(s)	434, 549, 595, 911
HpySE526I	ACGT	2 cut(s)	633, 688
Hsp92II	CATG	5 cut(s)	34, 176, 404, 664, 806
HspAI	GCGC	1 cut(s)	249
KspAI	GTTAAC	2 cut(s)	568, 603
KspI	CCGCGG	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	325, 940
LmnI	GCTCC	5 cut(s)	277, 637, 662, 717, 856
Lsp1109I	GCAGC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	221, 554
MaeII	ACGT	2 cut(s)	633, 688
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	2 cut(s)	327, 942
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	2 cut(s)	325, 940
MboII	GAAGA	9 cut(s)	278, 335, 419, 487, 501, 504, 579, 672, 829
MfeI	CAATTG	1 cut(s)	936
MluCI	AATT	6 cut(s)	34, 168, 408, 438, 721, 936
MlyI	GAGTC	2 cut(s)	70, 171
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	8 cut(s)	97, 116, 150, 384, 406, 647, 694, 807
MseI	TTAA	5 cut(s)	111, 339, 567, 602, 752
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	64, 433
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	767
MunI	CAATTG	1 cut(s)	936
MvnI	CGCG	2 cut(s)	56, 64
MwoI	GCNNNNNNNGC	4 cut(s)	16, 91, 134, 394
NciI	CCSGG	1 cut(s)	767
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	325, 940
NlaIII	CATG	5 cut(s)	34, 176, 404, 664, 806
NlaIV	GGNNCC	2 cut(s)	658, 981
NmuCI	GTSAC	1 cut(s)	962
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	96, 974, 1011
PkrI	GCNGC	4 cut(s)	63, 66, 396, 827
PleI	GAGTC	2 cut(s)	70, 171
PpsI	GAGTC	2 cut(s)	70, 171
PshBI	ATTAAT	2 cut(s)	339, 752
Psp1406I	AACGTT	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	658, 981
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	65
SaqAI	TTAA	5 cut(s)	111, 339, 567, 602, 752
SatI	GCNGC	4 cut(s)	62, 65, 395, 826
Sau3AI	GATC	2 cut(s)	325, 940
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	70, 171
ScrFI	CCNGG	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	6 cut(s)	34, 168, 408, 438, 721, 936
SsiI	CCGC	5 cut(s)	62, 64, 308, 640, 825
SspMI	CTAG	2 cut(s)	221, 554
StyD4I	CCNGG	1 cut(s)	765
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	2 cut(s)	636, 691
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	2 cut(s)	351, 997
TasI	AATT	6 cut(s)	34, 168, 408, 438, 721, 936
TauI	GCSGC	3 cut(s)	64, 67, 828
TfiI	GAWTC	3 cut(s)	96, 974, 1011
Tru1I	TTAA	5 cut(s)	111, 339, 567, 602, 752
Tru9I	TTAA	5 cut(s)	111, 339, 567, 602, 752
TscAI	CASTG	2 cut(s)	295, 522
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	7 cut(s)	47, 77, 161, 336, 357, 389, 417
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	295, 522
VpaK11BI	GGWCC	1 cut(s)	980
VspI	ATTAAT	2 cut(s)	339, 752
XapI	RAATTY	3 cut(s)	34, 168, 721
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	2 cut(s)	221, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.