AT1G70000
MYB Family

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012446
Physical Location & Seq
Reverse (-)
26362979 .. 26364878
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70000.1

Sequence Viewer

Length: 786 bp
ATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGTCCGACGGACATAACTACCACCGGTGACAACAACGACAAAGGCGGCGGGGAGAAAGCCATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGTTAGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGTGGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGAAACCGTGAACGCAAACGAGGAACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAAGGTGATTGGAGAGGAATCTCTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCGAGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATCAAGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCATCAAAAGAAGAGAATCAGTTACAGACTCCATTGGAGCTAATCCGTCCAGTTCCGATTCCTATTCCGATTCCACCGTCGCGGAAGATGGCTGATTTGAATCTTAACAAGAAAAAAACTCCAGCGACAACGGAGATGTTTCCGCTGTCGCTGAATTTGCAGAGGCCGTCTTCGTCGACATCGTCATCGTCCAATGAACAGAAGGCACGTGGCTCACGTGCCTCCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTATAATGGGAGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

261

Amino Acids

28.79

Weight (kDa)

9.92

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 99 - 144 1.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 683
AccII CGCG 2 cut(s) 132, 589
AciI CCGC 6 cut(s) 96, 99, 130, 439, 589, 650
AclWI GGATC 2 cut(s) 203, 514
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 225
AcvI CACGTG 2 cut(s) 716, 725
AcyI GRCGYC 2 cut(s) 126, 249
AdeI CACNNNGTG 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 136, 735
AflIII ACRYGT 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 607
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 2 cut(s) 143, 547
AluI AGCT 2 cut(s) 143, 547
AlwI GGATC 2 cut(s) 203, 514
Ama87I CYCGRG 1 cut(s) 733
AoxI GGCC 2 cut(s) 34, 671
ApoI RAATTY 1 cut(s) 661
AsiGI ACCGGT 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 89, 365
AvaI CYCGRG 1 cut(s) 733
BbrPI CACGTG 2 cut(s) 716, 725
BbsI GAAGAC 1 cut(s) 669
BccI CCATC 2 cut(s) 119, 589
BceAI ACGGC 2 cut(s) 49, 658
BfaI CTAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 733
BpiI GAAGAC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 403, 435
BpmI CTGGAG 1 cut(s) 612
BsaAI YACGTR 3 cut(s) 8, 716, 725
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 2 cut(s) 126, 249
BsaJI CCNNGG 2 cut(s) 296, 732
BsaWI WCCGGW 2 cut(s) 74, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 735
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 334, 557
Bse8I GATNNNNATC 1 cut(s) 606
BseDI CCNNGG 2 cut(s) 296, 732
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 2 cut(s) 136, 735
BseMII CTCAG 2 cut(s) 416, 434
BseNI ACTGG 2 cut(s) 334, 557
BseRI GAGGAG 1 cut(s) 721
Bsh1236I CGCG 2 cut(s) 132, 589
BshFI GGCC 2 cut(s) 36, 673
BshTI ACCGGT 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 3 cut(s) 75, 264, 436
BslI CCNNNNNNNGG 2 cut(s) 136, 735
BsnI GGCC 2 cut(s) 36, 673
BsoBI CYCGRG 1 cut(s) 733
Bsp143I GATC 4 cut(s) 196, 208, 467, 506
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 6 cut(s) 96, 99, 130, 439, 589, 650
BspANI GGCC 2 cut(s) 36, 673
BspCNI CTCAG 2 cut(s) 415, 433
BspFNI CGCG 2 cut(s) 132, 589
BspPI GGATC 2 cut(s) 203, 514
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 334, 557
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 296, 732
BssMI GATC 4 cut(s) 196, 208, 467, 506
BssNI GRCGYC 2 cut(s) 126, 249
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 4 cut(s) 21, 230, 275, 585
Bst6I CTCTTC 2 cut(s) 482, 513
BstACI GRCGYC 2 cut(s) 126, 249
BstBAI YACGTR 3 cut(s) 8, 716, 725
BstDEI CTNAG 2 cut(s) 402, 420
BstDSI CCRYGG 1 cut(s) 296
BstFNI CGCG 2 cut(s) 132, 589
BstKTI GATC 4 cut(s) 199, 211, 470, 509
BstMBI GATC 4 cut(s) 196, 208, 467, 506
BstMWI GCNNNNNNNGC 2 cut(s) 416, 664
BstNSI RCATGY 1 cut(s) 54
BstUI CGCG 2 cut(s) 132, 589
BstV2I GAAGAC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 36, 673
BtgI CCRYGG 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 761
BtsIMutI CAGTG 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 2 cut(s) 115, 121
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 4 cut(s) 51, 115, 297, 416
CviJI RGCY 9 cut(s) 36, 110, 143, 474, 547, 599, 673, 720, 782
CviKI_1 RGCY 9 cut(s) 36, 110, 143, 474, 547, 599, 673, 720, 782
DdeI CTNAG 2 cut(s) 402, 420
DpnI GATC 4 cut(s) 198, 210, 469, 508
DpnII GATC 4 cut(s) 196, 208, 467, 506
DraIII CACNNNGTG 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 482, 513
EarI CTCTTC 2 cut(s) 482, 513
EciI GGCGGA 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 296
Eco32I GATATC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 225
Eco72I CACGTG 2 cut(s) 716, 725
Eco88I CYCGRG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 4 cut(s) 54, 118, 300, 419
FatI CATG 4 cut(s) 50, 114, 296, 415
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 2 cut(s) 36, 673
HapII CCGG 3 cut(s) 75, 264, 436
HgaI GACGC 2 cut(s) 115, 121
Hin1I GRCGYC 2 cut(s) 126, 249
Hin1II CATG 4 cut(s) 54, 118, 300, 419
HincII GTYRAC 1 cut(s) 684
HindII GTYRAC 1 cut(s) 684
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 9 cut(s) 366, 412, 451, 494, 523, 535, 565, 577, 607
HpaII CCGG 3 cut(s) 75, 264, 436
HphI GGTGA 2 cut(s) 89, 365
Hpy166II GTNNAC 3 cut(s) 256, 278, 684
Hpy188I TCNGA 6 cut(s) 57, 244, 423, 450, 564, 576
Hpy188III TCNNGA 3 cut(s) 206, 372, 491
Hpy8I GTNNAC 3 cut(s) 256, 278, 684
Hpy99I CGWCG 8 cut(s) 61, 251, 254, 459, 462, 465, 589, 685
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 4 cut(s) 21, 230, 275, 585
HpyCH4IV ACGT 4 cut(s) 7, 249, 715, 724
HpyCH4V TGCA 2 cut(s) 337, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 664
HpyF3I CTNAG 2 cut(s) 402, 420
HpySE526I ACGT 4 cut(s) 7, 249, 715, 724
Hsp92I GRCGYC 2 cut(s) 126, 249
Hsp92II CATG 4 cut(s) 54, 118, 300, 419
Kzo9I GATC 4 cut(s) 196, 208, 467, 506
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 8 cut(s) 88, 219, 277, 315, 389, 449, 570, 642
MaeI CTAG 1 cut(s) 372
MaeII ACGT 4 cut(s) 7, 249, 715, 724
MaeIII GTNAC 5 cut(s) 3, 77, 133, 233, 528
MalI GATC 4 cut(s) 198, 210, 469, 508
MboI GATC 4 cut(s) 196, 208, 467, 506
MboII GAAGA 5 cut(s) 320, 469, 530, 604, 669
MluCI AATT 2 cut(s) 191, 661
MlyI GAGTC 2 cut(s) 421, 529
MmeI TCCRAC 2 cut(s) 80, 325
MnlI CCTC 9 cut(s) 271, 281, 298, 356, 485, 663, 736, 739, 742
MseI TTAA 2 cut(s) 384, 612
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 75, 264, 436
MvnI CGCG 2 cut(s) 132, 589
MwoI GCNNNNNNNGC 2 cut(s) 416, 664
NcoI CCATGG 1 cut(s) 296
NdeII GATC 4 cut(s) 196, 208, 467, 506
NlaIII CATG 4 cut(s) 54, 118, 300, 419
NmuCI GTSAC 3 cut(s) 3, 77, 133
NspI RCATGY 1 cut(s) 54
PciI ACATGT 1 cut(s) 50
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 460, 686, 721
PfeI GAWTC 7 cut(s) 366, 451, 494, 523, 565, 577, 607
PflFI GACNNNGTC 2 cut(s) 248, 688
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 2 cut(s) 420, 529
PmaCI CACGTG 2 cut(s) 716, 725
PmlI CACGTG 2 cut(s) 716, 725
PpsI GAGTC 2 cut(s) 420, 529
Ppu21I YACGTR 3 cut(s) 8, 716, 725
PscI ACATGT 1 cut(s) 50
PspCI CACGTG 2 cut(s) 716, 725
PsyI GACNNNGTC 2 cut(s) 248, 688
SalI GTCGAC 1 cut(s) 682
SaqAI TTAA 2 cut(s) 384, 612
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 4 cut(s) 196, 208, 467, 506
SchI GAGTC 2 cut(s) 421, 529
SetI ASST 9 cut(s) 10, 145, 252, 355, 400, 408, 549, 718, 727
SgrAI CRCCGGYG 1 cut(s) 74
Sse9I AATT 2 cut(s) 191, 661
SsiI CCGC 6 cut(s) 96, 99, 130, 439, 589, 650
SspI AATATT 1 cut(s) 428
SspMI CTAG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 4 cut(s) 21, 230, 275, 585
TaiI ACGT 4 cut(s) 10, 252, 718, 727
TaqI TCGA 6 cut(s) 195, 391, 480, 683, 741, 752
TasI AATT 2 cut(s) 191, 661
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 7 cut(s) 366, 451, 494, 523, 565, 577, 607
Tru1I TTAA 2 cut(s) 384, 612
Tru9I TTAA 2 cut(s) 384, 612
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 3 cut(s) 3, 77, 133
Tsp45I GTSAC 3 cut(s) 3, 77, 133
TspDTI ATGAA 3 cut(s) 135, 191, 717
TspGWI ACGGA 4 cut(s) 74, 152, 542, 653
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 2 cut(s) 248, 688
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 1 cut(s) 371
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.