RchiOBHm_Chr4g0444961
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012446
Physical Location & Seq
Reverse (-)
65570661 .. 65572629
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41258

Sequence Viewer

Length: 999 bp
ATGTCTCGCACGTGCTCTCAGTGCGGGAACAACGGCCACAACTCTCGCACATGCACGGAGGCCGCCGGCGGTGGCGCCGCCCCGGCAGAAAACGGCATCATGCTCTTCGGCGTGAGACTGGTCACCGAGCAGGGAAACCCCTTCAGGAAGAGTGCTAGCATGAACAATCTCTCCCAGTACGACCAGCTGCCTCTTCATGACTCCAACCCCGACGCCGGCTATGCCTCCGACGACGTCGTTCACGCTTCTGGCAACCGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAGGCTGTTCTTGTTGGGTTTGCAGAAGGTAGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAGACTCGGACGCCGACTCAGGTGGCGAGTCATGCTCAGAAGTACTTTCTCAGGCGGAACAACCATAACCGTAGACGCCGTAGATCTAGTCTCTTTGATATCACCACCGATACTCCGTCCATGAATTCATTAATGGAAGAAGATCTAGCCCTCCACCATGAAAATAGTGCACAACTATCACTTCCGGTACTGCCATATCCTCCACCGCAGTCGACCAGTTTAAGTGGCAATCTTATCGGCGGGTTTCCAATCTCAACCTTTCCGATGGCACTGTCTCCGGTGGTCCTACCTGTCACCGGCGAGAGCTCATCGTCAGCCGAGAGTCTAGCATTATTAGGAGGAGCACCAAATCCATCCAATGACGTGCAGCAGATGGCAAAAGTCCCACCAACGACGAGAAAGCTCGTCCGTCCGATTCCCGTCCATCCGGTTCCTCCGTCAGCAAAAATGGCTGAGCTCAACTTGAATCATAAGTATTCACCTAGCAGAGTAGCACCAGAGCCATTGCCTTTGTCACTAAAGCTCTCCAACACGACGTCGTCGGAAGAAGAGTCTCCGACGGCTTCGAGTCACTCGTCTGCTTTTCAGGCCATGTCTAGTGGCACTGATAGCATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

332

Amino Acids

35.84

Weight (kDa)

9.19

Isoelectric Point (pI)

69.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 94 - 139 6.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 237, 908
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 2 cut(s) 442, 581
AccII CGCG 1 cut(s) 261
AciI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 127
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
AfaI GTAC 3 cut(s) 179, 413, 558
AfiI CCNNNNNNNGG 2 cut(s) 215, 665
AgsI TTSAA 1 cut(s) 835
AjiI CACGTC 1 cut(s) 733
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 187, 675, 772, 826, 892
AluI AGCT 5 cut(s) 187, 675, 772, 826, 892
Alw21I GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
Alw26I GTCTC 5 cut(s) 9, 109, 464, 648, 927
Alw44I GTGCAC 1 cut(s) 537
AoxI GGCC 3 cut(s) 34, 60, 957
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 2 cut(s) 187, 736
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 500
AspLEI GCGC 2 cut(s) 77, 267
AspS9I GGNCC 1 cut(s) 652
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 4 cut(s) 115, 463, 655, 840
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 2 cut(s) 677, 828
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
BbvI GCAGC 2 cut(s) 174, 748
BccI CCATC 4 cut(s) 628, 730, 736, 801
BceAI ACGGC 4 cut(s) 49, 109, 432, 945
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 5 cut(s) 9, 109, 464, 648, 927
BfaI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 966
BfoI RGCGCY 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 2 cut(s) 452, 511
BisI GCNGC 5 cut(s) 63, 78, 188, 259, 737
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 5 cut(s) 64, 79, 189, 260, 738
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 2 cut(s) 76, 801
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 105, 990
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu1102I GCTNAGC 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 3 cut(s) 553, 646, 796
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 665
Bse118I RCCGGY 3 cut(s) 65, 215, 665
Bse1I ACTGG 3 cut(s) 123, 175, 585
Bse3DI GCAATG 1 cut(s) 872
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 722, 793
BseLI CCNNNNNNNGG 2 cut(s) 215, 665
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 5 cut(s) 32, 401, 419, 433, 813
BseNI ACTGG 3 cut(s) 123, 175, 585
BseRI GAGGAG 3 cut(s) 305, 308, 723
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 2 cut(s) 174, 748
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 36, 62, 959
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
BsiSI CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 797
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 215, 665
BsmAI GTCTC 5 cut(s) 9, 109, 464, 648, 927
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 3 cut(s) 36, 62, 959
Bsp1286I GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
Bsp143I GATC 2 cut(s) 452, 511
Bsp1720I GCTNAGC 1 cut(s) 822
BspACI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
BspANI GGCC 3 cut(s) 36, 62, 959
BspCNI CTCAG 5 cut(s) 31, 400, 418, 432, 814
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 76, 801
BspOI GCTAGC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 872
BsrFI RCCGGY 3 cut(s) 65, 215, 665
BsrI ACTGG 3 cut(s) 123, 175, 585
BssAI RCCGGY 3 cut(s) 65, 215, 665
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 452, 511
BssNI GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
Bst4CI ACNGT 2 cut(s) 440, 642
Bst6I CTCTTC 4 cut(s) 110, 143, 198, 912
BstACI GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 4 cut(s) 67, 157, 217, 263
BstDEI CTNAG 5 cut(s) 18, 387, 405, 419, 822
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 2 cut(s) 722, 793
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 267
BstKTI GATC 2 cut(s) 455, 514
BstMAI GTCTC 5 cut(s) 9, 109, 464, 648, 927
BstMBI GATC 2 cut(s) 452, 511
BstMWI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 956, 978
BstNSI RCATGY 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 174, 748
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 452, 511
BstYI RGATCY 2 cut(s) 452, 511
BsuRI GGCC 3 cut(s) 36, 62, 959
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 2 cut(s) 722, 793
BtsIMutI CAGTG 4 cut(s) 26, 638, 972, 994
Cac8I GCNNGC 4 cut(s) 67, 157, 217, 263
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 77, 267
Cfr10I RCCGGY 3 cut(s) 65, 215, 665
Cfr13I GGNCC 1 cut(s) 652
CseI GACGC 3 cut(s) 221, 388, 453
Csp6I GTAC 3 cut(s) 178, 412, 557
CviAII CATG 8 cut(s) 51, 100, 160, 197, 401, 490, 527, 961
CviQI GTAC 3 cut(s) 178, 412, 557
DdeI CTNAG 5 cut(s) 18, 387, 405, 419, 822
DinI GGCGCC 1 cut(s) 76
DpnI GATC 2 cut(s) 454, 513
DpnII GATC 2 cut(s) 452, 511
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 4 cut(s) 110, 143, 198, 912
EarI CTCTTC 4 cut(s) 110, 143, 198, 912
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 2 cut(s) 675, 826
Eco24I GRGCYC 2 cut(s) 677, 828
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 2 cut(s) 675, 826
Eco57I CTGAAG 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 121
EcoICRI GAGCTC 2 cut(s) 675, 826
EcoO65I GGTNACC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 493
EcoRV GATATC 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 677, 828
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
FaeI CATG 8 cut(s) 54, 103, 163, 200, 404, 493, 530, 964
FaqI GGGAC 1 cut(s) 737
FatI CATG 8 cut(s) 50, 99, 159, 196, 400, 489, 526, 960
FauI CCCGC 2 cut(s) 17, 602
FblI GTMKAC 2 cut(s) 442, 581
Fnu4HI GCNGC 5 cut(s) 63, 78, 188, 259, 737
FokI GGATG 2 cut(s) 709, 780
FriOI GRGCYC 2 cut(s) 677, 828
Fsp4HI GCNGC 5 cut(s) 63, 78, 188, 259, 737
FspBI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 966
GlaI GCGC 2 cut(s) 76, 266
GluI GCNGC 5 cut(s) 63, 78, 188, 259, 737
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 3 cut(s) 36, 62, 959
HapII CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 797
HgaI GACGC 3 cut(s) 221, 388, 453
HhaI GCGC 2 cut(s) 77, 267
Hin1I GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
Hin1II CATG 8 cut(s) 54, 103, 163, 200, 404, 493, 530, 964
Hin6I GCGC 2 cut(s) 75, 265
HinP1I GCGC 2 cut(s) 75, 265
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 9 cut(s) 200, 373, 385, 397, 691, 784, 835, 920, 937
HpaII CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 797
HphI GGTGA 4 cut(s) 115, 463, 655, 840
Hpy166II GTNNAC 5 cut(s) 241, 285, 443, 539, 582
Hpy188I TCNGA 7 cut(s) 229, 378, 408, 633, 783, 913, 927
Hpy188III TCNNGA 4 cut(s) 145, 197, 357, 367
Hpy8I GTNNAC 5 cut(s) 241, 285, 443, 539, 582
Hpy99I CGWCG 9 cut(s) 215, 233, 236, 239, 766, 907, 910, 913, 931
HpyAV CCTTC 2 cut(s) 151, 319
HpyCH4III ACNGT 2 cut(s) 440, 642
HpyCH4IV ACGT 4 cut(s) 11, 234, 732, 905
HpyCH4V TGCA 4 cut(s) 54, 322, 539, 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 956, 978
HpyF3I CTNAG 5 cut(s) 18, 387, 405, 419, 822
HpySE526I ACGT 4 cut(s) 11, 234, 732, 905
Hsp92I GRCGYC 6 cut(s) 75, 213, 234, 380, 445, 905
Hsp92II CATG 8 cut(s) 54, 103, 163, 200, 404, 493, 530, 964
HspAI GCGC 2 cut(s) 75, 265
KasI GGCGCC 1 cut(s) 74
KroI GCCGGC 2 cut(s) 65, 215
KroNI GCCGGC 2 cut(s) 67, 217
Kzo9I GATC 2 cut(s) 452, 511
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 295, 710
Lsp1109I GCAGC 2 cut(s) 174, 748
LweI GCATC 2 cut(s) 105, 990
MaeI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 966
MaeII ACGT 4 cut(s) 11, 234, 732, 905
MaeIII GTNAC 4 cut(s) 121, 661, 882, 938
MalI GATC 2 cut(s) 454, 513
MboI GATC 2 cut(s) 452, 511
MboII GAAGA 8 cut(s) 97, 160, 185, 382, 518, 521, 926, 929
MflI RGATCY 2 cut(s) 452, 511
MhlI GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
MluCI AATT 1 cut(s) 493
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 7 cut(s) 194, 367, 379, 406, 700, 929, 946
MmeI TCCRAC 5 cut(s) 228, 252, 891, 921, 950
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 2 cut(s) 65, 215
MseI TTAA 2 cut(s) 500, 590
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 797
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 956, 978
NaeI GCCGGC 2 cut(s) 67, 217
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 452, 511
NgoMIV GCCGGC 2 cut(s) 65, 215
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 8 cut(s) 54, 103, 163, 200, 404, 493, 530, 964
NlaIV GGNNCC 2 cut(s) 76, 801
NmeAIII GCCGAG 1 cut(s) 712
NmuCI GTSAC 4 cut(s) 121, 661, 882, 938
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 941
PdiI GCCGGC 2 cut(s) 67, 217
PfeI GAWTC 2 cut(s) 784, 835
PflFI GACNNNGTC 2 cut(s) 233, 907
PkrI GCNGC 5 cut(s) 64, 79, 189, 260, 738
PleI GAGTC 7 cut(s) 194, 367, 379, 405, 699, 928, 945
PluTI GGCGCC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 7 cut(s) 194, 367, 379, 405, 699, 928, 945
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 500
Psp124BI GAGCTC 2 cut(s) 677, 828
PspCI CACGTG 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 76, 801
PspPI GGNCC 1 cut(s) 652
PsuI RGATCY 2 cut(s) 452, 511
PsyI GACNNNGTC 2 cut(s) 233, 907
PvuII CAGCTG 1 cut(s) 187
RsaI GTAC 3 cut(s) 179, 413, 558
RsaNI GTAC 3 cut(s) 178, 412, 557
SacI GAGCTC 2 cut(s) 677, 828
SalI GTCGAC 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 500, 590
SatI GCNGC 5 cut(s) 63, 78, 188, 259, 737
Sau3AI GATC 2 cut(s) 452, 511
Sau96I GGNCC 1 cut(s) 652
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 7 cut(s) 194, 367, 379, 406, 700, 929, 946
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
SfaNI GCATC 2 cut(s) 105, 990
SfoI GGCGCC 1 cut(s) 76
SgrAI CRCCGGYG 2 cut(s) 65, 665
SinI GGWCC 1 cut(s) 652
Sse9I AATT 1 cut(s) 493
SsiI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 966
SstI GAGCTC 2 cut(s) 677, 828
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 440, 642
TaiI ACGT 4 cut(s) 14, 237, 735, 908
TaqI TCGA 2 cut(s) 581, 935
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 411
TauI GCSGC 3 cut(s) 65, 80, 261
TfiI GAWTC 2 cut(s) 784, 835
Tru1I TTAA 2 cut(s) 500, 590
Tru9I TTAA 2 cut(s) 500, 590
TscAI CASTG 4 cut(s) 26, 645, 979, 994
TseFI GTSAC 4 cut(s) 121, 661, 882, 938
TseI GCWGC 2 cut(s) 187, 736
Tsp45I GTSAC 4 cut(s) 121, 661, 882, 938
TspDTI ATGAA 5 cut(s) 176, 185, 486, 506, 543
TspGWI ACGGA 5 cut(s) 71, 302, 474, 767, 795
TspRI CASTG 4 cut(s) 26, 645, 979, 994
Tth111I GACNNNGTC 2 cut(s) 233, 907
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 652
VspI ATTAAT 1 cut(s) 500
XapI RAATTY 1 cut(s) 493
XbaI TCTAGA 1 cut(s) 356
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 2 cut(s) 442, 581
XspI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 966
ZraI GACGTC 2 cut(s) 235, 906
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.