MD16G1083300.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012446
Physical Location & Seq
Reverse (-)
5832486 .. 5835105
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1083300.v1.1.491

Sequence Viewer

Length: 987 bp
ATGTCTCGCACGTGCTCTCAGTGTGGGAACAACGGCCACAACTCCCGCACTTGCACGGATGCCAGCGGCGGAGTCGGTGGTGGCGCGACCGCCTCTGCCGAGAATGGTATCATGCTTTTTGGCGTTAGAGTCACGGAGGCAAACGCGTTCAGAAAGAGCGCCAGCATGAACAACTTGTCCCAGTATGAGCAGCATCTGCAGGCCGACTCAAACGCCGACGCCGGTTATGCTTCTGACGACGTCGTCCACGCCTCTGGACACCGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAAGCTGTTCTTGGTGGGCTTACAGAAAGTAGGGAAAGGAGATTGGAGGGGGATTTCTAGGAACTTCGTGAAGACTCGTACGCCGACTCAGGTGGCGAGTCATGCTCAGAAGTACTTTCTCCGGCGCAACAACCATAACCGTCGACGCCGCAGATCTAGTCTTTTCGACATCACCACCGATACCCCTTTGAATTCATTGATGGAAGAAGATCTAGGCGAATCCTCACCAACAGTTGTACCAGTATTGCCATTCCCACCACAGCCAGAGTCTAATTTGGGTTGCAATTTTCTTGGAGGGTTTCCAGTTTCGACTTTCCCGGTTGCTTTTTCTCCGGCAGCCCTGCCGGGTGAAGGCTCACCGACAGAAAGTAAGCTGACATCACTAGGATTAAACATGAAGTCATTAGAAGACATGCAGCAGCAGAGCCAGACAAAAGTCGCACAAACAACTACTGAGCTCATCCGTCCGATCCCACTTCATCCTCCGGTCGTCCCTCCTTCTAAAATGGCCGGTCTTAACTTGAACAAGACGTACTCATCGTCACCCACCAGGGATCCACTGCCATTGTCTCTGAAGCTCTCTACGACTCCGTCCGAGGAGCAATCGCCCACGACCCCGTCGCATTCGTCTGCGTTTCAGGCCATGTCTAGCGGCTCTGATAGTGTCATTAGCGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

329

Amino Acids

35.34

Weight (kDa)

8.9

Isoelectric Point (pI)

70.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 141 3.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 448
AccII CGCG 3 cut(s) 86, 146, 267
AciI CCGC 8 cut(s) 46, 66, 69, 90, 262, 265, 454, 957
AclWI GGATC 3 cut(s) 769, 854, 867
AcoI YGGCCR 2 cut(s) 34, 813
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 899
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 3 cut(s) 219, 240, 451
AfaI GTAC 4 cut(s) 385, 419, 543, 839
AfiI CCNNNNNNNGG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 496, 829
AjnI CCWGG 1 cut(s) 854
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 310, 679, 763, 883
AluI AGCT 4 cut(s) 310, 679, 763, 883
Alw21I GWGCWC 3 cut(s) 17, 306, 765
Alw26I GTCTC 2 cut(s) 9, 879
AlwI GGATC 3 cut(s) 769, 854, 867
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 4 cut(s) 34, 201, 813, 945
ApeKI GCWGC 4 cut(s) 190, 641, 721, 724
ApoI RAATTY 1 cut(s) 496
AspLEI GCGC 4 cut(s) 86, 161, 273, 432
AsuC2I CCSGG 2 cut(s) 623, 651
AsuHPI GGTGA 5 cut(s) 469, 522, 654, 665, 840
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BamHI GGATCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 765
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 383, 720
Bbv12I GWGCWC 3 cut(s) 17, 306, 765
BbvI GCAGC 4 cut(s) 202, 653, 733, 736
BccI CCATC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 856
BcnI CCSGG 2 cut(s) 623, 651
BcoDI GTCTC 2 cut(s) 9, 879
BfaI CTAG 5 cut(s) 363, 462, 518, 689, 954
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 162
BglII AGATCT 2 cut(s) 458, 514
BisI GCNGC 8 cut(s) 67, 191, 265, 454, 642, 722, 725, 958
BlsI GCNGC 8 cut(s) 68, 192, 266, 455, 643, 723, 726, 959
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 3 cut(s) 623, 651, 856
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 3 cut(s) 623, 651, 856
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 49, 202
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 740
BpiI GAAGAC 2 cut(s) 383, 720
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpuMI CCSGG 2 cut(s) 623, 651
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 3 cut(s) 219, 240, 451
BsaJI CCNNGG 2 cut(s) 855, 900
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse118I RCCGGY 2 cut(s) 221, 815
Bse1I ACTGG 3 cut(s) 181, 545, 608
BseBI CCWGG 1 cut(s) 856
BseDI CCNNGG 2 cut(s) 855, 900
BseGI GGATG 3 cut(s) 64, 765, 784
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 4 cut(s) 32, 407, 425, 750
BseNI ACTGG 3 cut(s) 181, 545, 608
BseRI GAGGAG 3 cut(s) 311, 314, 917
BseXI GCAGC 4 cut(s) 202, 653, 733, 736
Bsh1236I CGCG 3 cut(s) 86, 146, 267
Bsh1285I CGRYCG 2 cut(s) 90, 795
BshFI GGCC 4 cut(s) 36, 203, 815, 947
BsiEI CGRYCG 2 cut(s) 90, 795
BsiHKAI GWGCWC 3 cut(s) 17, 306, 765
BsiSI CCGG 7 cut(s) 222, 427, 623, 638, 650, 791, 816
BsiWI CGTACG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 163, 782
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 2 cut(s) 9, 879
BsmFI GGGAC 2 cut(s) 163, 782
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 4 cut(s) 36, 203, 815, 947
Bsp1286I GDGCHC 3 cut(s) 17, 306, 765
Bsp143I GATC 4 cut(s) 458, 514, 774, 859
BspACI CCGC 8 cut(s) 46, 66, 69, 90, 262, 265, 454, 957
BspANI GGCC 4 cut(s) 36, 203, 815, 947
BspCNI CTCAG 4 cut(s) 31, 406, 424, 751
BspFNI CGCG 3 cut(s) 86, 146, 267
BspLI GGNNCC 1 cut(s) 861
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 3 cut(s) 769, 854, 867
BsrFI RCCGGY 2 cut(s) 221, 815
BsrI ACTGG 3 cut(s) 181, 545, 608
BssAI RCCGGY 2 cut(s) 221, 815
BssECI CCNNGG 2 cut(s) 855, 900
BssMI GATC 4 cut(s) 458, 514, 774, 859
BssNI GRCGYC 3 cut(s) 219, 240, 451
Bst2UI CCWGG 1 cut(s) 856
Bst4CI ACNGT 2 cut(s) 446, 538
BstACI GRCGYC 3 cut(s) 219, 240, 451
BstAPI GCANNNNNTGC 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 4 cut(s) 64, 163, 201, 269
BstDEI CTNAG 4 cut(s) 18, 393, 411, 759
BstF5I GGATG 3 cut(s) 64, 765, 784
BstFNI CGCG 3 cut(s) 86, 146, 267
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 86, 161, 273, 432
BstKTI GATC 4 cut(s) 461, 517, 777, 862
BstMAI GTCTC 2 cut(s) 9, 879
BstMBI GATC 4 cut(s) 458, 514, 774, 859
BstMCI CGRYCG 2 cut(s) 90, 795
BstMWI GCNNNNNNNGC 5 cut(s) 196, 227, 270, 407, 944
BstNI CCWGG 1 cut(s) 856
BstNSI RCATGY 1 cut(s) 721
BstPAI GACNNNNGTC 1 cut(s) 740
BstSCI CCNGG 3 cut(s) 621, 649, 854
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 3 cut(s) 86, 146, 267
BstV1I GCAGC 4 cut(s) 202, 653, 733, 736
BstV2I GAAGAC 2 cut(s) 383, 720
BstX2I RGATCY 3 cut(s) 458, 514, 859
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 3 cut(s) 458, 514, 859
BsuRI GGCC 4 cut(s) 36, 203, 815, 947
BtsCI GGATG 3 cut(s) 64, 765, 784
BtsI GCAGTG 1 cut(s) 863
BtsIMutI CAGTG 2 cut(s) 26, 863
Cac8I GCNNGC 4 cut(s) 64, 163, 201, 269
CaiI CAGNNNCTG 1 cut(s) 196
CfoI GCGC 4 cut(s) 86, 161, 273, 432
Cfr10I RCCGGY 2 cut(s) 221, 815
CseI GACGC 2 cut(s) 227, 459
Csp6I GTAC 4 cut(s) 384, 418, 542, 838
CspCI CAANNNNNGTGG 2 cut(s) 852, 887
CviAII CATG 6 cut(s) 112, 166, 407, 700, 718, 949
CviQI GTAC 4 cut(s) 384, 418, 542, 838
DdeI CTNAG 4 cut(s) 18, 393, 411, 759
DpnI GATC 4 cut(s) 460, 516, 776, 861
DpnII GATC 4 cut(s) 458, 514, 774, 859
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 34, 813
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 899
Eco72I CACGTG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 765
FaeI CATG 6 cut(s) 115, 169, 410, 703, 721, 952
FaiI YATR 9 cut(s) 113, 167, 186, 228, 408, 441, 701, 719, 950
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 163, 782
FatI CATG 6 cut(s) 111, 165, 406, 699, 717, 948
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 8 cut(s) 67, 191, 265, 454, 642, 722, 725, 958
FokI GGATG 3 cut(s) 71, 752, 771
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 8 cut(s) 67, 191, 265, 454, 642, 722, 725, 958
FspBI CTAG 5 cut(s) 363, 462, 518, 689, 954
GlaI GCGC 4 cut(s) 85, 160, 272, 431
GluI GCNGC 8 cut(s) 67, 191, 265, 454, 642, 722, 725, 958
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 4 cut(s) 36, 203, 815, 947
HapII CCGG 7 cut(s) 222, 427, 623, 638, 650, 791, 816
HgaI GACGC 2 cut(s) 227, 459
HhaI GCGC 4 cut(s) 86, 161, 273, 432
Hin1I GRCGYC 3 cut(s) 219, 240, 451
Hin1II CATG 6 cut(s) 115, 169, 410, 703, 721, 952
Hin6I GCGC 4 cut(s) 84, 159, 271, 430
HinP1I GCGC 4 cut(s) 84, 159, 271, 430
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HinfI GANTC 9 cut(s) 72, 129, 206, 379, 391, 403, 524, 572, 892
HpaII CCGG 7 cut(s) 222, 427, 623, 638, 650, 791, 816
HphI GGTGA 5 cut(s) 469, 522, 654, 665, 840
Hpy166II GTNNAC 3 cut(s) 247, 291, 449
Hpy188I TCNGA 7 cut(s) 152, 235, 414, 774, 879, 901, 964
Hpy188III TCNNGA 2 cut(s) 255, 373
Hpy8I GTNNAC 3 cut(s) 247, 291, 449
Hpy99I CGWCG 6 cut(s) 221, 242, 245, 450, 453, 928
HpyAV CCTTC 2 cut(s) 650, 813
HpyCH4III ACNGT 2 cut(s) 446, 538
HpyCH4IV ACGT 3 cut(s) 11, 240, 836
HpyCH4V TGCA 4 cut(s) 54, 199, 588, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 227, 270, 407, 944
HpyF3I CTNAG 4 cut(s) 18, 393, 411, 759
HpySE526I ACGT 3 cut(s) 11, 240, 836
Hsp92I GRCGYC 3 cut(s) 219, 240, 451
Hsp92II CATG 6 cut(s) 115, 169, 410, 703, 721, 952
HspAI GCGC 4 cut(s) 84, 159, 271, 430
Kzo9I GATC 4 cut(s) 458, 514, 774, 859
LmnI GCTCC 2 cut(s) 301, 904
Lsp1109I GCAGC 4 cut(s) 202, 653, 733, 736
LweI GCATC 2 cut(s) 49, 202
MaeI CTAG 5 cut(s) 363, 462, 518, 689, 954
MaeII ACGT 3 cut(s) 11, 240, 836
MaeIII GTNAC 2 cut(s) 130, 846
MalI GATC 4 cut(s) 460, 516, 776, 861
MboI GATC 4 cut(s) 458, 514, 774, 859
MboII GAAGA 4 cut(s) 388, 521, 524, 725
MflI RGATCY 3 cut(s) 458, 514, 859
MhlI GDGCHC 3 cut(s) 17, 306, 765
MluCI AATT 3 cut(s) 496, 577, 589
MluI ACGCGT 1 cut(s) 144
MlyI GAGTC 8 cut(s) 81, 138, 200, 373, 385, 412, 581, 886
MseI TTAA 3 cut(s) 695, 822, 985
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 7 cut(s) 222, 427, 623, 638, 650, 791, 816
MspR9I CCNGG 3 cut(s) 623, 651, 856
Mva1269I GAATGC 1 cut(s) 928
MvaI CCWGG 1 cut(s) 856
MvnI CGCG 3 cut(s) 86, 146, 267
MwoI GCNNNNNNNGC 5 cut(s) 196, 227, 270, 407, 944
NciI CCSGG 2 cut(s) 623, 651
NdeII GATC 4 cut(s) 458, 514, 774, 859
NlaIII CATG 6 cut(s) 115, 169, 410, 703, 721, 952
NlaIV GGNNCC 1 cut(s) 861
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 130, 846
NspI RCATGY 1 cut(s) 721
PcsI WCGNNNNNNNCGW 1 cut(s) 842
PctI GAATGC 1 cut(s) 928
PfeI GAWTC 1 cut(s) 524
Pfl23II CGTACG 1 cut(s) 383
PflFI GACNNNGTC 4 cut(s) 239, 242, 895, 922
PkrI GCNGC 8 cut(s) 68, 192, 266, 455, 643, 723, 726, 959
PleI GAGTC 8 cut(s) 80, 137, 200, 373, 385, 411, 580, 886
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 8 cut(s) 80, 137, 200, 373, 385, 411, 580, 886
Ppu21I YACGTR 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 854
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 854
PspLI CGTACG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 861
PsrI GAACNNNNNNTAC 2 cut(s) 821, 853
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 458, 514, 859
PsyI GACNNNGTC 4 cut(s) 239, 242, 895, 922
RsaI GTAC 4 cut(s) 385, 419, 543, 839
RsaNI GTAC 4 cut(s) 384, 418, 542, 838
SacI GAGCTC 1 cut(s) 765
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 695, 822, 985
SatI GCNGC 8 cut(s) 67, 191, 265, 454, 642, 722, 725, 958
Sau3AI GATC 4 cut(s) 458, 514, 774, 859
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 8 cut(s) 81, 138, 200, 373, 385, 412, 581, 886
ScrFI CCNGG 3 cut(s) 623, 651, 856
SduI GDGCHC 3 cut(s) 17, 306, 765
SetI ASST 9 cut(s) 14, 243, 283, 312, 399, 681, 765, 839, 885
SfaNI GCATC 2 cut(s) 49, 202
SfcI CTRYAG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 447
Sse9I AATT 3 cut(s) 496, 577, 589
SsiI CCGC 8 cut(s) 46, 66, 69, 90, 262, 265, 454, 957
SspMI CTAG 5 cut(s) 363, 462, 518, 689, 954
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 621, 649, 854
TaaI ACNGT 2 cut(s) 446, 538
TaiI ACGT 3 cut(s) 14, 243, 839
TaqI TCGA 3 cut(s) 448, 471, 614
TasI AATT 3 cut(s) 496, 577, 589
TatI WGTACW 1 cut(s) 417
TauI GCSGC 4 cut(s) 69, 267, 456, 960
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 695, 822, 985
Tru9I TTAA 3 cut(s) 695, 822, 985
TscAI CASTG 2 cut(s) 26, 870
TseFI GTSAC 2 cut(s) 130, 846
TseI GCWGC 4 cut(s) 190, 641, 721, 724
Tsp45I GTSAC 2 cut(s) 130, 846
TspDTI ATGAA 4 cut(s) 182, 489, 716, 773
TspGWI ACGGA 5 cut(s) 71, 149, 308, 758, 885
TspRI CASTG 2 cut(s) 26, 870
Tth111I GACNNNGTC 4 cut(s) 239, 242, 895, 922
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 5 cut(s) 363, 462, 518, 689, 954
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.