pycom13g07260
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012446
Physical Location & Seq
Reverse (-)
4797220 .. 4798752
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07260.1

Sequence Viewer

Length: 966 bp
ATGTCTCGCACGTGCTCTCAGTGTGGGAACAACGGCCACAACTCCCGCAAATGCACGGATGTCAGCGGCGGAGGCTGTGGTGGCCCGACCACCGAAAATGGCATCATGCTTTTCGGTGTTAGAGTCACGGAGGGAAACGCGTTCAGGAAGAGCGTCAGCATGAATAACTTGTCCCAGTGTGGGCGGCAGGCCGACACAAACGCCGAAGCGGGTTACGCTTCCGACGACGTCGTCCACGCCTCTGGACACCGCCGCGAGCGCAGGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAAGCTGTTCTTGGTGGGTTTACAGATGGTAGGGAAAGGAGATTGGAGGGGGATATCTAGGAACTTCGTGAAGACTCGTACGCCGACTCAGGTGGCGAGTCATGCTCAAAAGTACTTCCTCCGGCGCAACAACCATAACCGACGACGCCGCAGATCTAGTCTCTTCGACATCACCACCGATACCCCCTTGAATTCATTGATGGAAGAAGATCTAGGCGAAACCTCACCATCAGTTGTACCAGTATTGCCATTCCCACCACAGCCACACTCTAATTTGGGTTGCAATATTCTTGGAGGGTTTCCAGTTTCGACTTTTCCCGCAGCCCTACCTGTCACTGGTGAAGGCTCACCAATACAAAGTAAGCTGATATCATCAGGATTAAACATGAAGTCATTACAAGACATGCAGCAGAGCCAGACAAAAGTCTCACAAACAACTACTAGGCCCATCCGTCCGATCCCACTTCATCCTCCGGTTGTCCCTCCATCTTCTAAACTGGCCGGTTTTAACTTGAAGAATAAGTACTCATCGTCACCCACCAGAGACCCACTGCCATTGTCTCTGAAGCTCTCTACGACTCCATCCGAGGAGCAATCGCCCACGACGACGTCGCATTCGTCTACGTTTCAAGCCATGTCTAGCGGCACTGATAGTATCATTAGCGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

322

Amino Acids

34.77

Weight (kDa)

9.75

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 92 - 137 5.9e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AatII GACGTC 2 cut(s) 231, 905
AccI GTMKAC 1 cut(s) 914
AccII CGCG 2 cut(s) 140, 255
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 2 cut(s) 34, 792
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 878
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 3 cut(s) 228, 439, 902
AfaI GTAC 4 cut(s) 373, 407, 531, 818
AfiI CCNNNNNNNGG 2 cut(s) 180, 629
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 484, 808, 923
AluBI AGCT 3 cut(s) 298, 658, 862
AluI AGCT 3 cut(s) 298, 658, 862
Alw21I GWGCWC 2 cut(s) 17, 294
Alw26I GTCTC 5 cut(s) 9, 458, 724, 831, 858
AlwI GGATC 1 cut(s) 745
AoxI GGCC 5 cut(s) 34, 82, 189, 737, 792
ApeKI GCWGC 2 cut(s) 614, 700
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
AspLEI GCGC 2 cut(s) 261, 420
AspS9I GGNCC 2 cut(s) 83, 738
AsuHPI GGTGA 5 cut(s) 457, 510, 633, 644, 819
BarI GAAGNNNNNNTAC 2 cut(s) 800, 832
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 17, 294
BbvI GCAGC 2 cut(s) 626, 712
BccI CCATC 6 cut(s) 313, 487, 529, 749, 787, 883
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 5 cut(s) 9, 458, 724, 831, 858
BfaI CTAG 5 cut(s) 351, 450, 506, 735, 933
BglII AGATCT 2 cut(s) 446, 502
BisI GCNGC 7 cut(s) 67, 185, 253, 442, 615, 701, 937
BlsI GCNGC 7 cut(s) 68, 186, 254, 443, 616, 702, 938
BmcAI AGTACT 2 cut(s) 407, 818
BmgT120I GGNCC 2 cut(s) 83, 738
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 716
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 3 cut(s) 228, 439, 902
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 1 cut(s) 879
BsaWI WCCGGW 1 cut(s) 766
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 629
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 5 cut(s) 175, 533, 596, 634, 795
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 4 cut(s) 64, 741, 760, 875
BseLI CCNNNNNNNGG 2 cut(s) 180, 629
BseMII CTCAG 2 cut(s) 32, 395
BseNI ACTGG 5 cut(s) 175, 533, 596, 634, 795
BseRI GAGGAG 3 cut(s) 299, 302, 896
BseXI GCAGC 2 cut(s) 626, 712
Bsh1236I CGCG 2 cut(s) 140, 255
BshFI GGCC 5 cut(s) 36, 84, 191, 739, 794
BsiHKAI GWGCWC 2 cut(s) 17, 294
BsiSI CCGG 3 cut(s) 415, 767, 795
BsiWI CGTACG 1 cut(s) 371
BslFI GGGAC 2 cut(s) 157, 758
BslI CCNNNNNNNGG 2 cut(s) 180, 629
BsmAI GTCTC 5 cut(s) 9, 458, 724, 831, 858
BsmFI GGGAC 2 cut(s) 157, 758
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 5 cut(s) 36, 84, 191, 739, 794
Bso31I GGTCTC 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 17, 294
Bsp143I GATC 3 cut(s) 446, 502, 750
BspANI GGCC 5 cut(s) 36, 84, 191, 739, 794
BspCNI CTCAG 2 cut(s) 31, 394
BspFNI CGCG 2 cut(s) 140, 255
BspPI GGATC 1 cut(s) 745
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 5 cut(s) 175, 533, 596, 634, 795
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 3 cut(s) 446, 502, 750
BssNI GRCGYC 3 cut(s) 228, 439, 902
Bst6I CTCTTC 2 cut(s) 143, 461
BstACI GRCGYC 3 cut(s) 228, 439, 902
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 189, 257
BstDEI CTNAG 2 cut(s) 18, 381
BstF5I GGATG 4 cut(s) 64, 741, 760, 875
BstFNI CGCG 2 cut(s) 140, 255
BstHHI GCGC 2 cut(s) 261, 420
BstKTI GATC 3 cut(s) 449, 505, 753
BstMAI GTCTC 5 cut(s) 9, 458, 724, 831, 858
BstMBI GATC 3 cut(s) 446, 502, 750
BstMWI GCNNNNNNNGC 5 cut(s) 72, 81, 215, 258, 395
BstNSI RCATGY 1 cut(s) 700
BstPAI GACNNNNGTC 1 cut(s) 716
BstUI CGCG 2 cut(s) 140, 255
BstV1I GCAGC 2 cut(s) 626, 712
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 2 cut(s) 446, 502
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 2 cut(s) 446, 502
BsuRI GGCC 5 cut(s) 36, 84, 191, 739, 794
BtsCI GGATG 4 cut(s) 64, 741, 760, 875
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 5 cut(s) 26, 182, 627, 842, 939
Cac8I GCNNGC 2 cut(s) 189, 257
CfoI GCGC 2 cut(s) 261, 420
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 83, 738
CseI GACGC 2 cut(s) 142, 447
Csp6I GTAC 4 cut(s) 372, 406, 530, 817
CspCI CAANNNNNGTGG 2 cut(s) 831, 866
CviAII CATG 6 cut(s) 106, 160, 395, 679, 697, 928
CviQI GTAC 4 cut(s) 372, 406, 530, 817
DdeI CTNAG 2 cut(s) 18, 381
DpnI GATC 3 cut(s) 448, 504, 752
DpnII GATC 3 cut(s) 446, 502, 750
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 2 cut(s) 34, 792
Eam1104I CTCTTC 2 cut(s) 143, 461
EarI CTCTTC 2 cut(s) 143, 461
EciI GGCGGA 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 2 cut(s) 348, 663
Eco57I CTGAAG 1 cut(s) 878
Eco72I CACGTG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 484
EcoRV GATATC 2 cut(s) 348, 663
FaeI CATG 6 cut(s) 109, 163, 398, 682, 700, 931
FaiI YATR 7 cut(s) 107, 161, 396, 429, 680, 698, 929
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 157, 758
FatI CATG 6 cut(s) 105, 159, 394, 678, 696, 927
FauI CCCGC 3 cut(s) 53, 202, 619
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 7 cut(s) 67, 185, 253, 442, 615, 701, 937
FokI GGATG 4 cut(s) 71, 728, 747, 862
Fsp4HI GCNGC 7 cut(s) 67, 185, 253, 442, 615, 701, 937
FspBI CTAG 5 cut(s) 351, 450, 506, 735, 933
GlaI GCGC 2 cut(s) 260, 419
GluI GCNGC 7 cut(s) 67, 185, 253, 442, 615, 701, 937
HaeIII GGCC 5 cut(s) 36, 84, 191, 739, 794
HapII CCGG 3 cut(s) 415, 767, 795
HgaI GACGC 2 cut(s) 142, 447
HhaI GCGC 2 cut(s) 261, 420
Hin1I GRCGYC 3 cut(s) 228, 439, 902
Hin1II CATG 6 cut(s) 109, 163, 398, 682, 700, 931
Hin6I GCGC 2 cut(s) 259, 418
HinP1I GCGC 2 cut(s) 259, 418
HinfI GANTC 5 cut(s) 123, 367, 379, 391, 871
HpaII CCGG 3 cut(s) 415, 767, 795
HphI GGTGA 5 cut(s) 457, 510, 633, 644, 819
Hpy166II GTNNAC 4 cut(s) 235, 279, 314, 915
Hpy188I TCNGA 4 cut(s) 223, 750, 858, 880
Hpy188III TCNNGA 4 cut(s) 145, 243, 361, 669
Hpy8I GTNNAC 4 cut(s) 235, 279, 314, 915
Hpy99I CGWCG 8 cut(s) 227, 230, 233, 438, 441, 901, 904, 907
HpyAV CCTTC 1 cut(s) 629
HpyCH4IV ACGT 4 cut(s) 11, 228, 902, 917
HpyCH4V TGCA 3 cut(s) 54, 576, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 81, 215, 258, 395
HpyF3I CTNAG 2 cut(s) 18, 381
HpySE526I ACGT 4 cut(s) 11, 228, 902, 917
Hsp92I GRCGYC 3 cut(s) 228, 439, 902
Hsp92II CATG 6 cut(s) 109, 163, 398, 682, 700, 931
HspAI GCGC 2 cut(s) 259, 418
Kzo9I GATC 3 cut(s) 446, 502, 750
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 289, 883
Lsp1109I GCAGC 2 cut(s) 626, 712
LweI GCATC 1 cut(s) 111
MaeI CTAG 5 cut(s) 351, 450, 506, 735, 933
MaeII ACGT 4 cut(s) 11, 228, 902, 917
MaeIII GTNAC 4 cut(s) 124, 212, 625, 825
MalI GATC 3 cut(s) 448, 504, 752
MboI GATC 3 cut(s) 446, 502, 750
MboII GAAGA 7 cut(s) 160, 376, 448, 509, 512, 774, 820
MflI RGATCY 2 cut(s) 446, 502
MhlI GDGCHC 2 cut(s) 17, 294
MluCI AATT 2 cut(s) 484, 565
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 5 cut(s) 132, 361, 373, 400, 865
MmeI TCCRAC 1 cut(s) 246
MseI TTAA 3 cut(s) 674, 801, 964
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 3 cut(s) 415, 767, 795
Mva1269I GAATGC 1 cut(s) 907
MvnI CGCG 2 cut(s) 140, 255
MwoI GCNNNNNNNGC 5 cut(s) 72, 81, 215, 258, 395
NdeII GATC 3 cut(s) 446, 502, 750
NlaIII CATG 6 cut(s) 109, 163, 398, 682, 700, 931
NmuCI GTSAC 3 cut(s) 124, 625, 825
NspI RCATGY 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 896, 908
PctI GAATGC 1 cut(s) 907
Pfl23II CGTACG 1 cut(s) 371
PflFI GACNNNGTC 3 cut(s) 227, 230, 901
PkrI GCNGC 7 cut(s) 68, 186, 254, 443, 616, 702, 938
PleI GAGTC 5 cut(s) 131, 361, 373, 399, 865
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 5 cut(s) 131, 361, 373, 399, 865
Ppu21I YACGTR 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 716
PspCI CACGTG 1 cut(s) 12
PspLI CGTACG 1 cut(s) 371
PspPI GGNCC 2 cut(s) 83, 738
PsuI RGATCY 2 cut(s) 446, 502
PsyI GACNNNGTC 3 cut(s) 227, 230, 901
RsaI GTAC 4 cut(s) 373, 407, 531, 818
RsaNI GTAC 4 cut(s) 372, 406, 530, 817
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 674, 801, 964
SatI GCNGC 7 cut(s) 67, 185, 253, 442, 615, 701, 937
Sau3AI GATC 3 cut(s) 446, 502, 750
Sau96I GGNCC 2 cut(s) 83, 738
ScaI AGTACT 2 cut(s) 407, 818
SchI GAGTC 5 cut(s) 132, 361, 373, 400, 865
SduI GDGCHC 2 cut(s) 17, 294
SfaNI GCATC 1 cut(s) 111
Sse9I AATT 2 cut(s) 484, 565
SspI AATATT 1 cut(s) 580
SspMI CTAG 5 cut(s) 351, 450, 506, 735, 933
TaiI ACGT 4 cut(s) 14, 231, 905, 920
TaqI TCGA 2 cut(s) 459, 602
TasI AATT 2 cut(s) 484, 565
TatI WGTACW 2 cut(s) 405, 816
TauI GCSGC 5 cut(s) 69, 187, 255, 444, 939
Tru1I TTAA 3 cut(s) 674, 801, 964
Tru9I TTAA 3 cut(s) 674, 801, 964
TscAI CASTG 5 cut(s) 26, 182, 634, 849, 946
TseFI GTSAC 3 cut(s) 124, 625, 825
TseI GCWGC 2 cut(s) 614, 700
Tsp45I GTSAC 3 cut(s) 124, 625, 825
TspDTI ATGAA 4 cut(s) 176, 477, 695, 749
TspGWI ACGGA 4 cut(s) 71, 143, 296, 734
TspRI CASTG 5 cut(s) 26, 182, 634, 849, 946
Tth111I GACNNNGTC 3 cut(s) 227, 230, 901
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 914
XspI CTAG 5 cut(s) 351, 450, 506, 735, 933
ZraI GACGTC 2 cut(s) 229, 903
ZrmI AGTACT 2 cut(s) 407, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.