Rw4G035850
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0012446
Physical Location & Seq
Reverse (-)
62684442 .. 62686615
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035850.1

Sequence Viewer

Length: 1002 bp
ATGTCTCGCACGTGCTCTCAGTGCGGGAACAACGGCCACAACTCTCGAACATGCACGGAGGCCGCCGGCGGTGGGGCCGCCCCGGCAGAAAACGGCATCATGCTCTTCGGCGTGAGACTGGTCACCGAGCAGGGAAACGCCTTCAGGAAGAGTGCTAGCATGAACAATCTCTCCCAGTACGACCAGCTGCCTCTTCATGACTCCAACCCCGACGCCGGCTATGCCTCCGACGACGTCGTTCACGCTGCTGGCAACCGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAGGCTGTTCTTGTTGGGTTTGCAGAAGGTAGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAGACTCGGACGCCGACTCAGGTGGCGAGTCACGCTCAGAAGTACTTTCTCAGGCGGAGCAACCATAACCGTAGACGCCGTAGATCTAGTCTCTTTGATATCACCACCGATACTCCGTCCATGAATTCATTAATGGAAGAAGATCTAGCCCTGCACCATGAAAATAGTGCACAACTATCACTACCGGTACTGCCATATCCTCCACCGCAGTCGACCAGTTTAAGTGGCAATCTTATCGGCGGGTTTCCAATCTCAACCTTTCCGATGGCACTGTCTCCGGTGGTCCTACCTGTCACCGGCGAGAGCTCATCGTCAGCCGAGAGTCTAGCATTATTAGGAGGAGCACCAAATCCATCCAATGACGTGCAGCAGATGGCAAAAGTCCCACCAACGACGAGAAAGCTCGTCCGTCCGATTCCGGTCCATCCAGTTCCTCCGTCAGCAAAAATGGCTGAGCTCAACTTGAATCACAAGTATTCACCTAGCATAGTAGCACCAGAGCCATTGCCTTTGTCACTAAAGCTCTCCAACACGACGTCGTCGTCGGAAGAACAGTCTCCGACGGCTTCGAGTCACTCGTCTGCTTTTCAGGCCATGTCTAGTGGCACTGATAGCATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

333

Amino Acids

35.81

Weight (kDa)

9.19

Isoelectric Point (pI)

69.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 94 - 139 6.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 910
AatII GACGTC 2 cut(s) 237, 908
AccI GTMKAC 2 cut(s) 442, 581
AccII CGCG 1 cut(s) 261
AciI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 127
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 5 cut(s) 213, 234, 380, 445, 905
AfaI GTAC 3 cut(s) 179, 413, 558
AfiI CCNNNNNNNGG 3 cut(s) 72, 215, 665
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 1 cut(s) 835
AjiI CACGTC 1 cut(s) 733
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 187, 675, 772, 826, 892
AluI AGCT 5 cut(s) 187, 675, 772, 826, 892
Alw21I GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
Alw26I GTCTC 5 cut(s) 9, 109, 464, 648, 930
Alw44I GTGCAC 1 cut(s) 537
AoxI GGCC 4 cut(s) 34, 60, 75, 960
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 3 cut(s) 187, 245, 736
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 500
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 75, 652, 790
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 4 cut(s) 115, 463, 655, 840
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 2 cut(s) 652, 790
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 2 cut(s) 677, 828
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
BbvI GCAGC 3 cut(s) 174, 232, 748
BccI CCATC 4 cut(s) 628, 730, 736, 801
BceAI ACGGC 4 cut(s) 49, 109, 432, 948
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 5 cut(s) 9, 109, 464, 648, 930
BfaI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 969
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 2 cut(s) 452, 511
BisI GCNGC 6 cut(s) 63, 78, 188, 246, 259, 737
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 6 cut(s) 64, 79, 189, 247, 260, 738
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 652, 790
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 3 cut(s) 75, 652, 790
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 105, 993
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu1102I GCTNAGC 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 5 cut(s) 213, 234, 380, 445, 905
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 3 cut(s) 553, 646, 787
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 466, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 215, 665
Bse118I RCCGGY 4 cut(s) 65, 215, 553, 665
Bse1I ACTGG 4 cut(s) 123, 175, 585, 797
Bse3DI GCAATG 1 cut(s) 872
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 722, 793
BseLI CCNNNNNNNGG 3 cut(s) 72, 215, 665
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 5 cut(s) 32, 401, 419, 433, 813
BseNI ACTGG 4 cut(s) 123, 175, 585, 797
BseRI GAGGAG 3 cut(s) 305, 308, 723
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 3 cut(s) 174, 232, 748
BsgI GTGCAG 2 cut(s) 506, 755
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 36, 62, 77, 962
BshTI ACCGGT 1 cut(s) 553
BsiHKAI GWGCWC 6 cut(s) 17, 300, 541, 677, 715, 828
BsiSI CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 788
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 72, 215, 665
BsmAI GTCTC 5 cut(s) 9, 109, 464, 648, 930
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 4 cut(s) 36, 62, 77, 962
Bsp1286I GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
Bsp143I GATC 2 cut(s) 452, 511
Bsp1720I GCTNAGC 1 cut(s) 822
BspACI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
BspANI GGCC 4 cut(s) 36, 62, 77, 962
BspCNI CTCAG 5 cut(s) 31, 400, 418, 432, 814
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 872
BsrFI RCCGGY 4 cut(s) 65, 215, 553, 665
BsrI ACTGG 4 cut(s) 123, 175, 585, 797
BssAI RCCGGY 4 cut(s) 65, 215, 553, 665
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 452, 511
BssNI GRCGYC 5 cut(s) 213, 234, 380, 445, 905
Bst4CI ACNGT 3 cut(s) 440, 642, 924
Bst6I CTCTTC 3 cut(s) 110, 143, 198
BstACI GRCGYC 5 cut(s) 213, 234, 380, 445, 905
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 5 cut(s) 67, 157, 217, 250, 263
BstDEI CTNAG 5 cut(s) 18, 387, 405, 419, 822
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 2 cut(s) 722, 793
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 455, 514
BstMAI GTCTC 5 cut(s) 9, 109, 464, 648, 930
BstMBI GATC 2 cut(s) 452, 511
BstMWI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 959, 981
BstNSI RCATGY 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 174, 232, 748
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 452, 511
BstYI RGATCY 2 cut(s) 452, 511
BsuRI GGCC 4 cut(s) 36, 62, 77, 962
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 2 cut(s) 722, 793
BtsIMutI CAGTG 4 cut(s) 26, 638, 975, 997
Cac8I GCNNGC 5 cut(s) 67, 157, 217, 250, 263
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 4 cut(s) 65, 215, 553, 665
Cfr13I GGNCC 3 cut(s) 75, 652, 790
CseI GACGC 3 cut(s) 221, 388, 453
Csp6I GTAC 3 cut(s) 178, 412, 557
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 7 cut(s) 51, 100, 160, 197, 490, 527, 964
CviQI GTAC 3 cut(s) 178, 412, 557
DdeI CTNAG 5 cut(s) 18, 387, 405, 419, 822
DpnI GATC 2 cut(s) 454, 513
DpnII GATC 2 cut(s) 452, 511
DrdI GACNNNNNNGTC 1 cut(s) 910
DseDI GACNNNNNNGTC 1 cut(s) 910
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 110, 143, 198
EarI CTCTTC 3 cut(s) 110, 143, 198
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 2 cut(s) 675, 826
Eco24I GRGCYC 2 cut(s) 677, 828
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 652, 790
Eco53kI GAGCTC 2 cut(s) 675, 826
Eco57I CTGAAG 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 121
EcoICRI GAGCTC 2 cut(s) 675, 826
EcoO65I GGTNACC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 493
EcoRV GATATC 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 677, 828
FaeI CATG 7 cut(s) 54, 103, 163, 200, 493, 530, 967
FaqI GGGAC 1 cut(s) 737
FatI CATG 7 cut(s) 50, 99, 159, 196, 489, 526, 963
FauI CCCGC 2 cut(s) 17, 602
FblI GTMKAC 2 cut(s) 442, 581
Fnu4HI GCNGC 6 cut(s) 63, 78, 188, 246, 259, 737
FokI GGATG 2 cut(s) 709, 780
FriOI GRGCYC 2 cut(s) 677, 828
Fsp4HI GCNGC 6 cut(s) 63, 78, 188, 246, 259, 737
FspBI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 969
GlaI GCGC 1 cut(s) 266
GluI GCNGC 6 cut(s) 63, 78, 188, 246, 259, 737
HaeIII GGCC 4 cut(s) 36, 62, 77, 962
HapII CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 788
HgaI GACGC 3 cut(s) 221, 388, 453
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 5 cut(s) 213, 234, 380, 445, 905
Hin1II CATG 7 cut(s) 54, 103, 163, 200, 493, 530, 967
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 8 cut(s) 200, 373, 385, 397, 691, 784, 835, 940
HpaII CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 788
HphI GGTGA 4 cut(s) 115, 463, 655, 840
Hpy166II GTNNAC 5 cut(s) 241, 285, 443, 539, 582
Hpy188I TCNGA 7 cut(s) 229, 378, 408, 633, 783, 916, 930
Hpy188III TCNNGA 5 cut(s) 45, 145, 197, 357, 367
Hpy8I GTNNAC 5 cut(s) 241, 285, 443, 539, 582
HpyAV CCTTC 2 cut(s) 151, 319
HpyCH4III ACNGT 3 cut(s) 440, 642, 924
HpyCH4IV ACGT 4 cut(s) 11, 234, 732, 905
HpyCH4V TGCA 5 cut(s) 54, 322, 523, 539, 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 959, 981
HpyF3I CTNAG 5 cut(s) 18, 387, 405, 419, 822
HpySE526I ACGT 4 cut(s) 11, 234, 732, 905
Hsp92I GRCGYC 5 cut(s) 213, 234, 380, 445, 905
Hsp92II CATG 7 cut(s) 54, 103, 163, 200, 493, 530, 967
HspAI GCGC 1 cut(s) 265
KroI GCCGGC 2 cut(s) 65, 215
KroNI GCCGGC 2 cut(s) 67, 217
Kzo9I GATC 2 cut(s) 452, 511
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 3 cut(s) 295, 426, 710
Lsp1109I GCAGC 3 cut(s) 174, 232, 748
LweI GCATC 2 cut(s) 105, 993
MaeI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 969
MaeII ACGT 4 cut(s) 11, 234, 732, 905
MaeIII GTNAC 5 cut(s) 121, 398, 661, 882, 941
MalI GATC 2 cut(s) 454, 513
MboI GATC 2 cut(s) 452, 511
MboII GAAGA 7 cut(s) 97, 160, 185, 382, 518, 521, 929
MflI RGATCY 2 cut(s) 452, 511
MhlI GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
MluCI AATT 1 cut(s) 493
MlyI GAGTC 6 cut(s) 194, 367, 379, 406, 700, 949
MmeI TCCRAC 5 cut(s) 228, 252, 894, 921, 953
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 2 cut(s) 65, 215
MseI TTAA 2 cut(s) 500, 590
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 7 cut(s) 66, 83, 216, 554, 647, 666, 788
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 9 cut(s) 21, 83, 221, 258, 264, 401, 818, 959, 981
NaeI GCCGGC 2 cut(s) 67, 217
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 452, 511
NgoMIV GCCGGC 2 cut(s) 65, 215
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 7 cut(s) 54, 103, 163, 200, 493, 530, 967
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 712
NmuCI GTSAC 5 cut(s) 121, 398, 661, 882, 941
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 908, 944
PdiI GCCGGC 2 cut(s) 67, 217
PfeI GAWTC 2 cut(s) 784, 835
PflFI GACNNNGTC 2 cut(s) 233, 907
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 6 cut(s) 64, 79, 189, 247, 260, 738
PleI GAGTC 6 cut(s) 194, 367, 379, 405, 699, 948
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 6 cut(s) 194, 367, 379, 405, 699, 948
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 500
Psp124BI GAGCTC 2 cut(s) 677, 828
PspCI CACGTG 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 3 cut(s) 75, 652, 790
PsuI RGATCY 2 cut(s) 452, 511
PsyI GACNNNGTC 2 cut(s) 233, 907
PvuII CAGCTG 1 cut(s) 187
RsaI GTAC 3 cut(s) 179, 413, 558
RsaNI GTAC 3 cut(s) 178, 412, 557
SacI GAGCTC 2 cut(s) 677, 828
SalI GTCGAC 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 500, 590
SatI GCNGC 6 cut(s) 63, 78, 188, 246, 259, 737
Sau3AI GATC 2 cut(s) 452, 511
Sau96I GGNCC 3 cut(s) 75, 652, 790
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 6 cut(s) 194, 367, 379, 406, 700, 949
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 6 cut(s) 17, 300, 541, 677, 715, 828
SfaNI GCATC 2 cut(s) 105, 993
SgrAI CRCCGGYG 2 cut(s) 65, 665
SinI GGWCC 2 cut(s) 652, 790
Sse9I AATT 1 cut(s) 493
SsiI CCGC 9 cut(s) 24, 63, 69, 78, 256, 259, 424, 575, 609
SspMI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 969
SstI GAGCTC 2 cut(s) 677, 828
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 440, 642, 924
TaiI ACGT 4 cut(s) 14, 237, 735, 908
TaqI TCGA 3 cut(s) 46, 581, 938
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 411
TauI GCSGC 3 cut(s) 65, 80, 261
TfiI GAWTC 2 cut(s) 784, 835
Tru1I TTAA 2 cut(s) 500, 590
Tru9I TTAA 2 cut(s) 500, 590
TscAI CASTG 4 cut(s) 26, 645, 982, 997
TseFI GTSAC 5 cut(s) 121, 398, 661, 882, 941
TseI GCWGC 3 cut(s) 187, 245, 736
Tsp45I GTSAC 5 cut(s) 121, 398, 661, 882, 941
TspDTI ATGAA 5 cut(s) 176, 185, 486, 506, 543
TspGWI ACGGA 5 cut(s) 71, 302, 474, 767, 795
TspRI CASTG 4 cut(s) 26, 645, 982, 997
Tth111I GACNNNGTC 2 cut(s) 233, 907
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 2 cut(s) 652, 790
VspI ATTAAT 1 cut(s) 500
XapI RAATTY 1 cut(s) 493
XbaI TCTAGA 1 cut(s) 356
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 2 cut(s) 442, 581
XspI CTAG 7 cut(s) 156, 357, 456, 515, 695, 852, 969
ZraI GACGTC 2 cut(s) 235, 906
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.