Prupe.1G262700_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012446
Physical Location & Seq
Forward (+)
27125297 .. 27127564
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G262700.1

Sequence Viewer

Length: 984 bp
ATGTCTCGCACGTGCTCTCAGTGTGGGAACAACGGCCATAACTCGCGCACATGCACCGAAGCCAGCGGCGCCGCCTCGGCTGCTAAAAACGGCATCATGCTATTCGGCGTGAGAGTCACGGAGGGAAACGCGTTCAGGAAGAGCGCCAGCATGAACAATCTCTCCCAGTATGAGCAGACCCTGCAGGCCGACTCAAACGGCGACGCCGGCTACGCCTCAGACGACGTCGTACATGCCTCGGGCCACCGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAGGCTGTTCTTGTTGGGTTTGCAGAAGGTGGGGAAAGGAGATTGGAGGGGGATTTCTAGAAACTTCGTGAAGACTCGGACGCCGACTCAGGTGGCGAGTCATGCTCAGAAGTACTTCCTCAGGCGTAACAACCACAACCGAAGACGCCGCAGATCTAGTCTTTTTGACATCACCACTGATACCCCATTGACGAATTCATTGATGGATGAAGAACACATAGGCCAGCAGCAGCACCAAGAAACAGCAACAGCGTTGCCACAGCCACAAATGAATTTGGGTCGCCACATTCTTGGAGGGTTTCCAGTTTCGACTTTTCCCATGGCGCTGTCTCCGGGGGTCCTACCCGTCTCTGGTGAAACCTCATCAGTGGACAATCTGACGTCATCAATAGGACCAAATTTGAATTTACAGAACGACGTGCCGCAGCAGGCGAAAGGAGCACCAACGACGTTGTCGGCTAAGCTCATCCGTCCGATTCCACTTCATCCGGTGCTCCCTCCCCCATCTTCCAAAATGGCCGGTCTTAATTTGAATAACAAGTACACGCCGTCACCCAAAAGGGATCCAACGCCTTTGTCGCTCAAGCTCGCAACGACGTCGTCCGAGGAGCAGTCACCTAATACGACGTCGTCTCACTCGTCTGCGTTTCAAGGCATGTCCAGTGGCTCAGATAGCATCATCAGCGTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

328

Amino Acids

35.38

Weight (kDa)

9.77

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 4 cut(s) 228, 674, 890, 920
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 3 cut(s) 46, 131, 252
AciI CCGC 6 cut(s) 66, 72, 247, 250, 439, 713
AclWI GGATC 2 cut(s) 848, 861
AcoI YGGCCR 2 cut(s) 34, 807
AcsI RAATTY 4 cut(s) 484, 562, 688, 694
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
AfaI GTAC 3 cut(s) 231, 404, 833
AfiI CCNNNNNNNGG 1 cut(s) 641
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 694, 823, 941
AjiI CACGTC 1 cut(s) 709
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 754, 877
AluI AGCT 2 cut(s) 754, 877
Alw21I GWGCWC 4 cut(s) 17, 291, 733, 786
Alw26I GTCTC 4 cut(s) 9, 624, 643, 927
AlwI GGATC 2 cut(s) 848, 861
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 238
AoxI GGCC 5 cut(s) 34, 186, 241, 511, 807
ApeKI GCWGC 4 cut(s) 80, 517, 520, 715
ApoI RAATTY 4 cut(s) 484, 562, 688, 694
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 5 cut(s) 48, 71, 146, 258, 616
AspS9I GGNCC 3 cut(s) 241, 628, 683
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 4 cut(s) 454, 656, 834, 897
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 2 cut(s) 628, 683
AxyI CCTNAGG 1 cut(s) 410
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 368, 439
Bbv12I GWGCWC 4 cut(s) 17, 291, 733, 786
BbvI GCAGC 4 cut(s) 67, 529, 532, 727
BccI CCATC 2 cut(s) 487, 802
BceAI ACGGC 4 cut(s) 49, 106, 214, 823
BcgI CGANNNNNNTGC 2 cut(s) 870, 904
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 4 cut(s) 9, 624, 643, 927
BfaI CTAG 2 cut(s) 348, 447
BfmI CTRYAG 1 cut(s) 182
BfoI RGCGCY 3 cut(s) 72, 147, 617
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 443
BisI GCNGC 9 cut(s) 67, 72, 81, 250, 439, 518, 521, 713, 716
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 9 cut(s) 68, 73, 82, 251, 440, 519, 522, 714, 717
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 2 cut(s) 628, 683
BmeT110I CYCGRG 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 241, 628, 683
BmiI GGNNCC 3 cut(s) 70, 629, 855
BmrFI CCNGG 1 cut(s) 624
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 102, 975
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 368, 439
BplI GAGNNNNNCTC 2 cut(s) 379, 411
Bpu1102I GCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
BsaJI CCNNGG 5 cut(s) 75, 237, 609, 623, 894
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 2 cut(s) 206, 809
Bse1I ACTGG 3 cut(s) 166, 593, 951
Bse21I CCTNAGG 1 cut(s) 410
BseDI CCNNGG 5 cut(s) 75, 237, 609, 623, 894
BseGI GGATG 3 cut(s) 502, 756, 775
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 6 cut(s) 32, 231, 392, 410, 424, 972
BseNI ACTGG 3 cut(s) 166, 593, 951
BseRI GAGGAG 3 cut(s) 296, 299, 911
BseXI GCAGC 4 cut(s) 67, 529, 532, 727
Bsh1236I CGCG 3 cut(s) 46, 131, 252
BshFI GGCC 5 cut(s) 36, 188, 243, 513, 809
BshNI GGYRCC 1 cut(s) 68
BsiHKAI GWGCWC 4 cut(s) 17, 291, 733, 786
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 4 cut(s) 207, 623, 779, 810
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 4 cut(s) 9, 624, 643, 927
BsmBI CGTCTC 2 cut(s) 643, 927
BsnI GGCC 5 cut(s) 36, 188, 243, 513, 809
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 4 cut(s) 17, 291, 733, 786
Bsp143I GATC 2 cut(s) 443, 853
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 6 cut(s) 66, 72, 247, 250, 439, 713
BspANI GGCC 5 cut(s) 36, 188, 243, 513, 809
BspCNI CTCAG 6 cut(s) 31, 230, 391, 409, 423, 971
BspFNI CGCG 3 cut(s) 46, 131, 252
BspLI GGNNCC 3 cut(s) 70, 629, 855
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 2 cut(s) 848, 861
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 68
BsrFI RCCGGY 2 cut(s) 206, 809
BsrI ACTGG 3 cut(s) 166, 593, 951
BssAI RCCGGY 2 cut(s) 206, 809
BssECI CCNNGG 5 cut(s) 75, 237, 609, 623, 894
BssMI GATC 2 cut(s) 443, 853
BssNI GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
BssT1I CCWWGG 1 cut(s) 609
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
BstAPI GCANNNNNTGC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 8 cut(s) 64, 148, 186, 208, 254, 515, 720, 879
BstDEI CTNAG 7 cut(s) 18, 217, 378, 396, 410, 750, 958
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 502, 756, 775
BstFNI CGCG 3 cut(s) 46, 131, 252
BstH2I RGCGCY 3 cut(s) 72, 147, 617
BstHHI GCGC 5 cut(s) 48, 71, 146, 258, 616
BstKTI GATC 2 cut(s) 446, 856
BstMAI GTCTC 4 cut(s) 9, 624, 643, 927
BstMBI GATC 2 cut(s) 443, 853
BstNSI RCATGY 3 cut(s) 54, 236, 949
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 3 cut(s) 46, 131, 252
BstV1I GCAGC 4 cut(s) 67, 529, 532, 727
BstV2I GAAGAC 2 cut(s) 368, 439
BstX2I RGATCY 2 cut(s) 443, 853
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 2 cut(s) 443, 853
Bsu36I CCTNAGG 1 cut(s) 410
BsuRI GGCC 5 cut(s) 36, 188, 243, 513, 809
BtgI CCRYGG 1 cut(s) 609
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 502, 756, 775
BtsIMutI CAGTG 4 cut(s) 26, 465, 663, 958
Cac8I GCNNGC 8 cut(s) 64, 148, 186, 208, 254, 515, 720, 879
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 5 cut(s) 48, 71, 146, 258, 616
Cfr10I RCCGGY 2 cut(s) 206, 809
Cfr13I GGNCC 3 cut(s) 241, 628, 683
CseI GACGC 3 cut(s) 212, 379, 444
Csp6I GTAC 3 cut(s) 230, 403, 832
CviAII CATG 7 cut(s) 51, 97, 151, 233, 392, 610, 946
CviQI GTAC 3 cut(s) 230, 403, 832
DdeI CTNAG 7 cut(s) 18, 217, 378, 396, 410, 750, 958
DinI GGCGCC 1 cut(s) 70
DpnI GATC 2 cut(s) 445, 855
DpnII GATC 2 cut(s) 443, 853
EaeI YGGCCR 2 cut(s) 34, 807
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 628, 683
Eco72I CACGTG 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 609
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 2 cut(s) 643, 927
FaeI CATG 7 cut(s) 54, 100, 154, 236, 395, 613, 949
FatI CATG 7 cut(s) 50, 96, 150, 232, 391, 609, 945
Fnu4HI GCNGC 9 cut(s) 67, 72, 81, 250, 439, 518, 521, 713, 716
FokI GGATG 3 cut(s) 509, 743, 762
Fsp4HI GCNGC 9 cut(s) 67, 72, 81, 250, 439, 518, 521, 713, 716
FspBI CTAG 2 cut(s) 348, 447
GlaI GCGC 5 cut(s) 47, 70, 145, 257, 615
GluI GCNGC 9 cut(s) 67, 72, 81, 250, 439, 518, 521, 713, 716
HaeII RGCGCY 3 cut(s) 72, 147, 617
HaeIII GGCC 5 cut(s) 36, 188, 243, 513, 809
HapII CCGG 4 cut(s) 207, 623, 779, 810
HgaI GACGC 3 cut(s) 212, 379, 444
HhaI GCGC 5 cut(s) 48, 71, 146, 258, 616
Hin1I GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
Hin1II CATG 7 cut(s) 54, 100, 154, 236, 395, 613, 949
Hin6I GCGC 5 cut(s) 46, 69, 144, 256, 614
HinP1I GCGC 5 cut(s) 46, 69, 144, 256, 614
HinfI GANTC 6 cut(s) 114, 191, 364, 376, 388, 766
HpaII CCGG 4 cut(s) 207, 623, 779, 810
HphI GGTGA 4 cut(s) 454, 656, 834, 897
Hpy166II GTNNAC 3 cut(s) 276, 661, 834
Hpy188I TCNGA 7 cut(s) 220, 369, 399, 669, 765, 895, 961
Hpy188III TCNNGA 3 cut(s) 136, 348, 358
Hpy8I GTNNAC 3 cut(s) 276, 661, 834
Hpy99I CGWCG 9 cut(s) 206, 227, 230, 710, 742, 889, 892, 919, 922
HpyAV CCTTC 1 cut(s) 310
HpyCH4IV ACGT 7 cut(s) 11, 225, 671, 708, 740, 887, 917
HpyCH4V TGCA 3 cut(s) 54, 184, 313
HpyF3I CTNAG 7 cut(s) 18, 217, 378, 396, 410, 750, 958
HpySE526I ACGT 7 cut(s) 11, 225, 671, 708, 740, 887, 917
Hsp92I GRCGYC 8 cut(s) 69, 204, 225, 371, 436, 671, 887, 917
Hsp92II CATG 7 cut(s) 54, 100, 154, 236, 395, 613, 949
HspAI GCGC 5 cut(s) 46, 69, 144, 256, 614
KasI GGCGCC 1 cut(s) 68
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 443, 853
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 4 cut(s) 286, 728, 789, 898
Lsp1109I GCAGC 4 cut(s) 67, 529, 532, 727
LweI GCATC 2 cut(s) 102, 975
MaeI CTAG 2 cut(s) 348, 447
MaeII ACGT 7 cut(s) 11, 225, 671, 708, 740, 887, 917
MaeIII GTNAC 4 cut(s) 115, 416, 840, 903
MalI GATC 2 cut(s) 445, 855
MboI GATC 2 cut(s) 443, 853
MboII GAAGA 5 cut(s) 151, 373, 444, 512, 789
MflI RGATCY 2 cut(s) 443, 853
MhlI GDGCHC 4 cut(s) 17, 291, 733, 786
MluCI AATT 5 cut(s) 484, 562, 688, 694, 817
MluI ACGCGT 1 cut(s) 129
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 5 cut(s) 123, 185, 358, 370, 397
MmeI TCCRAC 1 cut(s) 881
MroNI GCCGGC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 2 cut(s) 816, 982
MslI CAYNNNNRTG 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 4 cut(s) 207, 623, 779, 810
MspR9I CCNGG 1 cut(s) 624
MvnI CGCG 3 cut(s) 46, 131, 252
NaeI GCCGGC 1 cut(s) 208
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 1 cut(s) 624
NcoI CCATGG 1 cut(s) 609
NdeII GATC 2 cut(s) 443, 853
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 7 cut(s) 54, 100, 154, 236, 395, 613, 949
NlaIV GGNNCC 3 cut(s) 70, 629, 855
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 115, 840, 903
NspI RCATGY 3 cut(s) 54, 236, 949
PciSI GCTCTTC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 926
PdiI GCCGGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 766
PflFI GACNNNGTC 4 cut(s) 224, 742, 889, 919
PkrI GCNGC 9 cut(s) 68, 73, 82, 251, 440, 519, 522, 714, 717
PleI GAGTC 5 cut(s) 122, 185, 358, 370, 396
PluTI GGCGCC 1 cut(s) 72
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 5 cut(s) 122, 185, 358, 370, 396
Ppu21I YACGTR 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 628
PspCI CACGTG 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 70, 629, 855
PspPI GGNCC 3 cut(s) 241, 628, 683
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 443, 853
PsyI GACNNNGTC 4 cut(s) 224, 742, 889, 919
RsaI GTAC 3 cut(s) 231, 404, 833
RsaNI GTAC 3 cut(s) 230, 403, 832
RseI CAYNNNNRTG 1 cut(s) 974
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 816, 982
SatI GCNGC 9 cut(s) 67, 72, 81, 250, 439, 518, 521, 713, 716
Sau3AI GATC 2 cut(s) 443, 853
Sau96I GGNCC 3 cut(s) 241, 628, 683
SbfI CCTGCAGG 1 cut(s) 186
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 5 cut(s) 123, 185, 358, 370, 397
ScrFI CCNGG 1 cut(s) 624
SdaI CCTGCAGG 1 cut(s) 186
SduI GDGCHC 4 cut(s) 17, 291, 733, 786
SfaNI GCATC 2 cut(s) 102, 975
SfcI CTRYAG 1 cut(s) 182
SfoI GGCGCC 1 cut(s) 70
SinI GGWCC 2 cut(s) 628, 683
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse8387I CCTGCAGG 1 cut(s) 186
Sse9I AATT 5 cut(s) 484, 562, 688, 694, 817
SsiI CCGC 6 cut(s) 66, 72, 247, 250, 439, 713
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 2 cut(s) 348, 447
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 1 cut(s) 609
TaiI ACGT 7 cut(s) 14, 228, 674, 711, 743, 890, 920
TaqI TCGA 1 cut(s) 599
TasI AATT 5 cut(s) 484, 562, 688, 694, 817
TatI WGTACW 2 cut(s) 402, 831
TauI GCSGC 5 cut(s) 69, 74, 252, 441, 715
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 2 cut(s) 816, 982
Tru9I TTAA 2 cut(s) 816, 982
TscAI CASTG 4 cut(s) 26, 472, 663, 958
TseFI GTSAC 3 cut(s) 115, 840, 903
TseI GCWGC 4 cut(s) 80, 517, 520, 715
Tsp45I GTSAC 3 cut(s) 115, 840, 903
TspDTI ATGAA 5 cut(s) 167, 477, 513, 575, 764
TspGWI ACGGA 3 cut(s) 134, 293, 749
TspRI CASTG 4 cut(s) 26, 472, 663, 958
Tth111I GACNNNGTC 4 cut(s) 224, 742, 889, 919
VpaK11BI GGWCC 2 cut(s) 628, 683
XapI RAATTY 4 cut(s) 484, 562, 688, 694
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 3 cut(s) 54, 236, 949
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 2 cut(s) 348, 447
ZraI GACGTC 4 cut(s) 226, 672, 888, 918
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.