MD13G1084100.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012446
Physical Location & Seq
Reverse (-)
5894590 .. 5896486
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1084100.v1.1.491

Sequence Viewer

Length: 972 bp
ATGTCTCGCACGTGCTCTCAGTGTGGGAACAACGGCCACAACTCCCGCACATGCTCGGATGTCAGCGGCGGAGGCTGTGGTGGCCCGATCGCCGAAAACGGCATCATGCTTTTCGGTGTTAGAGTCACGGAGGGAAACGCGTTCAGGAAGAGCGTCAGCATGAACAACTTGTCCCAGTATGAGCGGCCTCAGCAGGCCGACACAAACGCCGAAGAGGGTTACGCTTCCGACGAGGTCGTCCACGCCTCTGGACACCGCCGCGAGCGCAGGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAAGCTGTTCTTGGTGGGTTTACAGATGGTAGGGAGAGGAGATTGGAGGGGGATATCTAGGAACTTCGTGAAGACTCGTACGCCGACTCAGGTGGCGAGTCATGCTCAAAAGTACTTCCTCCGGCGCAACAACCATAACCGACGACGCCGCAGATCTAGTCTCTTCGACATCACCACCGATACCCCCTTGAATTCATTGATGGAAGAAGATCTAGGCGAAACCTCACCATCAGTTGTACCAGTATTGCCATTCCCACCACAGCCACACTCTAATTTGGGTTGCAATATTCTTGGAGGGTTTCCAGTTTCGACTTTTCCGGCAGCCCTACCTGTCACTGGTGAAAGCTCACCAATACAAAGTAAGCTGATATCATCAGGATTAAACATGAAGTCGTTACAAGACATGCAGCAGAGCCAGACAAAAGTCTCACAAACAACTACTAAGCCCATCCGTCCGATCCCACTTCATCCTCCGGTTGTCCCTCCATCTTCTAAACTGGCCGGTTTTAACTTGAAGAATAAGAACTCATCGTCACCCACTAGAGACCCACTGCCATTGTCTCTGAAGCTCTCTACGACTCCATCCCAGGAGCAATCGCCCACGACGACGTCGCATTCGTCTACGTTTCAAGCCATGTCTAGTGGCTCTGATAGTATCATTAGCGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

324

Amino Acids

35.11

Weight (kDa)

9.67

Isoelectric Point (pI)

72.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 94 - 139 6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 920
AccII CGCG 2 cut(s) 140, 261
AciI CCGC 7 cut(s) 46, 66, 69, 184, 256, 259, 448
AclWI GGATC 1 cut(s) 751
AcoI YGGCCR 2 cut(s) 34, 798
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 884
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 2 cut(s) 445, 908
AfaI GTAC 3 cut(s) 379, 413, 537
AfiI CCNNNNNNNGG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 490, 814, 929
AjnI CCWGG 1 cut(s) 885
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 304, 645, 664, 868
AluI AGCT 4 cut(s) 304, 645, 664, 868
Alw21I GWGCWC 2 cut(s) 17, 300
Alw26I GTCTC 5 cut(s) 9, 464, 730, 837, 864
AlwI GGATC 1 cut(s) 751
AoxI GGCC 5 cut(s) 34, 82, 185, 195, 798
ApeKI GCWGC 2 cut(s) 620, 706
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 898, 930
AspLEI GCGC 2 cut(s) 267, 426
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 5 cut(s) 463, 516, 639, 650, 825
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 17, 300
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 632, 718
BccI CCATC 6 cut(s) 319, 493, 535, 755, 793, 889
BceAI ACGGC 2 cut(s) 49, 115
BciT130I CCWGG 1 cut(s) 887
BcoDI GTCTC 5 cut(s) 9, 464, 730, 837, 864
BfaI CTAG 5 cut(s) 357, 456, 512, 840, 939
BglII AGATCT 2 cut(s) 452, 508
BisI GCNGC 6 cut(s) 67, 185, 259, 448, 621, 707
BlsI GCNGC 6 cut(s) 68, 186, 260, 449, 622, 708
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 887
BmgT120I GGNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 887
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 722
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu10I CCTNAGC 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 445, 908
BsaI GGTCTC 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 885
BsaWI WCCGGW 1 cut(s) 772
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse118I RCCGGY 1 cut(s) 800
Bse1I ACTGG 5 cut(s) 175, 539, 602, 640, 801
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 1 cut(s) 885
BseGI GGATG 4 cut(s) 64, 747, 766, 881
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 3 cut(s) 32, 203, 401
BseNI ACTGG 5 cut(s) 175, 539, 602, 640, 801
BseRI GAGGAG 3 cut(s) 305, 308, 351
BseXI GCAGC 2 cut(s) 632, 718
Bsh1236I CGCG 2 cut(s) 140, 261
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 5 cut(s) 36, 84, 187, 197, 800
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 17, 300
BsiSI CCGG 4 cut(s) 421, 617, 773, 801
BsiWI CGTACG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 157, 764
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 5 cut(s) 9, 464, 730, 837, 864
BsmFI GGGAC 2 cut(s) 157, 764
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 5 cut(s) 36, 84, 187, 197, 800
Bso31I GGTCTC 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 17, 300
Bsp143I GATC 4 cut(s) 87, 452, 508, 756
BspACI CCGC 7 cut(s) 46, 66, 69, 184, 256, 259, 448
BspANI GGCC 5 cut(s) 36, 84, 187, 197, 800
BspCNI CTCAG 3 cut(s) 31, 202, 400
BspFNI CGCG 2 cut(s) 140, 261
BspPI GGATC 1 cut(s) 751
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 837
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 800
BsrI ACTGG 5 cut(s) 175, 539, 602, 640, 801
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 885
BssMI GATC 4 cut(s) 87, 452, 508, 756
BssNI GRCGYC 2 cut(s) 445, 908
Bst2UI CCWGG 1 cut(s) 887
Bst6I CTCTTC 3 cut(s) 143, 207, 467
BstACI GRCGYC 2 cut(s) 445, 908
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 195, 263
BstDEI CTNAG 4 cut(s) 18, 189, 387, 741
BstF5I GGATG 4 cut(s) 64, 747, 766, 881
BstFNI CGCG 2 cut(s) 140, 261
BstHHI GCGC 2 cut(s) 267, 426
BstKTI GATC 4 cut(s) 90, 455, 511, 759
BstMAI GTCTC 5 cut(s) 9, 464, 730, 837, 864
BstMBI GATC 4 cut(s) 87, 452, 508, 756
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 72, 81, 190, 264, 401
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 2 cut(s) 54, 706
BstPAI GACNNNNGTC 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 885
BstUI CGCG 2 cut(s) 140, 261
BstV1I GCAGC 2 cut(s) 632, 718
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 452, 508
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 2 cut(s) 452, 508
BsuRI GGCC 5 cut(s) 36, 84, 187, 197, 800
BtsCI GGATG 4 cut(s) 64, 747, 766, 881
BtsI GCAGTG 1 cut(s) 848
BtsIMutI CAGTG 3 cut(s) 26, 633, 848
Cac8I GCNNGC 2 cut(s) 195, 263
CfoI GCGC 2 cut(s) 267, 426
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 2 cut(s) 142, 453
Csp6I GTAC 3 cut(s) 378, 412, 536
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 7 cut(s) 51, 106, 160, 401, 685, 703, 934
CviQI GTAC 3 cut(s) 378, 412, 536
DdeI CTNAG 4 cut(s) 18, 189, 387, 741
DpnI GATC 4 cut(s) 89, 454, 510, 758
DpnII GATC 4 cut(s) 87, 452, 508, 756
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 34, 798
Eam1104I CTCTTC 3 cut(s) 143, 207, 467
EarI CTCTTC 3 cut(s) 143, 207, 467
EciI GGCGGA 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 837
Eco32I GATATC 2 cut(s) 354, 669
Eco57I CTGAAG 1 cut(s) 884
Eco72I CACGTG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 885
EcoRV GATATC 2 cut(s) 354, 669
FaeI CATG 7 cut(s) 54, 109, 163, 404, 688, 706, 937
FaiI YATR 9 cut(s) 52, 107, 161, 180, 402, 435, 686, 704, 935
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 2 cut(s) 157, 764
FatI CATG 7 cut(s) 50, 105, 159, 400, 684, 702, 933
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 1 cut(s) 920
Fnu4HI GCNGC 6 cut(s) 67, 185, 259, 448, 621, 707
FokI GGATG 4 cut(s) 71, 734, 753, 868
Fsp4HI GCNGC 6 cut(s) 67, 185, 259, 448, 621, 707
FspBI CTAG 5 cut(s) 357, 456, 512, 840, 939
GlaI GCGC 2 cut(s) 266, 425
GluI GCNGC 6 cut(s) 67, 185, 259, 448, 621, 707
HaeIII GGCC 5 cut(s) 36, 84, 187, 197, 800
HapII CCGG 4 cut(s) 421, 617, 773, 801
HgaI GACGC 2 cut(s) 142, 453
HhaI GCGC 2 cut(s) 267, 426
Hin1I GRCGYC 2 cut(s) 445, 908
Hin1II CATG 7 cut(s) 54, 109, 163, 404, 688, 706, 937
Hin6I GCGC 2 cut(s) 265, 424
HinP1I GCGC 2 cut(s) 265, 424
HinfI GANTC 5 cut(s) 123, 373, 385, 397, 877
HpaII CCGG 4 cut(s) 421, 617, 773, 801
HphI GGTGA 5 cut(s) 463, 516, 639, 650, 825
Hpy166II GTNNAC 4 cut(s) 241, 285, 320, 921
Hpy188I TCNGA 5 cut(s) 58, 229, 756, 864, 949
Hpy188III TCNNGA 4 cut(s) 145, 249, 367, 675
Hpy8I GTNNAC 4 cut(s) 241, 285, 320, 921
Hpy99I CGWCG 6 cut(s) 233, 444, 447, 907, 910, 913
HpyCH4IV ACGT 3 cut(s) 11, 908, 923
HpyCH4V TGCA 2 cut(s) 582, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 81, 190, 264, 401
HpyF3I CTNAG 4 cut(s) 18, 189, 387, 741
HpySE526I ACGT 3 cut(s) 11, 908, 923
Hsp92I GRCGYC 2 cut(s) 445, 908
Hsp92II CATG 7 cut(s) 54, 109, 163, 404, 688, 706, 937
HspAI GCGC 2 cut(s) 265, 424
Kzo9I GATC 4 cut(s) 87, 452, 508, 756
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 295, 889
Lsp1109I GCAGC 2 cut(s) 632, 718
LweI GCATC 1 cut(s) 111
MaeI CTAG 5 cut(s) 357, 456, 512, 840, 939
MaeII ACGT 3 cut(s) 11, 908, 923
MaeIII GTNAC 5 cut(s) 124, 218, 631, 693, 831
MalI GATC 4 cut(s) 89, 454, 510, 758
MbiI CCGCTC 1 cut(s) 184
MboI GATC 4 cut(s) 87, 452, 508, 756
MboII GAAGA 8 cut(s) 160, 224, 382, 454, 515, 518, 780, 826
MflI RGATCY 2 cut(s) 452, 508
MhlI GDGCHC 2 cut(s) 17, 300
MluCI AATT 2 cut(s) 490, 571
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 5 cut(s) 132, 367, 379, 406, 871
MmeI TCCRAC 1 cut(s) 252
MseI TTAA 3 cut(s) 680, 807, 970
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 4 cut(s) 421, 617, 773, 801
MspR9I CCNGG 1 cut(s) 887
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 1 cut(s) 887
MvnI CGCG 2 cut(s) 140, 261
MwoI GCNNNNNNNGC 5 cut(s) 72, 81, 190, 264, 401
NdeII GATC 4 cut(s) 87, 452, 508, 756
NlaIII CATG 7 cut(s) 54, 109, 163, 404, 688, 706, 937
NmuCI GTSAC 3 cut(s) 124, 631, 831
NspI RCATGY 2 cut(s) 54, 706
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 902, 914
PctI GAATGC 1 cut(s) 913
Pfl23II CGTACG 1 cut(s) 377
PflFI GACNNNGTC 2 cut(s) 233, 907
PkrI GCNGC 6 cut(s) 68, 186, 260, 449, 622, 708
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 5 cut(s) 131, 367, 379, 405, 871
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 5 cut(s) 131, 367, 379, 405, 871
Ppu21I YACGTR 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 885
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 885
PspLI CGTACG 1 cut(s) 377
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 2 cut(s) 452, 508
PsyI GACNNNGTC 2 cut(s) 233, 907
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 3 cut(s) 379, 413, 537
RsaNI GTAC 3 cut(s) 378, 412, 536
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 680, 807, 970
SatI GCNGC 6 cut(s) 67, 185, 259, 448, 621, 707
Sau3AI GATC 4 cut(s) 87, 452, 508, 756
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 5 cut(s) 132, 367, 379, 406, 871
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 2 cut(s) 17, 300
SfaNI GCATC 1 cut(s) 111
Sse9I AATT 2 cut(s) 490, 571
SsiI CCGC 7 cut(s) 46, 66, 69, 184, 256, 259, 448
SspI AATATT 1 cut(s) 586
SspMI CTAG 5 cut(s) 357, 456, 512, 840, 939
StyD4I CCNGG 1 cut(s) 885
TaiI ACGT 3 cut(s) 14, 911, 926
TaqI TCGA 2 cut(s) 465, 608
TasI AATT 2 cut(s) 490, 571
TatI WGTACW 1 cut(s) 411
TauI GCSGC 4 cut(s) 69, 187, 261, 450
Tru1I TTAA 3 cut(s) 680, 807, 970
Tru9I TTAA 3 cut(s) 680, 807, 970
TscAI CASTG 3 cut(s) 26, 640, 855
TseFI GTSAC 3 cut(s) 124, 631, 831
TseI GCWGC 2 cut(s) 620, 706
Tsp45I GTSAC 3 cut(s) 124, 631, 831
TspDTI ATGAA 4 cut(s) 176, 483, 701, 755
TspGWI ACGGA 3 cut(s) 143, 302, 740
TspRI CASTG 3 cut(s) 26, 640, 855
Tth111I GACNNNGTC 2 cut(s) 233, 907
XapI RAATTY 1 cut(s) 490
XceI RCATGY 2 cut(s) 54, 706
XmiI GTMKAC 1 cut(s) 920
XspI CTAG 5 cut(s) 357, 456, 512, 840, 939
ZraI GACGTC 1 cut(s) 909
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.