Rroxscaffold_5G00385450
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012446
Physical Location & Seq
Reverse (-)
64517403 .. 64519446
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385450.1

Sequence Viewer

Length: 840 bp
ATGTCTCGCACGTGCTCTCAGTGCGGGAACAACGGCCACAACTCTCGCACATGCACGGAGGCCGCCGGCGGTGGCGCCGCCCCGGCAGAAAACGGCATCATGCTCTTCGGCGTGAGACTGGTCACGGAGCAGGGAAACGCCTTCAGGAAGAGTGCTAGCATGAACAATCTCTCCCAGTACGACCCGCTGCCTCTTCATGACTCCAACCCCGACGCCGGTTATGCCTCCGACGACGTCGTCCACGCTTCTGGCAACCGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAGGCTGTTCTTGTTGGGTTTGCAGAAGTCCATGAATTCATTAATGGAAGAAGATCTAGCCCTGCACCATGAAAATAGTGCACAACTATCACTACCGGTACTGCCATATCCTCCACCGCAGTCGACCAGTTTAAGTGGCAATCTTATCGGCGGGTTTCCAATCTCAACCTTTCCGATGGCACTGTCTCCGGTGGTCCTACCTGTCACCGGCGAGAGCTCATCGTCAGCCGAGAGTCTAGCATTATTAGGAGGAGCACCAAATCCATCCAATGACGTGCAGCACATGGCAAAAGTCCCACCAACGACGAGAAAGCTCGTCCGTCCGATTCCGGTCCATCCGGTTCCTCCGTCAGCAAAAATGGCTGAGCTCAACTTGAATCACAAGTATTCACCTAGCAGAGTAGCACCAGAGCCATTGCCTTTGTCACTAAAGCTCTCCAACACGACGTCGTCGGAAGAACAGTCTCCGACGGCTTCGAGTCACTCGTCTGCTTTTCAGGCCATGTCTAGTGGCACTGATAGCATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

279

Amino Acids

29.51

Weight (kDa)

6.19

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 2 cut(s) 237, 749
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 422
AccII CGCG 1 cut(s) 261
AciI CCGC 9 cut(s) 24, 63, 69, 78, 185, 256, 259, 416, 450
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 127
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 4 cut(s) 75, 213, 234, 746
AfaI GTAC 2 cut(s) 179, 399
AfiI CCNNNNNNNGG 2 cut(s) 215, 506
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 1 cut(s) 676
AjiI CACGTC 1 cut(s) 574
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 516, 613, 667, 733
AluI AGCT 4 cut(s) 516, 613, 667, 733
Alw21I GWGCWC 6 cut(s) 17, 300, 382, 518, 556, 669
Alw26I GTCTC 4 cut(s) 9, 109, 489, 768
Alw44I GTGCAC 1 cut(s) 378
AoxI GGCC 3 cut(s) 34, 60, 798
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 187, 577
ApoI RAATTY 1 cut(s) 334
AseI ATTAAT 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 2 cut(s) 77, 267
AspS9I GGNCC 2 cut(s) 493, 631
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 496, 681
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 2 cut(s) 493, 631
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 2 cut(s) 518, 669
BbrPI CACGTG 1 cut(s) 12
Bbv12I GWGCWC 6 cut(s) 17, 300, 382, 518, 556, 669
BbvI GCAGC 2 cut(s) 174, 589
BccI CCATC 3 cut(s) 469, 571, 642
BceAI ACGGC 3 cut(s) 49, 109, 786
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 4 cut(s) 9, 109, 489, 768
BfaI CTAG 5 cut(s) 156, 356, 536, 693, 807
BfoI RGCGCY 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 352
BisI GCNGC 5 cut(s) 63, 78, 188, 259, 578
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 5 cut(s) 64, 79, 189, 260, 579
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 493, 631
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 493, 631
BmiI GGNNCC 2 cut(s) 76, 642
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 105, 831
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 169
Bpu1102I GCTNAGC 1 cut(s) 663
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 4 cut(s) 75, 213, 234, 746
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 4 cut(s) 394, 487, 628, 637
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 506
Bse118I RCCGGY 4 cut(s) 65, 215, 394, 506
Bse1I ACTGG 3 cut(s) 123, 175, 426
Bse3DI GCAATG 1 cut(s) 713
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 563, 634
BseLI CCNNNNNNNGG 2 cut(s) 215, 506
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 2 cut(s) 32, 654
BseNI ACTGG 3 cut(s) 123, 175, 426
BseRI GAGGAG 3 cut(s) 305, 308, 564
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 174, 589
BsgI GTGCAG 2 cut(s) 347, 596
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 36, 62, 800
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 6 cut(s) 17, 300, 382, 518, 556, 669
BsiSI CCGG 8 cut(s) 66, 83, 216, 395, 488, 507, 629, 638
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 2 cut(s) 215, 506
BsmAI GTCTC 4 cut(s) 9, 109, 489, 768
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 3 cut(s) 36, 62, 800
Bsp1286I GDGCHC 6 cut(s) 17, 300, 382, 518, 556, 669
Bsp143I GATC 1 cut(s) 352
Bsp1720I GCTNAGC 1 cut(s) 663
BspACI CCGC 9 cut(s) 24, 63, 69, 78, 185, 256, 259, 416, 450
BspANI GGCC 3 cut(s) 36, 62, 800
BspCNI CTCAG 2 cut(s) 31, 655
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 76, 642
BspOI GCTAGC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 4 cut(s) 65, 215, 394, 506
BsrI ACTGG 3 cut(s) 123, 175, 426
BssAI RCCGGY 4 cut(s) 65, 215, 394, 506
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 4 cut(s) 75, 213, 234, 746
Bst4CI ACNGT 2 cut(s) 483, 762
Bst6I CTCTTC 3 cut(s) 110, 143, 198
BstACI GRCGYC 4 cut(s) 75, 213, 234, 746
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 3 cut(s) 67, 157, 263
BstDEI CTNAG 2 cut(s) 18, 663
BstF5I GGATG 2 cut(s) 563, 634
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 267
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 4 cut(s) 9, 109, 489, 768
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 8 cut(s) 21, 83, 221, 258, 264, 659, 797, 819
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 174, 589
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 3 cut(s) 36, 62, 800
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 2 cut(s) 563, 634
BtsIMutI CAGTG 4 cut(s) 26, 479, 813, 835
Cac8I GCNNGC 3 cut(s) 67, 157, 263
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 77, 267
Cfr10I RCCGGY 4 cut(s) 65, 215, 394, 506
Cfr13I GGNCC 2 cut(s) 493, 631
CseI GACGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 178, 398
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 8 cut(s) 51, 100, 160, 197, 331, 368, 583, 802
CviQI GTAC 2 cut(s) 178, 398
DdeI CTNAG 2 cut(s) 18, 663
DinI GGCGCC 1 cut(s) 76
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 110, 143, 198
EarI CTCTTC 3 cut(s) 110, 143, 198
Ecl136II GAGCTC 2 cut(s) 516, 667
Eco24I GRGCYC 2 cut(s) 518, 669
Eco47I GGWCC 2 cut(s) 493, 631
Eco53kI GAGCTC 2 cut(s) 516, 667
Eco57I CTGAAG 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 12
EcoICRI GAGCTC 2 cut(s) 516, 667
EcoRI GAATTC 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 518, 669
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
FaeI CATG 8 cut(s) 54, 103, 163, 200, 334, 371, 586, 805
FaqI GGGAC 1 cut(s) 578
FatI CATG 8 cut(s) 50, 99, 159, 196, 330, 367, 582, 801
FauI CCCGC 3 cut(s) 17, 192, 443
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 5 cut(s) 63, 78, 188, 259, 578
FokI GGATG 2 cut(s) 550, 621
FriOI GRGCYC 2 cut(s) 518, 669
Fsp4HI GCNGC 5 cut(s) 63, 78, 188, 259, 578
FspBI CTAG 5 cut(s) 156, 356, 536, 693, 807
GlaI GCGC 2 cut(s) 76, 266
GluI GCNGC 5 cut(s) 63, 78, 188, 259, 578
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 3 cut(s) 36, 62, 800
HapII CCGG 8 cut(s) 66, 83, 216, 395, 488, 507, 629, 638
HgaI GACGC 1 cut(s) 221
HhaI GCGC 2 cut(s) 77, 267
Hin1I GRCGYC 4 cut(s) 75, 213, 234, 746
Hin1II CATG 8 cut(s) 54, 103, 163, 200, 334, 371, 586, 805
Hin6I GCGC 2 cut(s) 75, 265
HinP1I GCGC 2 cut(s) 75, 265
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 5 cut(s) 200, 532, 625, 676, 778
HpaII CCGG 8 cut(s) 66, 83, 216, 395, 488, 507, 629, 638
HphI GGTGA 2 cut(s) 496, 681
Hpy166II GTNNAC 4 cut(s) 241, 285, 380, 423
Hpy188I TCNGA 5 cut(s) 229, 474, 624, 754, 768
Hpy188III TCNNGA 2 cut(s) 145, 197
Hpy8I GTNNAC 4 cut(s) 241, 285, 380, 423
Hpy99I CGWCG 9 cut(s) 215, 233, 236, 239, 607, 748, 751, 754, 772
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 483, 762
HpyCH4IV ACGT 4 cut(s) 11, 234, 573, 746
HpyCH4V TGCA 5 cut(s) 54, 322, 364, 380, 577
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 83, 221, 258, 264, 659, 797, 819
HpyF3I CTNAG 2 cut(s) 18, 663
HpySE526I ACGT 4 cut(s) 11, 234, 573, 746
Hsp92I GRCGYC 4 cut(s) 75, 213, 234, 746
Hsp92II CATG 8 cut(s) 54, 103, 163, 200, 334, 371, 586, 805
HspAI GCGC 2 cut(s) 75, 265
KasI GGCGCC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 3 cut(s) 127, 295, 551
Lsp1109I GCAGC 2 cut(s) 174, 589
LweI GCATC 2 cut(s) 105, 831
MaeI CTAG 5 cut(s) 156, 356, 536, 693, 807
MaeII ACGT 4 cut(s) 11, 234, 573, 746
MaeIII GTNAC 4 cut(s) 121, 502, 723, 779
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 6 cut(s) 97, 160, 185, 359, 362, 767
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 6 cut(s) 17, 300, 382, 518, 556, 669
MluCI AATT 1 cut(s) 334
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 3 cut(s) 194, 541, 787
MmeI TCCRAC 5 cut(s) 228, 252, 732, 762, 791
MnlI CCTC 9 cut(s) 52, 201, 235, 266, 283, 286, 420, 542, 654
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 2 cut(s) 341, 431
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 8 cut(s) 66, 83, 216, 395, 488, 507, 629, 638
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 8 cut(s) 21, 83, 221, 258, 264, 659, 797, 819
NaeI GCCGGC 1 cut(s) 67
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 83
NdeII GATC 1 cut(s) 352
NgoMIV GCCGGC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 8 cut(s) 54, 103, 163, 200, 334, 371, 586, 805
NlaIV GGNNCC 2 cut(s) 76, 642
NmeAIII GCCGAG 1 cut(s) 553
NmuCI GTSAC 4 cut(s) 121, 502, 723, 779
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 782
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 625, 676
PflFI GACNNNGTC 3 cut(s) 233, 236, 748
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 5 cut(s) 64, 79, 189, 260, 579
PleI GAGTC 3 cut(s) 194, 540, 786
PluTI GGCGCC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 3 cut(s) 194, 540, 786
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 341
Psp124BI GAGCTC 2 cut(s) 518, 669
PspCI CACGTG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 76, 642
PspPI GGNCC 2 cut(s) 493, 631
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 3 cut(s) 233, 236, 748
RsaI GTAC 2 cut(s) 179, 399
RsaNI GTAC 2 cut(s) 178, 398
SacI GAGCTC 2 cut(s) 518, 669
SalI GTCGAC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 341, 431
SatI GCNGC 5 cut(s) 63, 78, 188, 259, 578
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 493, 631
SchI GAGTC 3 cut(s) 194, 541, 787
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 6 cut(s) 17, 300, 382, 518, 556, 669
SfaNI GCATC 2 cut(s) 105, 831
SfoI GGCGCC 1 cut(s) 76
SgrAI CRCCGGYG 2 cut(s) 65, 506
SinI GGWCC 2 cut(s) 493, 631
Sse9I AATT 1 cut(s) 334
SsiI CCGC 9 cut(s) 24, 63, 69, 78, 185, 256, 259, 416, 450
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 5 cut(s) 156, 356, 536, 693, 807
SstI GAGCTC 2 cut(s) 518, 669
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 483, 762
TaiI ACGT 4 cut(s) 14, 237, 576, 749
TaqI TCGA 2 cut(s) 422, 776
TasI AATT 1 cut(s) 334
TauI GCSGC 3 cut(s) 65, 80, 261
TfiI GAWTC 2 cut(s) 625, 676
Tru1I TTAA 2 cut(s) 341, 431
Tru9I TTAA 2 cut(s) 341, 431
TscAI CASTG 4 cut(s) 26, 486, 820, 835
TseFI GTSAC 4 cut(s) 121, 502, 723, 779
TseI GCWGC 2 cut(s) 187, 577
Tsp45I GTSAC 4 cut(s) 121, 502, 723, 779
TspDTI ATGAA 5 cut(s) 176, 185, 327, 347, 384
TspGWI ACGGA 5 cut(s) 71, 140, 302, 608, 636
TspRI CASTG 4 cut(s) 26, 486, 820, 835
Tth111I GACNNNGTC 3 cut(s) 233, 236, 748
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 493, 631
VspI ATTAAT 1 cut(s) 341
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 5 cut(s) 156, 356, 536, 693, 807
ZraI GACGTC 2 cut(s) 235, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.