AT1G71015

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011848
Physical Location & Seq
Reverse (-)
26788861 .. 26790262
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71015.2

Sequence Viewer

Length: 588 bp
ATGGGAAATAGCTTGGGAACCAAGAAAACAGCGACAATCATGAACATCAATGGCGAGAGTTTCAAACTGAAAACGCCTGTGGAAGCTGGTACAGTGGTTAAAGATTTTCCAGGCCACGTTCTCTTGGAATCCGAAGCAGTGAAGCGTTTAGGAATCAGAGCAAAGCCCTTGGAGCCTCACCAAAACTTGGAATCCAAAAGGATTTACTTCATGGTTGAACTTCCAAGAACATGGAAAGAGAGAACTCCAAGAAGGGTTCGGTCGGGAATCCAGATGAGTGCGAAGGAGAGATTAGAGAATCTGAAGCTGTCTCGTAGATCATCATCTGATCTCTCGGTAATGAAGAAGAAGACAGAGGTTAATGATGAAGAGAGAGAAGTGAGTAGCGTGAAGTTGAAGTTACCAAAGTGGAAAATTGAGAAACTGAGGAAAGAGAGTGAGAGTGGCTCTGATTTCTCCAACAAGATCACACAACTTTGTCTCCTTCACATACCAAGTGGTTTGATTCATCAAAGACAACATTTGCTTCGTAATGGAGGAAGAAACTTTGGGATTGAAGAAAAAGAAGAAGGTGCCAAAATCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

195

Amino Acids

22.26

Weight (kDa)

10.0

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 146 1.3e-19 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71015 AT1G71015 AT2G01340
fragaria_vesca FvH4_4g32310
malus_domestica MD16G1029200.v1.1
prunus_persica Prupe.1G323600_v2.0.a1
pyrus_communis pycom13g02480 pycom16g02510
rosa_chinensis RchiOBHm_Chr4g0441101
rosa_laevigata RLG00000006114
rosa_multiflora Rmu_sc0006317.1_g000016 Rmu_sc0030601.1_g000001
rosa_roxburghii Rroxscaffold_5G00382070
rosa_rugosa Rorug04G0331100
rosa_samantha Rh4AG382700 Rh4BG396500 Rh4CG411600 Rh4DG389300
rosa_wichuraiana Rw4G033030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 4 cut(s) 64, 218, 397, 557
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 12, 86, 307
AluI AGCT 3 cut(s) 12, 86, 307
Alw26I GTCTC 2 cut(s) 315, 485
AoxI GGCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 170
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 315, 485
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 19, 174, 574
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 356
BplI GAGNNNNNCTC 2 cut(s) 431, 463
BsaBI GATNNNNATC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 322
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 572
BsiEI CGRYCG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 315, 485
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 317, 328, 465
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 19, 174, 574
BspT107I GGYRCC 1 cut(s) 572
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 317, 328, 465
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 425
BstKTI GATC 3 cut(s) 320, 331, 468
BstMAI GTCTC 2 cut(s) 315, 485
BstMBI GATC 3 cut(s) 317, 328, 465
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 99, 144
CciI TCATGA 1 cut(s) 39
Csp6I GTAC 1 cut(s) 90
CviAII CATG 4 cut(s) 40, 211, 231, 585
CviJI RGCY 7 cut(s) 12, 86, 114, 166, 175, 307, 447
CviKI_1 RGCY 7 cut(s) 12, 86, 114, 166, 175, 307, 447
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 425
DpnI GATC 3 cut(s) 319, 330, 467
DpnII GATC 3 cut(s) 317, 328, 465
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 43, 214, 234, 588
FaiI YATR 5 cut(s) 41, 212, 232, 491, 586
FatI CATG 4 cut(s) 39, 210, 230, 584
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 4 cut(s) 43, 214, 234, 588
HinfI GANTC 6 cut(s) 128, 153, 191, 267, 298, 505
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 133, 158, 303, 328, 451
Hpy188III TCNNGA 3 cut(s) 40, 264, 271
HpyAV CCTTC 4 cut(s) 246, 277, 494, 563
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 4 cut(s) 43, 214, 234, 588
Kzo9I GATC 3 cut(s) 317, 328, 465
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 72, 90, 96, 123, 284
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 399
MalI GATC 3 cut(s) 319, 330, 467
MboI GATC 3 cut(s) 317, 328, 465
MboII GAAGA 7 cut(s) 355, 358, 361, 380, 552, 569, 578
MluCI AATT 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 4 cut(s) 186, 349, 420, 530
MseI TTAA 2 cut(s) 99, 360
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 3 cut(s) 317, 328, 465
NlaIII CATG 4 cut(s) 43, 214, 234, 588
NlaIV GGNNCC 3 cut(s) 19, 174, 574
PagI TCATGA 1 cut(s) 39
PfeI GAWTC 6 cut(s) 128, 153, 191, 267, 298, 505
PflMI CCANNNNNTGG 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 19, 174, 574
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 99, 360
Sau3AI GATC 3 cut(s) 317, 328, 465
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 14, 88, 120, 309, 360, 574
Sse9I AATT 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 120
TaqII GACCGA 1 cut(s) 249
TasI AATT 1 cut(s) 414
TfiI GAWTC 6 cut(s) 128, 153, 191, 267, 298, 505
Tru1I TTAA 2 cut(s) 99, 360
Tru9I TTAA 2 cut(s) 99, 360
TscAI CASTG 2 cut(s) 99, 144
TspDTI ATGAA 5 cut(s) 56, 199, 356, 381, 497
TspRI CASTG 2 cut(s) 99, 144
Van91I CCANNNNNTGG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.