Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006044

Physical Location & Seq

Genomic Coordinates Reverse (-)

50548541 .. 50552067

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGATCCATAGAGGATAAGGAGATTTCTGGAGGCAGTGCTATAAGTTTTGAGTTTCACAAACAGAATGGAGGAGGAGCTAACCGCACTAGTGGCAACACTACTTCTTCCCATCATCATAGAACAGCTTTGGGAAAGTTACCAACACCATCAAAATGGGATGATGCACAGAAATGGCTAGTGGGGTTGTCCAGAGGAGTAGACAAAACGCAGTCCAAGACCAAACCCAGGAACTCAAATGCAGATGACTTGAGGCTCATAGCTCCTGTGCCGCAGAAGGAGCAGGACTACTCGAGCGGAGACGAGGATGGAGAAGACGATAGACACGGAAAAGAAGCAAATGGGTGTTCTGGAACTGAAGTGGCAAATCATTACGATGTGGAGACGAAGAAAGTGGACTGTGATGACTCGGTCTGGAGGAGCAACAAGCCTATGGAGAACCCAACTTCAGCTGCTGCCATGAGATCCATATGTTTGAGGGACATGGGAACTGAGATGACCCCAATTGCAAGCCAAGAGCCTTCGAGAACCGGCACGCCTATCCGGGCCACAACTCCGGCTGCAAGGAGCCCGATATCTTCGGGATCCTCGACTCCGGTGAGGGCATGTCAGCATGGGATGCAAGCTAGCCAGCAGGAGTATCAAGGGTCTGGTGATAATGGTAGAAGTACTCATGAGGGCATTCCTTGTGGGAGAGGGAGTGGTGGAAGCAATAAAAGGTATGTGGAGGAATCAAATGTGTGCAAGAATACTATGCCTGAGAATCAGAGTTCAGATCAAGCTAGGAAGCCAAATCCTCTAGAAACTAGAGCAATGGCTTGGGATGAGGCAGAACGCGCTAAATACATGGCAAGGTACAAGCGTGAAGAGGTAAAGATACAAGCCTGGGAAAACCATGAGAAGAGGAAAGCTGAGATGGAAATGAGAAAAATGGAGGTGAAGGCTGAAAGAATGAAATCTCGGGCACAAGAAAAGTTAACAAATAAACTTGCTGCAACGAGAAGAATAGCCGAAGAAAAGAGGGCTAATGCAGAGGCCAAACTCAATGAAAAAGCTTTGAAGACGTCGGAAAAGGCAGATTACATAAGGAGGACTGGTCATTTGCCCTCTTCATTCTCTTGCAAGTTGCCTTCTCTTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010118 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

381

Amino Acids

42.29

Weight (kDa)

9.04

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	268 - 370	3e-34	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71010
fragaria_vesca	FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320
malus_domestica	MD13G1026200.v1.1 MD16G1029100.v1.1
prunus_persica	Prupe.1G323700_v2.0.a1 Prupe.1G323700_v2.0.a1
pyrus_communis	pycom13g02450 pycom13g02470 pycom16g02480 pycom16g02500
rosa_chinensis	RchiOBHm_Chr4g0441111
rosa_laevigata	RLG00000006113
rosa_multiflora	Rmu_sc0006317.1_g000017 Rmu_sc0027558.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382080
rosa_rugosa	Rorug04G0331100 Rorug04G0331200
rosa_samantha	Rh4AG382800 Rh4BG396600 Rh4CG411700 Rh4DG389400 Rh6CG153000
rosa_wichuraiana	Rw4G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1067
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	837
AciI	CCGC	3 cut(s)	85, 272, 297
AclWI	GGATC	3 cut(s)	459, 579, 592
AcuI	CTGAAG	2 cut(s)	378, 432
AcyI	GRCGYC	1 cut(s)	1064
AfaI	GTAC	2 cut(s)	670, 857
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	1060
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	227, 884
AluBI	AGCT	8 cut(s)	80, 128, 263, 452, 626, 782, 911, 1055
AluI	AGCT	8 cut(s)	80, 128, 263, 452, 626, 782, 911, 1055
Alw26I	GTCTC	2 cut(s)	294, 377
AlwI	GGATC	3 cut(s)	459, 579, 592
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	292, 960
AoxI	GGCC	2 cut(s)	546, 1035
ApeKI	GCWGC	4 cut(s)	452, 455, 560, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	1084, 1116
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	1 cut(s)	546
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	3 cut(s)	610, 665, 949
AsuNHI	GCTAGC	1 cut(s)	626
AvaI	CYCGRG	2 cut(s)	292, 960
BaeGI	GKGCMC	1 cut(s)	967
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	321, 1067
BbvI	GCAGC	4 cut(s)	439, 442, 547, 979
BccI	CCATC	4 cut(s)	120, 157, 302, 910
BciT130I	CCWGG	2 cut(s)	229, 886
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	294, 377
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	6 cut(s)	90, 179, 627, 783, 800, 807
BisI	GCNGC	5 cut(s)	272, 453, 456, 561, 993
BlsI	GCNGC	5 cut(s)	273, 454, 457, 562, 994
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	3 cut(s)	229, 545, 886
BmeT110I	CYCGRG	2 cut(s)	292, 960
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	569, 586
BmrFI	CCNGG	3 cut(s)	229, 545, 886
BmsI	GCATC	2 cut(s)	154, 609
BmtI	GCTAGC	1 cut(s)	630
BpiI	GAAGAC	2 cut(s)	321, 1067
BpmI	CTGGAG	2 cut(s)	51, 436
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	1064
BsaJI	CCNNGG	2 cut(s)	227, 885
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	4 cut(s)	685, 715, 1081, 1111
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	1099
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	229, 886
BseDI	CCNNGG	2 cut(s)	227, 885
BseGI	GGATG	4 cut(s)	166, 313, 624, 829
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	483, 750, 903
BseNI	ACTGG	1 cut(s)	1099
BseRI	GAGGAG	4 cut(s)	87, 90, 210, 433
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	4 cut(s)	439, 442, 547, 979
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	548, 1037
BsiHKCI	CYCGRG	2 cut(s)	292, 960
BsiSI	CCGG	4 cut(s)	531, 544, 557, 596
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	294, 377
BsmBI	CGTCTC	2 cut(s)	294, 377
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	548, 1037
BsoBI	CYCGRG	2 cut(s)	292, 960
Bsp1286I	GDGCHC	2 cut(s)	572, 967
Bsp143I	GATC	4 cut(s)	5, 464, 584, 775
BspACI	CCGC	3 cut(s)	85, 272, 297
BspANI	GGCC	2 cut(s)	548, 1037
BspCNI	CTCAG	3 cut(s)	484, 751, 904
BspFNI	CGCG	1 cut(s)	837
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	569, 586
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	3 cut(s)	459, 579, 592
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	1099
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	227, 885
BssMI	GATC	4 cut(s)	5, 464, 584, 775
BssNI	GRCGYC	1 cut(s)	1064
Bst2UI	CCWGG	2 cut(s)	229, 886
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	3 cut(s)	861, 896, 1114
BstACI	GRCGYC	1 cut(s)	1064
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	5 cut(s)	511, 536, 624, 628, 632
BstDEI	CTNAG	3 cut(s)	492, 759, 912
BstF5I	GGATG	4 cut(s)	166, 313, 624, 829
BstFNI	CGCG	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	4 cut(s)	8, 467, 587, 778
BstMAI	GTCTC	2 cut(s)	294, 377
BstMBI	GATC	4 cut(s)	5, 464, 584, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 280, 619, 836
BstNI	CCWGG	2 cut(s)	229, 886
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	227, 543, 884
BstSLI	GKGCMC	1 cut(s)	967
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	4 cut(s)	439, 442, 547, 979
BstV2I	GAAGAC	2 cut(s)	321, 1067
BstX2I	RGATCY	3 cut(s)	5, 464, 584
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	3 cut(s)	5, 464, 584
BsuRI	GGCC	2 cut(s)	548, 1037
BtsCI	GGATG	4 cut(s)	166, 313, 624, 829
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	511, 536, 624, 628, 632
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	546
Csp6I	GTAC	2 cut(s)	669, 856
CviAII	CATG	7 cut(s)	460, 484, 606, 614, 674, 847, 896
CviQI	GTAC	2 cut(s)	669, 856
DdeI	CTNAG	3 cut(s)	492, 759, 912
DpnI	GATC	4 cut(s)	7, 466, 586, 777
DpnII	GATC	4 cut(s)	5, 464, 584, 775
Eam1104I	CTCTTC	3 cut(s)	861, 896, 1114
EarI	CTCTTC	3 cut(s)	861, 896, 1114
Eco24I	GRGCYC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	378, 432
Eco88I	CYCGRG	2 cut(s)	292, 960
EcoRII	CCWGG	2 cut(s)	227, 884
EcoRV	GATATC	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	572
Esp3I	CGTCTC	2 cut(s)	294, 377
FaeI	CATG	7 cut(s)	463, 487, 609, 617, 677, 850, 899
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	7 cut(s)	459, 483, 605, 613, 673, 846, 895
FauNDI	CATATG	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	272, 453, 456, 561, 993
FokI	GGATG	4 cut(s)	173, 320, 631, 836
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	5 cut(s)	272, 453, 456, 561, 993
FspBI	CTAG	6 cut(s)	90, 179, 627, 783, 800, 807
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	5 cut(s)	272, 453, 456, 561, 993
GsuI	CTGGAG	2 cut(s)	51, 436
HaeIII	GGCC	2 cut(s)	548, 1037
HapII	CCGG	4 cut(s)	531, 544, 557, 596
HhaI	GCGC	1 cut(s)	839
Hin1I	GRCGYC	1 cut(s)	1064
Hin1II	CATG	7 cut(s)	463, 487, 609, 617, 677, 850, 899
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	4 cut(s)	407, 592, 731, 763
HpaI	GTTAAC	1 cut(s)	978
HpaII	CCGG	4 cut(s)	531, 544, 557, 596
HphI	GGTGA	3 cut(s)	610, 665, 949
Hpy166II	GTNNAC	3 cut(s)	202, 397, 978
Hpy188I	TCNGA	3 cut(s)	768, 775, 1069
Hpy188III	TCNNGA	8 cut(s)	30, 192, 351, 415, 525, 582, 674, 800
Hpy8I	GTNNAC	3 cut(s)	202, 397, 978
Hpy99I	CGWCG	1 cut(s)	1069
HpyAV	CCTTC	4 cut(s)	271, 531, 934, 1140
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	1064
HpyCH4V	TGCA	9 cut(s)	167, 242, 509, 563, 622, 744, 995, 1031, 1122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 280, 619, 836
HpyF3I	CTNAG	3 cut(s)	492, 759, 912
HpySE526I	ACGT	1 cut(s)	1064
Hsp92I	GRCGYC	1 cut(s)	1064
Hsp92II	CATG	7 cut(s)	463, 487, 609, 617, 677, 850, 899
HspAI	GCGC	1 cut(s)	837
KspAI	GTTAAC	1 cut(s)	978
Kzo9I	GATC	4 cut(s)	5, 464, 584, 775
LmnI	GCTCC	5 cut(s)	77, 268, 280, 420, 567
Lsp1109I	GCAGC	4 cut(s)	439, 442, 547, 979
LweI	GCATC	2 cut(s)	154, 609
MaeI	CTAG	6 cut(s)	90, 179, 627, 783, 800, 807
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	4 cut(s)	7, 466, 586, 777
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	4 cut(s)	5, 464, 584, 775
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	3 cut(s)	5, 464, 584
MhlI	GDGCHC	2 cut(s)	572, 967
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	401, 586
MmeI	TCCRAC	1 cut(s)	1047
MseI	TTAA	1 cut(s)	977
MslI	CAYNNNNRTG	3 cut(s)	154, 172, 375
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	4 cut(s)	531, 544, 557, 596
MspR9I	CCNGG	3 cut(s)	229, 545, 886
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	229, 886
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	93, 280, 619, 836
NciI	CCSGG	1 cut(s)	545
NdeI	CATATG	1 cut(s)	470
NdeII	GATC	4 cut(s)	5, 464, 584, 775
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	7 cut(s)	463, 487, 609, 617, 677, 850, 899
NlaIV	GGNNCC	2 cut(s)	569, 586
NspI	RCATGY	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	731, 763
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	273, 454, 457, 562, 994
PleI	GAGTC	2 cut(s)	401, 586
PpsI	GAGTC	2 cut(s)	401, 586
Psp6I	CCWGG	2 cut(s)	227, 884
PspGI	CCWGG	2 cut(s)	227, 884
PspN4I	GGNNCC	2 cut(s)	569, 586
PspPI	GGNCC	1 cut(s)	546
PspXI	VCTCGAGB	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	3 cut(s)	5, 464, 584
PsyI	GACNNNGTC	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	670, 857
RsaNI	GTAC	2 cut(s)	669, 856
RseI	CAYNNNNRTG	3 cut(s)	154, 172, 375
SaqAI	TTAA	1 cut(s)	977
SatI	GCNGC	5 cut(s)	272, 453, 456, 561, 993
Sau3AI	GATC	4 cut(s)	5, 464, 584, 775
Sau96I	GGNCC	1 cut(s)	546
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	2 cut(s)	401, 586
ScrFI	CCNGG	3 cut(s)	229, 545, 886
SduI	GDGCHC	2 cut(s)	572, 967
SfaNI	GCATC	2 cut(s)	154, 609
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	3 cut(s)	154, 172, 375
SmlI	CTYRAG	2 cut(s)	250, 292
SmoI	CTYRAG	2 cut(s)	250, 292
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	3 cut(s)	85, 272, 297
SspMI	CTAG	6 cut(s)	90, 179, 627, 783, 800, 807
StyD4I	CCNGG	3 cut(s)	227, 543, 884
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	1067
TaqI	TCGA	3 cut(s)	293, 524, 590
TaqII	GACCGA	1 cut(s)	400
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	731, 763
Tru1I	TTAA	1 cut(s)	977
Tru9I	TTAA	1 cut(s)	977
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	4 cut(s)	452, 455, 560, 992
TspDTI	ATGAA	3 cut(s)	968, 1062, 1101
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	799
XceI	RCATGY	1 cut(s)	609
XhoI	CTCGAG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	6 cut(s)	90, 179, 627, 783, 800, 807
ZraI	GACGTC	1 cut(s)	1065
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.