Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006317.1

Orthogroup ID

OG0006044

Physical Location & Seq

Genomic Coordinates Reverse (-)

67410 .. 77232

Gene Structure 9823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006317.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgaagatgaagatgaagatgaccgatgaagatgacgatgaagaaataaagaagggattggtattcgaccgtcaaattatagcttgtacatcttcacatggagatgagtcaggtacgatgaagatgaccgatgaagatgacgatgaagagttagtaggggcggctctgcctatacttagtcttatctttgattctcttagctcgggaagcccaacttgtcttgcaaaaattcttggtatatatcaggtcactgtcaaacacctaaaaggtgggaaggaaactaaaatggatttgatggtgatggaaaaccttttctttaaaagaaacatatcaagggtatatgatctcaaggggtctgctcgatcacgttacaattctgatactacaggcacaaacaaggtactgttggacatgaatttgttggaatcattacgtacaaaacccatatttcttggaagcaaagcgaagagaagcctggaaagatcaatttggaatgatacatcctttttagcgtctgttgatgtgatggactactcgctgctggttggggtagacgatgagcggaaggaactggttttggggataattgatttcatgagacaatatacgtgggacaagcatttggagacatgggtgaaggcatctggaatacttggtggtccgaagaatgcttccccgacaatcatttctcccaagcaatacaagaaaagatttcggaaggcaatgactacctattttctcactgtacctgatcaatggtcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010118 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

255

Amino Acids

28.88

Weight (kDa)

6.85

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71010
fragaria_vesca	FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320
malus_domestica	MD13G1026200.v1.1 MD16G1029100.v1.1
prunus_persica	Prupe.1G323700_v2.0.a1 Prupe.1G323700_v2.0.a1
pyrus_communis	pycom13g02450 pycom13g02470 pycom16g02480 pycom16g02500
rosa_chinensis	RchiOBHm_Chr4g0441111
rosa_laevigata	RLG00000006113
rosa_multiflora	Rmu_sc0006317.1_g000017 Rmu_sc0027558.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382080
rosa_rugosa	Rorug04G0331100 Rorug04G0331200
rosa_samantha	Rh4AG382800 Rh4BG396600 Rh4CG411700 Rh4DG389400 Rh6CG153000
rosa_wichuraiana	Rw4G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	2 cut(s)	161, 562
AcsI	RAATTY	2 cut(s)	228, 415
AfaI	GTAC	5 cut(s)	88, 115, 402, 436, 747
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	2 cut(s)	83, 201
AluI	AGCT	2 cut(s)	83, 201
Alw26I	GTCTC	2 cut(s)	592, 620
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	228, 415
AspS9I	GGNCC	1 cut(s)	659
AsuHPI	GGTGA	2 cut(s)	310, 646
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	3 cut(s)	289, 295, 520
BciT130I	CCWGG	1 cut(s)	476
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	592, 620
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	162, 539
BlsI	GCNGC	2 cut(s)	163, 540
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	332
BsaAI	YACGTR	2 cut(s)	434, 609
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	592, 620
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	343, 362, 482, 751
BspACI	CCGC	2 cut(s)	161, 562
BspHI	TCATGA	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	729
BsrGI	TGTACA	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	576
BssMI	GATC	4 cut(s)	343, 362, 482, 751
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	4 cut(s)	71, 253, 405, 745
Bst6I	CTCTTC	2 cut(s)	141, 461
BstAUI	TGTACA	1 cut(s)	86
BstBAI	YACGTR	2 cut(s)	434, 609
BstDEI	CTNAG	2 cut(s)	176, 197
BstF5I	GGATG	1 cut(s)	500
BstKTI	GATC	4 cut(s)	346, 365, 485, 754
BstMAI	GTCTC	2 cut(s)	592, 620
BstMBI	GATC	4 cut(s)	343, 362, 482, 751
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	384
BstSNI	TACGTA	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	753
BtsCI	GGATG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	249, 741
CciI	TCATGA	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	659
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	5 cut(s)	87, 114, 401, 435, 746
CspCI	CAANNNNNGTGG	2 cut(s)	590, 625
CviAII	CATG	4 cut(s)	98, 412, 595, 630
CviJI	RGCY	5 cut(s)	83, 164, 201, 210, 474
CviKI_1	RGCY	5 cut(s)	83, 164, 201, 210, 474
CviQI	GTAC	5 cut(s)	87, 114, 401, 435, 746
DdeI	CTNAG	2 cut(s)	176, 197
DpnI	GATC	4 cut(s)	345, 364, 484, 753
DpnII	GATC	4 cut(s)	343, 362, 482, 751
DraI	TTTAAA	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	141, 461
EarI	CTCTTC	2 cut(s)	141, 461
Eco105I	TACGTA	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	474
FaeI	CATG	4 cut(s)	101, 415, 598, 633
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	4 cut(s)	97, 411, 594, 629
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	162, 539
FokI	GGATG	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	162, 539
GluI	GCNGC	2 cut(s)	162, 539
HgaI	GACGC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	101, 415, 598, 633
HinfI	GANTC	3 cut(s)	107, 191, 425
HphI	GGTGA	2 cut(s)	310, 646
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	379, 663, 717
Hpy188III	TCNNGA	4 cut(s)	204, 595, 645, 765
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	5 cut(s)	46, 268, 559, 631, 712
HpyCH4III	ACNGT	4 cut(s)	71, 253, 405, 745
HpyCH4IV	ACGT	3 cut(s)	367, 433, 608
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	176, 197
HpySE526I	ACGT	3 cut(s)	367, 433, 608
Hsp92II	CATG	4 cut(s)	101, 415, 598, 633
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	343, 362, 482, 751
LpnPI	CCDG	9 cut(s)	96, 230, 372, 461, 488, 527, 557, 630, 762
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	1 cut(s)	650
MaeII	ACGT	3 cut(s)	367, 433, 608
MaeIII	GTNAC	2 cut(s)	247, 368
MalI	GATC	4 cut(s)	345, 364, 484, 753
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	4 cut(s)	343, 362, 482, 751
MluCI	AATT	6 cut(s)	75, 228, 373, 415, 486, 585
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	387, 402
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	4 cut(s)	343, 362, 482, 751
NlaIII	CATG	4 cut(s)	101, 415, 598, 633
NmuCI	GTSAC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	594
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	191, 425
PkrI	GCNGC	2 cut(s)	163, 540
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	2 cut(s)	434, 609
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	659
RsaI	GTAC	5 cut(s)	88, 115, 402, 436, 747
RsaNI	GTAC	5 cut(s)	87, 114, 401, 435, 746
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	162, 539
Sau3AI	GATC	4 cut(s)	343, 362, 482, 751
Sau96I	GGNCC	1 cut(s)	659
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	476
SfaNI	GCATC	1 cut(s)	650
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SnaBI	TACGTA	1 cut(s)	434
Sse9I	AATT	6 cut(s)	75, 228, 373, 415, 486, 585
SsiI	CCGC	2 cut(s)	161, 562
StyD4I	CCNGG	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	71, 253, 405, 745
TaiI	ACGT	3 cut(s)	370, 436, 611
TaqI	TCGA	2 cut(s)	66, 361
TaqII	GACCGA	2 cut(s)	38, 143
TasI	AATT	6 cut(s)	75, 228, 373, 415, 486, 585
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	191, 425
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	256, 748
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	2 cut(s)	256, 748
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	2 cut(s)	228, 415
XmiI	GTMKAC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.