RchiOBHm_Chr4g0441111
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
63064905 .. 63072883
7979 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40902

Sequence Viewer

Length: 5199 bp
ATGGGAATACCTGATCGTTGCCTACCAGATCTAATAGAGAAAGTGAGGTCCTGGAATTCTAGGGGAACAAGTGAGTTAAGGTCTTTGTCCGGAGAGTTGGATATGCCCGGTAACGGTTGCAAGATGTGTTGTGATTGCCAGACAGACACCAGTGGAGTTGGTCATAGATATCACTGCCAAAGCTGTGGGCGGTGGATTTGTGGCAAGTGTATTCAGGGTGGTCAGTGGGATGGTTTGACGAGCAGTAGTGATGAGGTTGGAGAGAAGTTCTGCAAGTTTTGTTCTGAGGTTAGATTAAGGAGGGAAGGTGGAAGAAAGTGTAGTGAGAAAGTGCATCCTTCTGCCTCTCCTGAAGATAGCCCTGAACCACCATCCCCGTGTTTTAGCAGCGAAACTATCAGGTGTTGTGCGGATGAGGAATCCACTCGGACTGATCATCTGTCAAAGTATCTTGAAGCCCGGGATATTGGCTATTCTCCTCGTGCTGTCAAGAGTATGACTTCATTTAGTTCTTACCCATCTCCAGTAGCTGTTCATCGCTCTCATAGTAGGAGTGATGAAGAAGAGGCAGAAGATTCGGCAAAGAACTTTTGCAGCCCTTCAAGTGAATATTGTGATGACAATTTGGATATAGATTTAAATAGTGTTAGTGATAGAAGTGAGTTATACAGTTTGACGTCTCTGGGATCAAGTCAGTTTGATTGCTCATCTAGAATTTACTATACTTCTAGTAAAGGGCATTCAGTACAGCAGAGGCATGAAGGCATCCCAGTGACTGAGAGTGATGAACCCTTTGGTCAACAGACTAAGGCTGTTTTAAAAAGGCCTGAGAGACGGACCAAGGATCCAGATATTACTGATGATTGCTCTGATGACTTGTCAGCGTTCCGCAGCCAATATGAGAAACCATTGGATTTTGATAATAATGGTCTCATCTGGTATCCACCTCCTCCCGATGATGAGAATGATGAGGCAGAGAGTAATTTCTTTTCCTATGATGATGAAGATGATGATATTGGAGATTCAGGTGCAATGTTTTCTTCCAGTAGTAGCCTTTCAAGCATGTTTCCTGCAAAGGATAAACAGAATGAGGGTAACAAGGAACCTCTTAGAGCTGTGGTTCAGGGGCATTTTAGAGCGCTTGTATCACAACTCTTACAAGGTGAGGGTTTCACAAGCAAAGAGGATGGAGACGAAGACTGGCTTGACATAGTAACAACAATAGCATGGCAAGCTGCAAATTTTGTTAAACCGGATACTAGCCGAGGAGGTAGTATGGATCCTGGTGATTATGTGAAAGTTAAATGTATTCCATCAGGAAGTCCAAGCGACAGCACCCTTGTAAAAGGAGTAGTTTGTACAAAGAATATAAAGCACAAGCGCATGACTTCACAGTACAAAAATCCTAAATTACTTATTTTAGGGGGAGCACTTGAATATCAGAAAGTTCCAAACCAGTTGGCCTCTTTTGACACGTTACTGCATCAGGAAAACGATCATCTTAGAACGATTATCTCAAAGATAGAAGCTCTTCGTCCAAATGTTCTGCTGGTAGAGAAAAGCGTATCTTCATATGCTCAAGACCATCTGCTAGCAAAGGAAATATCATTAGTTCTGAATGTTAAAAGGCCAGTACTAGAGCGCATAGCTCGGTGCACTGGCGCCATTATTACTCCATCAATCGATGATATCCCTAAAACCCGCTTGGGACATTGTGAATTGTTTCGGTTGGAAAAAATTTCTGAACAGCATGAGTCAGCTAATCAGTTCAACAAGAAACCAGTGAAAACCTTGATGTTTTTTGAAGGGTGTCCAAGGCGTCTTTGTTGCACAGTCCTGCTGAAAGGTGCATGTGTTGAACACCTGAAGAAGATCAAACATGTTGTTCAGTATGCAGTGTTTGCAGCTTATCATTTGTCCCTAGAAACATCATTTCTTGTTGATGAGGGTGCTACTCTGCCCAAGATACCTAGACAGTCAATTTCAGCTAATTCTCTTACTTCGAGCAATTCCAAAGCTGTACCTGATGCTTCTGCTCAAGATGATGATATTTTGGGTTTGATCCCAGACATTGAAGGATCAGAATCTTTGTCCGGCCATCTTGTTCCTGACCATAGTTTTCCTTTATCTAATGGTTCTGTGGACTTTGAGGTTGGAAATGCATTTTCTGATCCCTATAATGATGATTTAGCATCTCATGTGTTTTCGGACACTTCTTCACATCAATACAAGGACATAAAGCCACTGATTGCACATTCTGCTGAGACAAAAAACATTTCCCGACTAGAGTTACAAGAAACCTTGCCTCATGTCGGGAGTCAACACGAGGATATTGATGAATTGACGAGCTCTGAGAGGATTGATCAGAATGAGCCTTCCAGTGAGTACTTCTTTACTGCTGACACTCATCAGAGCATTTTGGTATCCTTTTCAAGCCATTGTGTTCGGAAAGGAACTGTTTGTGAACGCTCCCGACTTCTGCGAATAAAGTTCTATGGCTGCTTTGATAAGCCACTTGGAAGATATCTTCGTGATGACCTATTTGATCGGACATCTTTCTGTCGATCTTGTAAAGAGCCAGCTGAGGCCCATGTTGTATGTTACACCCATCAACAAGGAAACCTTACCATTAATGTGAGACGCTTTCCTTCACTGAAGCTACCTGGGGAAAGAGATGGTAAAATATGGATGTGGCACCGTTGTCTGAGGTGTGCACATATAGATGGAGTTCCGCCGGCAACACGTAGAGTAGTCATGTCAGATGCTGCCTGGGGACTTTCTTTTGGAAAGTTCTTGGAACTTAGCTTTTCAAACCATGCAACTGCTAATCGCGTAGCTACTTGTGGCCATTCATTGCAACGAGACTGTCTCCGTTACTACGGATTTGGGAGCATGGTGGCATTCTTCAGATATTCCCCCATTGATATTCTTTCTGTCCATTTGCCTCCTTCAGTGCTTGAATTCAATGGCCAAGTTCAACCAGATTGGATAAGAAAAGAGGCAACAGAGCTCATGGGAAAGATGGAAACCTTATATGCAGAGATATCTGATATACTTGACTGCATGGAAGAGAAAAATAGATCTTTTGGATGTGAAATGTCAGGGGCAGGTGGATTACAGAACCACATCGTGGAGCTGAAAGATCAGCTTAAAAAGGAAAGGAATGACTACATTGGTTTTCTGCAACCTGCTTTTGTGGGGACTTCTGAACCGGGCCAAATGGCTGTTGTAGACGTTTTGGAGCTAAATCGCTTGAGACGGTCTCTTTTAATTGGTTCTCATGTTTGGGATCGCCAGCTTTATTCATTGGATTCACTTATTCAGAAGAATCCAGTTTCCAGGGCTACAGATGGGGTTGTATCTGTTGGCTACCTGCAAGAGTTGAGTACTGATCCATCTAGTAAGGATGGCAGGCTTGATTTTGCCCATGAGGGTAATAATGTGTCTGAATGTCCAAAATTTCTGGTGCCTCCTGGAAATGATTTGCTGCCAGACAAAGAACCTAGCGCACCAATGTTCGAACGTTCTGAGGAGGATATGCATTCAGATAGGGAAATTGTTGTTGATGAGACATCCTATGAAAGCTTCCCCTCGCATGTTTCTACTCTTTCTGAGAGAATAGATTCTGCATGGACTGGAACTGATCAACTTCTGGCGAAAGCTCAACCACTTCATGCATCACAGGCAGATGGAGTCCAACCTGCTGCTGTTAGGCTGATGAGCCAAAATGATGATCCTCCTTTTAGAAGATTAGTGTCACCAATGAGAGTTCACTCTTTTGATTCTGCAATAAGATTCGAAGAAAGGATTAGGAAAGGGTTGCCGCCTTCTTCGTTGCATTTGTCAACACTAAGATCATTTCATGCTTCTGGAGATTACAGGAGTATGGTTAGAGATCCTCTTTCTAGTGTAACAAGGACTTATTCTCAGGCATTTCCGTTAGAGGCTCAGAAGTTAAACGTAATATTAAGTTCCACACCCTCATTCATCTCCTCTGCATCTCAAATAACTGATGGAGTCAGGTTGCTGCTCTCTCAGACAACCAACAATAATGTAGTTGTTGGTGTTTATGACAGTGAGCCCACAAGCATAATATCATATGCCCTTAGTTCTAAGGATTACGAGGACTGGGTTGGTGATAAGTTGAATGATCATGAGGGGGCATGGAGCATCCATGAAAGCTACAAAGAAGATTCAGCAGCTCCCACCTTTTCACCATGGCAATCTTTTGGTTCTATGGACTTGGATTATATCCACTATGGAAGTTATGGATCTGAAGATGCTTCATCCTCTATGAGTAACTTGTTTGCAGATCCCAAGAAATCTCCACACTTAAGGATTTCCTTTGGGGACGAGTCCTCAAATGCTGGAGGCAAAGTGAAGTTTTCTGTGACTTGTTATTTTGCAAAGCATTTTGACTCTCTTAGGAAGATATGCTGCCCTAATGAAGTGGATTTTGTACGATCCTTGAGCCGCTGCCAGAGATGGAGTGCACAAGGGGGAAAAAGCAATGTATATTTTGCCAAATCATTGGATGATAGATTTATCATAAAGCAAGTTACAAAGACAGAGTTGGAATCCTTTCAGGAATTTGCACCTGAGTATTTTAAATATTTGACAGATTCTCTTAGCTCGGGAAGCCCAACTTGTCTTGCAAAAATTCTTGGTATATATCAGGTCACTGTCAAGCACCTAAAAGGTGGGAGGGAAACTAAAATGGATTTGATGGTGATGGAGAACCTTTTCTTTAAAAGAAACATATCAAGGGTATATGATCTCAAGGGGTCTGCTCGATCACGTTACAATTCTGATACTACAGGCACAAACAAAGTACTGTTGGACATGAATTTGTTGGAATCATTACGTACAAAACCCATATTTCTTGGAAGCAAAGCGAAGAGAAGCCTGGAAAGATCAATTTGGAATGATACATCCTTTTTAGCGTCTGTTGATGTGATGGACTACTCGCTGCTGGTTGGGGTAGACGATGAGCGGAAGGAACTGGTTTTGGGGATAATTGATTTCATGAGACAATATACGTGGGACAAGCATTTGGAGACATGGGTGAAGGCATCTGGAATACTTGGTGGTCCGAAGAATGCTTCCCCGACAATCATTTCTCCCAAGCAATACAAGAAAAGATTCCGGAAGGCAATGACTACCTATTTTCTCACTGTACCTGATCAATGGTCTTCCTGA

Protein Analysis

1732

Amino Acids

193.86

Weight (kDa)

5.71

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 398 - 640 1.8e-31 TCP-1/cpn60 chaperonin family
PIP5K PF01504 1499 - 1666 7.6e-36 Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K PF01504 1663 - 1721 1.2e-07 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3098
AatII GACGTC 1 cut(s) 680
Acc36I ACCTGC 4 cut(s) 3098, 3196, 3381, 3709
AccB1I GGYRCC 3 cut(s) 1661, 2694, 3466
AccB7I CCANNNNNTGG 1 cut(s) 3130
AccBSI CCGCTC 1 cut(s) 4993
AccI GTMKAC 2 cut(s) 3231, 4983
AccII CGCG 1 cut(s) 2832
AccIII TCCGGA 2 cut(s) 89, 5145
AciI CCGC 8 cut(s) 190, 410, 889, 1702, 2732, 3824, 4474, 4993
AclI AACGTT 1 cut(s) 3523
AcoI YGGCCR 3 cut(s) 2095, 2845, 2968
AcsI RAATTY 9 cut(s) 55, 714, 1240, 1737, 2960, 3458, 4589, 4659, 4846
AcuI CTGAAG 6 cut(s) 372, 1886, 2675, 2890, 2934, 4296
AcyI GRCGYC 3 cut(s) 677, 1662, 1819
AdeI CACNNNGTG 1 cut(s) 3130
AfeI AGCGCT 1 cut(s) 1140
AfiI CCNNNNNNNGG 3 cut(s) 113, 2312, 3130
AflII CTTAAG 1 cut(s) 4333
AflIII ACRYGT 3 cut(s) 1473, 1879, 2741
AjnI CCWGG 7 cut(s) 50, 1282, 2662, 2768, 3338, 3472, 4905
Alw21I GWGCWC 6 cut(s) 1432, 1658, 2351, 2716, 3012, 4495
Alw44I GTGCAC 3 cut(s) 1654, 2712, 4491
AlwNI CAGNNNCTG 3 cut(s) 530, 776, 2765
Ama87I CYCGRG 2 cut(s) 459, 4633
Aor13HI TCCGGA 2 cut(s) 89, 5145
Aor51HI AGCGCT 1 cut(s) 1140
AoxI GGCC 8 cut(s) 824, 1461, 1628, 2095, 2586, 2845, 2968, 3214
ApaLI GTGCAC 3 cut(s) 1654, 2712, 4491
ApoI RAATTY 9 cut(s) 55, 714, 1240, 1737, 2960, 3458, 4589, 4659, 4846
AseI ATTAAT 1 cut(s) 2631
Asp700I GAANNNNTTC 6 cut(s) 1530, 1722, 3622, 4581, 4742, 5141
AspLEI GCGC 5 cut(s) 1141, 1383, 1644, 1664, 3509
AspS9I GGNCC 5 cut(s) 48, 837, 2587, 3214, 5090
AsuC2I CCSGG 4 cut(s) 108, 460, 461, 3213
AsuHPI GGTGA 7 cut(s) 1175, 1298, 3750, 4148, 4206, 4741, 5077
AsuII TTCGAA 2 cut(s) 3519, 3798
AsuNHI GCTAGC 1 cut(s) 1591
AvaI CYCGRG 2 cut(s) 459, 4633
AvaII GGWCC 3 cut(s) 48, 837, 5090
BaeGI GKGCMC 3 cut(s) 1658, 2716, 4495
BalI TGGCCA 2 cut(s) 2847, 2970
BamHI GGATCC 2 cut(s) 844, 1279
BanI GGYRCC 3 cut(s) 1661, 2694, 3466
BanII GRGCYC 3 cut(s) 2351, 3012, 4083
BauI CACGAG 2 cut(s) 480, 2324
BbsI GAAGAC 2 cut(s) 1203, 5184
Bbv12I GWGCWC 6 cut(s) 1432, 1658, 2351, 2716, 3012, 4495
BbvCI CCTCAGC 1 cut(s) 2583
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 7 cut(s) 52, 1284, 2664, 2770, 3340, 3474, 4907
BciVI GTATCC 3 cut(s) 951, 1249, 2434
BclI TGATCA 5 cut(s) 433, 2362, 3643, 4150, 5182
BcnI CCSGG 4 cut(s) 108, 460, 461, 3213
BfmI CTRYAG 2 cut(s) 3345, 4815
BfoI RGCGCY 2 cut(s) 1142, 1665
BfrI CTTAAG 1 cut(s) 4333
BfuAI ACCTGC 4 cut(s) 3098, 3196, 3381, 3709
BfuI GTATCC 3 cut(s) 951, 1249, 2434
BglII AGATCT 2 cut(s) 28, 3080
BmcAI AGTACT 4 cut(s) 1635, 2387, 3388, 4833
Bme18I GGWCC 3 cut(s) 48, 837, 5090
BmeT110I CYCGRG 2 cut(s) 459, 4633
BmgT120I GGNCC 5 cut(s) 48, 837, 2587, 3214, 5090
BmiI GGNNCC 6 cut(s) 846, 1104, 1281, 1663, 2696, 3468
BmrI ACTGGG 2 cut(s) 764, 4138
BmtI GCTAGC 1 cut(s) 1595
BmuI ACTGGG 2 cut(s) 764, 4138
BpiI GAAGAC 2 cut(s) 1203, 5184
BplI GAGNNNNNCTC 4 cut(s) 2853, 2885, 3247, 3279
BpmI CTGGAG 3 cut(s) 507, 3891, 4389
Bpu10I CCTNAGC 1 cut(s) 2583
Bpu14I TTCGAA 2 cut(s) 3519, 3798
BpuEI CTTGAG 5 cut(s) 1563, 2022, 3274, 4489, 4763
BpuMI CCSGG 4 cut(s) 108, 460, 461, 3213
Bsa29I ATCGAT 1 cut(s) 1683
BsaAI YACGTR 3 cut(s) 2744, 4865, 5040
BsaBI GATNNNNATC 1 cut(s) 2083
BsaHI GRCGYC 3 cut(s) 677, 1662, 1819
BsaI GGTCTC 2 cut(s) 935, 3267
BsaJI CCNNGG 8 cut(s) 459, 840, 1264, 1814, 2663, 2769, 3339, 4217
BsaWI WCCGGW 3 cut(s) 89, 1252, 5145
BsaXI ACNNNNNCTCC 4 cut(s) 292, 322, 4362, 4392
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 2312, 3130
Bse118I RCCGGY 1 cut(s) 2734
Bse3DI GCAATG 4 cut(s) 1038, 2852, 4516, 5160
Bse8I GATNNNNATC 1 cut(s) 2083
BseAI TCCGGA 2 cut(s) 89, 5145
BseBI CCWGG 7 cut(s) 52, 1284, 2664, 2770, 3340, 3474, 4907
BseCI ATCGAT 1 cut(s) 1683
BseDI CCNNGG 8 cut(s) 459, 840, 1264, 1814, 2663, 2769, 3339, 4217
BseJI GATNNNNATC 1 cut(s) 2083
BseLI CCNNNNNNNGG 3 cut(s) 113, 2312, 3130
BseMI GCAATG 4 cut(s) 1038, 2852, 4516, 5160
BseRI GAGGAG 5 cut(s) 468, 939, 1281, 3545, 3982
BseSI GKGCMC 3 cut(s) 1658, 2716, 4495
Bsh1236I CGCG 1 cut(s) 2832
BshFI GGCC 8 cut(s) 826, 1463, 1630, 2097, 2588, 2847, 2970, 3216
BshNI GGYRCC 3 cut(s) 1661, 2694, 3466
BshVI ATCGAT 1 cut(s) 1683
BsiHKAI GWGCWC 6 cut(s) 1432, 1658, 2351, 2716, 3012, 4495
BsiHKCI CYCGRG 2 cut(s) 459, 4633
BsiSI CCGG 8 cut(s) 90, 108, 460, 1253, 2094, 2735, 3212, 5146
BslFI GGGAC 6 cut(s) 1722, 1903, 2787, 3214, 4364, 5057
BslI CCNNNNNNNGG 3 cut(s) 113, 2312, 3130
BsmBI CGTCTC 5 cut(s) 684, 826, 1185, 2632, 3250
BsmFI GGGAC 6 cut(s) 1722, 1903, 2787, 3214, 4364, 5057
BsmI GAATGC 4 cut(s) 739, 2900, 3541, 5104
BsnI GGCC 8 cut(s) 826, 1463, 1630, 2097, 2588, 2847, 2970, 3216
Bso31I GGTCTC 2 cut(s) 935, 3267
BsoBI CYCGRG 2 cut(s) 459, 4633
Bsp119I TTCGAA 2 cut(s) 3519, 3798
Bsp1286I GDGCHC 7 cut(s) 1432, 1658, 2351, 2716, 3012, 4083, 4495
Bsp13I TCCGGA 2 cut(s) 89, 5145
Bsp1407I TGTACA 1 cut(s) 1358
Bsp19I CCATGG 1 cut(s) 4217
BspACI CCGC 8 cut(s) 190, 410, 889, 1702, 2732, 3824, 4474, 4993
BspANI GGCC 8 cut(s) 826, 1463, 1630, 2097, 2588, 2847, 2970, 3216
BspDI ATCGAT 1 cut(s) 1683
BspEI TCCGGA 2 cut(s) 89, 5145
BspFNI CGCG 1 cut(s) 2832
BspHI TCATGA 2 cut(s) 4153, 5025
BspLI GGNNCC 6 cut(s) 846, 1104, 1281, 1663, 2696, 3468
BspMI ACCTGC 4 cut(s) 3098, 3196, 3381, 3709
BspOI GCTAGC 1 cut(s) 1595
BspQI GCTCTTC 1 cut(s) 1536
BspT104I TTCGAA 2 cut(s) 3519, 3798
BspT107I GGYRCC 3 cut(s) 1661, 2694, 3466
BspTI CTTAAG 1 cut(s) 4333
BspTNI GGTCTC 2 cut(s) 935, 3267
BsrBI CCGCTC 1 cut(s) 4993
BsrDI GCAATG 4 cut(s) 1038, 2852, 4516, 5160
BsrFI RCCGGY 1 cut(s) 2734
BsrGI TGTACA 1 cut(s) 1358
BssAI RCCGGY 1 cut(s) 2734
BssECI CCNNGG 8 cut(s) 459, 840, 1264, 1814, 2663, 2769, 3339, 4217
BssNI GRCGYC 3 cut(s) 677, 1662, 1819
BssSI CACGAG 2 cut(s) 480, 2324
BssT1I CCWWGG 3 cut(s) 840, 1814, 4217
Bst2BI CACGAG 2 cut(s) 480, 2324
Bst2UI CCWGG 7 cut(s) 52, 1284, 2664, 2770, 3340, 3474, 4907
Bst6I CTCTTC 4 cut(s) 558, 1536, 3063, 4892
BstACI GRCGYC 3 cut(s) 677, 1662, 1819
BstAFI CTTAAG 1 cut(s) 4333
BstAPI GCANNNNNTGC 2 cut(s) 1901, 2258
BstAUI TGTACA 1 cut(s) 1358
BstBAI YACGTR 3 cut(s) 2744, 4865, 5040
BstBI TTCGAA 2 cut(s) 3519, 3798
BstC8I GCNNGC 6 cut(s) 1233, 1593, 2580, 2736, 3296, 3413
BstDSI CCRYGG 1 cut(s) 4217
BstFNI CGCG 1 cut(s) 2832
BstH2I RGCGCY 2 cut(s) 1142, 1665
BstHHI GCGC 5 cut(s) 1141, 1383, 1644, 1664, 3509
BstMWI GCNNNNNNNGC 6 cut(s) 1059, 1232, 1901, 2258, 3683, 4638
BstNI CCWGG 7 cut(s) 52, 1284, 2664, 2770, 3340, 3474, 4907
BstNSI RCATGY 4 cut(s) 1066, 1854, 1883, 3599
BstSFI CTRYAG 2 cut(s) 3345, 4815
BstSLI GKGCMC 3 cut(s) 1658, 2716, 4495
BstSNI TACGTA 1 cut(s) 4865
BstUI CGCG 1 cut(s) 2832
BstV2I GAAGAC 2 cut(s) 1203, 5184
BstX2I RGATCY 7 cut(s) 28, 844, 1279, 3080, 3895, 4271, 4312
BstXI CCANNNNNNTGG 2 cut(s) 185, 4531
BstYI RGATCY 7 cut(s) 28, 844, 1279, 3080, 3895, 4271, 4312
Bsu15I ATCGAT 1 cut(s) 1683
BsuI GTATCC 3 cut(s) 951, 1249, 2434
BsuRI GGCC 8 cut(s) 826, 1463, 1630, 2097, 2588, 2847, 2970, 3216
BsuTUI ATCGAT 1 cut(s) 1683
BtgI CCRYGG 1 cut(s) 4217
BtgZI GCGATG 1 cut(s) 521
BtsI GCAGTG 2 cut(s) 172, 1902
BveI ACCTGC 4 cut(s) 3098, 3196, 3381, 3709
Cac8I GCNNGC 6 cut(s) 1233, 1593, 2580, 2736, 3296, 3413
CaiI CAGNNNCTG 3 cut(s) 530, 776, 2765
CciI TCATGA 2 cut(s) 4153, 5025
CfoI GCGC 5 cut(s) 1141, 1383, 1644, 1664, 3509
Cfr10I RCCGGY 1 cut(s) 2734
Cfr13I GGNCC 5 cut(s) 48, 837, 2587, 3214, 5090
Cfr9I CCCGGG 1 cut(s) 459
ClaI ATCGAT 1 cut(s) 1683
CseI GACGC 3 cut(s) 1808, 2649, 4932
CspCI CAANNNNNGTGG 2 cut(s) 5021, 5056
DinI GGCGCC 1 cut(s) 1663
DraI TTTAAA 4 cut(s) 639, 819, 4609, 4750
DraIII CACNNNGTG 1 cut(s) 3130
EaeI YGGCCR 3 cut(s) 2095, 2845, 2968
Eam1104I CTCTTC 4 cut(s) 558, 1536, 3063, 4892
EarI CTCTTC 4 cut(s) 558, 1536, 3063, 4892
EciI GGCGGA 1 cut(s) 2721
Ecl136II GAGCTC 2 cut(s) 2349, 3010
Eco105I TACGTA 1 cut(s) 4865
Eco130I CCWWGG 3 cut(s) 840, 1814, 4217
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 3 cut(s) 2351, 3012, 4083
Eco31I GGTCTC 2 cut(s) 935, 3267
Eco32I GATATC 4 cut(s) 170, 1690, 2525, 3045
Eco47I GGWCC 3 cut(s) 48, 837, 5090
Eco47III AGCGCT 1 cut(s) 1140
Eco53kI GAGCTC 2 cut(s) 2349, 3010
Eco57I CTGAAG 6 cut(s) 372, 1886, 2675, 2890, 2934, 4296
Eco88I CYCGRG 2 cut(s) 459, 4633
EcoICRI GAGCTC 2 cut(s) 2349, 3010
EcoO109I RGGNCCY 1 cut(s) 48
EcoRI GAATTC 2 cut(s) 55, 2960
EcoRII CCWGG 7 cut(s) 50, 1282, 2662, 2768, 3338, 3472, 4905
EcoRV GATATC 4 cut(s) 170, 1690, 2525, 3045
EcoT14I CCWWGG 3 cut(s) 840, 1814, 4217
EcoT22I ATGCAT 3 cut(s) 2164, 3543, 3679
EcoT38I GRGCYC 3 cut(s) 2351, 3012, 4083
EgeI GGCGCC 1 cut(s) 1663
EheI GGCGCC 1 cut(s) 1663
ErhI CCWWGG 3 cut(s) 840, 1814, 4217
Esp3I CGTCTC 5 cut(s) 684, 826, 1185, 2632, 3250
FaqI GGGAC 6 cut(s) 1722, 1903, 2787, 3214, 4364, 5057
FauI CCCGC 1 cut(s) 1709
FauNDI CATATG 2 cut(s) 1573, 4099
FbaI TGATCA 5 cut(s) 433, 2362, 3643, 4150, 5182
FblI GTMKAC 2 cut(s) 3231, 4983
FriOI GRGCYC 3 cut(s) 2351, 3012, 4083
GlaI GCGC 5 cut(s) 1140, 1382, 1643, 1663, 3508
GsuI CTGGAG 3 cut(s) 507, 3891, 4389
HaeII RGCGCY 2 cut(s) 1142, 1665
HaeIII GGCC 8 cut(s) 826, 1463, 1630, 2097, 2588, 2847, 2970, 3216
HapII CCGG 8 cut(s) 90, 108, 460, 1253, 2094, 2735, 3212, 5146
HgaI GACGC 3 cut(s) 1808, 2649, 4932
HhaI GCGC 5 cut(s) 1141, 1383, 1644, 1664, 3509
Hin1I GRCGYC 3 cut(s) 677, 1662, 1819
Hin6I GCGC 5 cut(s) 1139, 1381, 1642, 1662, 3507
HinP1I GCGC 5 cut(s) 1139, 1381, 1642, 1662, 3507
HincII GTYRAC 3 cut(s) 800, 2321, 3846
HindII GTYRAC 3 cut(s) 800, 2321, 3846
HindIII AAGCTT 1 cut(s) 3583
HpaII CCGG 8 cut(s) 90, 108, 460, 1253, 2094, 2735, 3212, 5146
HphI GGTGA 7 cut(s) 1175, 1298, 3750, 4148, 4206, 4741, 5077
HpyCH4IV ACGT 9 cut(s) 677, 1475, 2743, 3234, 3523, 3960, 4798, 4864, 5039
HpyF10VI GCNNNNNNNGC 6 cut(s) 1059, 1232, 1901, 2258, 3683, 4638
HpySE526I ACGT 9 cut(s) 677, 1475, 2743, 3234, 3523, 3960, 4798, 4864, 5039
Hsp92I GRCGYC 3 cut(s) 677, 1662, 1819
HspAI GCGC 5 cut(s) 1139, 1381, 1642, 1662, 3507
KasI GGCGCC 1 cut(s) 1661
Kpn2I TCCGGA 2 cut(s) 89, 5145
KroI GCCGGC 1 cut(s) 2734
KroNI GCCGGC 1 cut(s) 2736
Ksp22I TGATCA 5 cut(s) 433, 2362, 3643, 4150, 5182
LguI GCTCTTC 1 cut(s) 1536
LmnI GCTCC 7 cut(s) 1427, 2474, 2889, 3133, 3241, 4167, 4207
MaeII ACGT 9 cut(s) 677, 1475, 2743, 3234, 3523, 3960, 4798, 4864, 5039
MbiI CCGCTC 1 cut(s) 4993
MflI RGATCY 7 cut(s) 28, 844, 1279, 3080, 3895, 4271, 4312
MhlI GDGCHC 7 cut(s) 1432, 1658, 2351, 2716, 3012, 4083, 4495
MlsI TGGCCA 2 cut(s) 2847, 2970
MluNI TGGCCA 2 cut(s) 2847, 2970
Mly113I GGCGCC 1 cut(s) 1662
MlyI GAGTC 6 cut(s) 1763, 2326, 3702, 4026, 4364, 4412
MmeI TCCRAC 8 cut(s) 78, 238, 1710, 2134, 3721, 4554, 4818, 4833
Mox20I TGGCCA 2 cut(s) 2847, 2970
Mph1103I ATGCAT 3 cut(s) 2164, 3543, 3679
MroI TCCGGA 2 cut(s) 89, 5145
MroNI GCCGGC 1 cut(s) 2734
MroXI GAANNNNTTC 6 cut(s) 1530, 1722, 3622, 4581, 4742, 5141
MscI TGGCCA 2 cut(s) 2847, 2970
MslI CAYNNNNRTG 4 cut(s) 376, 770, 2633, 2721
Msp20I TGGCCA 2 cut(s) 2847, 2970
MspA1I CMGCKG 2 cut(s) 2582, 4476
MspCI CTTAAG 1 cut(s) 4333
MspI CCGG 8 cut(s) 90, 108, 460, 1253, 2094, 2735, 3212, 5146
Mva1269I GAATGC 4 cut(s) 739, 2900, 3541, 5104
MvaI CCWGG 7 cut(s) 52, 1284, 2664, 2770, 3340, 3474, 4907
MvnI CGCG 1 cut(s) 2832
MwoI GCNNNNNNNGC 6 cut(s) 1059, 1232, 1901, 2258, 3683, 4638
NaeI GCCGGC 1 cut(s) 2736
NarI GGCGCC 1 cut(s) 1662
NciI CCSGG 4 cut(s) 108, 460, 461, 3213
NcoI CCATGG 1 cut(s) 4217
NdeI CATATG 2 cut(s) 1573, 4099
NgoMIV GCCGGC 1 cut(s) 2734
NheI GCTAGC 1 cut(s) 1591
NlaIV GGNNCC 6 cut(s) 846, 1104, 1281, 1663, 2696, 3468
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 4 cut(s) 772, 3756, 4390, 4678
NsiI ATGCAT 3 cut(s) 2164, 3543, 3679
NspI RCATGY 4 cut(s) 1066, 1854, 1883, 3599
NspV TTCGAA 2 cut(s) 3519, 3798
PagI TCATGA 2 cut(s) 4153, 5025
PaqCI CACCTGC 1 cut(s) 3098
PceI AGGCCT 1 cut(s) 826
PciI ACATGT 1 cut(s) 1879
PciSI GCTCTTC 1 cut(s) 1536
PctI GAATGC 4 cut(s) 739, 2900, 3541, 5104
PdiI GCCGGC 1 cut(s) 2736
PdmI GAANNNNTTC 6 cut(s) 1530, 1722, 3622, 4581, 4742, 5141
PflMI CCANNNNNTGG 1 cut(s) 3130
PfoI TCCNGGA 2 cut(s) 50, 3472
PleI GAGTC 6 cut(s) 1762, 2325, 3701, 4025, 4363, 4412
PluTI GGCGCC 1 cut(s) 1665
PpsI GAGTC 6 cut(s) 1762, 2325, 3701, 4025, 4363, 4412
Ppu21I YACGTR 3 cut(s) 2744, 4865, 5040
PpuMI RGGWCCY 1 cut(s) 48
PscI ACATGT 1 cut(s) 1879
PshBI ATTAAT 1 cut(s) 2631
Psp124BI GAGCTC 2 cut(s) 2351, 3012
Psp1406I AACGTT 1 cut(s) 3523
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 7 cut(s) 50, 1282, 2662, 2768, 3338, 3472, 4905
PspGI CCWGG 7 cut(s) 50, 1282, 2662, 2768, 3338, 3472, 4905
PspN4I GGNNCC 6 cut(s) 846, 1104, 1281, 1663, 2696, 3468
PspPI GGNCC 5 cut(s) 48, 837, 2587, 3214, 5090
PspPPI RGGWCCY 1 cut(s) 48
PstNI CAGNNNCTG 3 cut(s) 530, 776, 2765
PsuI RGATCY 7 cut(s) 28, 844, 1279, 3080, 3895, 4271, 4312
PvuII CAGCTG 1 cut(s) 2582
RseI CAYNNNNRTG 4 cut(s) 376, 770, 2633, 2721
SacI GAGCTC 2 cut(s) 2351, 3012
SapI GCTCTTC 1 cut(s) 1536
Sau96I GGNCC 5 cut(s) 48, 837, 2587, 3214, 5090
ScaI AGTACT 4 cut(s) 1635, 2387, 3388, 4833
SchI GAGTC 6 cut(s) 1763, 2326, 3702, 4026, 4364, 4412
SduI GDGCHC 7 cut(s) 1432, 1658, 2351, 2716, 3012, 4083, 4495
SfcI CTRYAG 2 cut(s) 3345, 4815
SfoI GGCGCC 1 cut(s) 1663
SfuI TTCGAA 2 cut(s) 3519, 3798
SinI GGWCC 3 cut(s) 48, 837, 5090
SmaI CCCGGG 1 cut(s) 461
SmiI ATTTAAAT 1 cut(s) 639
SmiMI CAYNNNNRTG 4 cut(s) 376, 770, 2633, 2721
SmlI CTYRAG 6 cut(s) 1578, 2037, 3253, 4333, 4468, 4778
SmoI CTYRAG 6 cut(s) 1578, 2037, 3253, 4333, 4468, 4778
SnaBI TACGTA 1 cut(s) 4865
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 8 cut(s) 190, 410, 889, 1702, 2732, 3824, 4474, 4993
SspDI GGCGCC 1 cut(s) 1661
SspI AATATT 3 cut(s) 611, 3966, 4613
SstI GAGCTC 2 cut(s) 2351, 3012
StuI AGGCCT 1 cut(s) 826
StyI CCWWGG 3 cut(s) 840, 1814, 4217
SwaI ATTTAAAT 1 cut(s) 639
TaiI ACGT 9 cut(s) 680, 1478, 2746, 3237, 3526, 3963, 4801, 4867, 5042
TaqI TCGA 6 cut(s) 1683, 2003, 2563, 3519, 3798, 4792
TatI WGTACW 7 cut(s) 745, 1358, 1395, 1633, 2385, 3386, 4831
TauI GCSGC 2 cut(s) 3826, 4476
TseFI GTSAC 4 cut(s) 772, 3756, 4390, 4678
Tsp45I GTSAC 4 cut(s) 772, 3756, 4390, 4678
TspGWI ACGGA 4 cut(s) 850, 2861, 2895, 3927
TspMI CCCGGG 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 3130
Vha464I CTTAAG 1 cut(s) 4333
VneI GTGCAC 3 cut(s) 1654, 2712, 4491
VpaK11BI GGWCC 3 cut(s) 48, 837, 5090
VspI ATTAAT 1 cut(s) 2631
XapI RAATTY 9 cut(s) 55, 714, 1240, 1737, 2960, 3458, 4589, 4659, 4846
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 4 cut(s) 1066, 1854, 1883, 3599
XmaI CCCGGG 1 cut(s) 459
XmiI GTMKAC 2 cut(s) 3231, 4983
XmnI GAANNNNTTC 6 cut(s) 1530, 1722, 3622, 4581, 4742, 5141
ZraI GACGTC 1 cut(s) 678
ZrmI AGTACT 4 cut(s) 1635, 2387, 3388, 4833
Zsp2I ATGCAT 3 cut(s) 2164, 3543, 3679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.