Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027558.1

Orthogroup ID

OG0006044

Physical Location & Seq

Genomic Coordinates Forward (+)

2555 .. 10192

Gene Structure 7638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027558.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5534 bp

atgatcaagaggagctgcggcggcgctgctgtggttgctggtagtgaaagcggcggcggaggaggaagaggaagaggaagaaggagtgagagagcggcaaatgtgtttctcgagatgcgagctgatgattttgattccggcagaaaaggaaccttctccacccgtagagatcgctgtgatatgctccaatcggtcaccgggtgcattcttgaagactccgggattggacagaagagaataaagaatttagattggaggaagctggaaaaagaaggtagagctgcttctaattcttgttggtggattgttacaattctatgggaatatctttctatgggaatacctgatcgttgcctaccagatctaatagagaaagtgatgtcctggaattctaggggaacaagtgagttgaggtctttgtctggagagttgaatatgcccggtaacggtaacggttgcaagatgtgttgtgattgccagacagacaccagtggagttggtcatagatatcactgccaaaggtgtgggcggtggatttgtggcaagtgtattcagggtggtgagtgggatggtttgacgagcagtgatgaggttggagagaagttctgcaagttttgttctgaggttagattaaggagggaaggtggaagaaagtgtagtgagaaagtgcatccttctgcctctcctgaagaaagccctgaaccaccatccccctgttttagcagcgaaactatcaggtgttgtgcggatgatgaatccactcggactgatcatctgtcaaagtatcttgaagcccgggatgttggctattctccccgtgctgtcaagagtatgacttcatttagttcttacccatctccagtagctgttcatcgctcgcatagtaggagtgatgaagaagaggcagaagatttggcaaagaacttttgcagcccttcaagtgaatattgtgatgacaatttggatatagatttaaatagtgttagtgctagaagtgagttatacagtttgacgtctctgggatcaagtcagtttgattgctcatctagaatttactatacttctagtaaagggcattcagtacagcagaggcatgaaggcatcccagcgactcagagtgatgaaccctttggtcgacagactaaggctgttttaaaaaggcctgagagacggaccgaggatccagatattactgatgattgctctgatgacttgtcagcgttccgcagccaatatgggaaaccattggattttgataataatggtctcatctggtatccacctcctcctgatgatgagaatgatgaggcagagagtaatttcttttcctatgatgatgaagatgatgatattggagattcaggtgcaatgttttcttccagtagtagcctttcaagcatgtttcctgcaaaggataaacagaatgagggtaacaaggaacctcttagagctgtggttcaggggcattttagagcgcttgtatcacaactcttacaaggtgagggtttcatgagcaaagaggatggagacgaagactggcttgacatagtaacaacaatagcatggcaagctgcaaattttgttaaaccggatactagccgaggaggtagtatggatcctggtgattatgtgaaagttaaatgtattccatcaggaagtccaagcgacagcacccttgtaaaaggagtagtttgtacaaagaatataaagcacaagcgcatgacttcacagtacaaaaatcctagattacttattttagggggagcacttgaatatcagaaagttccaaaccagttggcctcttttgacacgttactgcatcaggaaaacgatcatcttagaacgattatctcaaagatagaagctcttcgtccaaatgttctgctggtagagaaaagtgtatcttcatatgctcaagaccatctgctagcaaaggaaatatcattagttctgaatgttaaaaggccattactagagcgcatagctcggtgcactggcgcccttattactccatcaatcgatgatatccctaaaacccgcttgggacattgtgaattgtttcggttggaaaaaatttctgaacagcatgagtcagctaatcagttcaacaagaaaccagtgaaaaccttgatgttttttgaagggtgtccaaggcgtctttgttgcacagtcctgctgaaaggtgcatgtgttgaacaactgaagaagatcaaacatgttgttcagtatgcagtgtttgcagcttatcatttatcccttgaaacatcatttcttgttgatgagggtgctactctgcccaagatacctagacagtcaatttcagctaattctcttacttcgagcaattccaaagctgtagctgatgcttctgctcaagatgatgatattttgggtttgatcccagaaattgaaggatcagaatctttgtccggccatcttgttcctgaccatagttttcctttatctaatggttctgtggactttgaggttggaaatgcattttctgatccctataatgatgatttagcatcccatgtgttttcggacacttcttcacatcaatacaaggacattaaggcactgattgcacattctgctgagacaaaaaacatttcccgactggagttgcaagaaaccttgcctcatgtcgggagtcaacacgaggatattgatgaattgacgagctctgagaggattgatcagaatgagccttccagtgagtacttctctactgctgacactcatcagagcattttggtatccttttcaagccattgtgttcggaaaggaactgtttgtgaacgctcccgacttctgcgaataaagttctatggctgctttgataagccacttggaagatatcttcgtgatgacctatttgatcggacatctttctgtcgatcttgtaaagagccagctgaggcccatgttgtatgttacacccatcaacaaggaaaccttaccattaatgtgagatgctttccatcactgaagctacctggggaaagagatggtaaaatatggatgtggcaccgttgtctgaggtgtgcacatatagatggagttccgccggcaacacgtagagtagtcatgtcagatgctgcctggggactttcttttggaaagttcttggaacttagcttttcaaaccatgcaactgctaatcgtgtagctacttgtggccattcattgcaacgagactgtctccgttactacggatttgggagcatggtggcattcttcagatattcccccattgatattctttctgtccatttgcctccttcagtgcttgaattcaatggccaagttcaaccagattggataagaaaagaggcaacagagctcatgggaaagatggaaaccttatatgcagagatatctgacatacttgactgcatggaagagaaaaatagatcttttggatgtgaaatgtcaggggcaggtggattacagaaccacatcgtggagctgaaagatcagcttaaaaaggaaaggaatgactacattggttttctgcaacctgcttttgtggagacttctgaacctggccaaatggctgttgtagacgttttggagctaaatcgcttgagacggtctcttttaattggttctcatgtttgggatcgccagctttattcattggattcacttattcagaagaatccagtttccagggctacagatggggttgtatctgttggctacctgcaagagttgagtactgatccatctagtaaggatggcaggcttgattttgcccatgaaggtaataatgtgtctgaatgtccaaaatttctggtgcctcctggaaatgacttgctgccagacaaagaacctagcgcaccaatgtttgaacgttctgaggaggatatgcattcggatagggaaattgttgttgatgagacatcctatgaaagcttcccctcgcatgtttctactctttctgagagaatagattctgcctggactggaactgatcaacttctggcgaaagctcaaccacttcatgcatcacaggcagatggagtccaacctgctgctgttaggctgatgagccaaaatgatgatcctccttttaggagattagtgtcaccaatgagagttcactcttttgattctgcagtaagattcgaagaaaggattaggaaagggttaccgccttcttcattgcatctgtcaacactaagatcatttcatgcttctggagattacaggagtatggttagagatcctctttctagtgtaacaaggacttattctcaggcatttccgttagaggctcagaagttaaacgtaatactaagttccacaccctcatttatctcctctgcatctcaaataactgatggagtcaggttgctgctctctcagacaaccagcaataatgtagttgttggtgtttatgacagcgagcccacaagcataatatcgtatgcccttagttctaaggattacgaggactgggttggtgataagttgaatgatcatgagggggcatggagcctccatgaaagctacaaagaagattcagcagctcccaccttttcaccatggcaatcttttggttctatggacttggattatatccactatggaagttatggatctgaagatgcttcatcctctatgagtaacttgtttgcagatcccaagaaatctccacacttaaggatttccttcggggacgagtcctcaaatgctggaggcaaagtgaagttttctgtgacttgttattttgcaaagcattttgactctcttaggaagatatgctgccctaatgaagtggattttgtacgatccttgagccgctgccagagatggagtgcacaagggggaaaaagcaatgtatattttgccaaatcattggatgatagatttatcataaagcaagttacaaagacagagttggaatcttttcaggaatttgtacctgagtattttaaatatttgacagattctcttagctcgggaagcccaacttgtcttgcaaaaattcttggtatatatcaggtcactgtcaaacacctaaaaggtgggaaggaaactaaaatggatttgatggtgatggagaaccttttctttaaaagaaacatatcaagggtatatgatctcaaggggtctgctcgatcacgttacaattctgatactacaggcacaaacaaggtactgttggacatgaatttgttggaatcattacgtacaaaacccatatttcttggaagcaaagcgaagagaagcctggaaagatcaatttggaatgatacatcctttttagcgtctgttgatgtgatggactactcgctgctggttggggtagacgatgagcggaaggaactggttttggggataattgatttcatgagacaatatacgtgggacaagcatttggagacatgggtgaaggcatctggaatacttggtggtccgaagaatgcttccccgacaatcatttctcccaagcaatacaagaaaagatttcggaaggcaatgactacctattttctcactgtacctgatcaatggtcttcctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010118 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

1844

Amino Acids

206.06

Weight (kDa)

5.84

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71010
fragaria_vesca	FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320
malus_domestica	MD13G1026200.v1.1 MD16G1029100.v1.1
prunus_persica	Prupe.1G323700_v2.0.a1 Prupe.1G323700_v2.0.a1
pyrus_communis	pycom13g02450 pycom13g02470 pycom16g02480 pycom16g02500
rosa_chinensis	RchiOBHm_Chr4g0441111
rosa_laevigata	RLG00000006113
rosa_multiflora	Rmu_sc0006317.1_g000017 Rmu_sc0027558.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382080
rosa_rugosa	Rorug04G0331100 Rorug04G0331200
rosa_samantha	Rh4AG382800 Rh4BG396600 Rh4CG411700 Rh4DG389400 Rh6CG153000
rosa_wichuraiana	Rw4G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3434
AatII	GACGTC	1 cut(s)	1016
Acc36I	ACCTGC	4 cut(s)	3434, 3532, 3717, 4045
AccB1I	GGYRCC	3 cut(s)	1997, 3030, 3802
AccB7I	CCANNNNNTGG	1 cut(s)	3466
AccBSI	CCGCTC	2 cut(s)	95, 5329
AccI	GTMKAC	3 cut(s)	1135, 3567, 5319
AclI	AACGTT	1 cut(s)	3859
AcoI	YGGCCR	4 cut(s)	2431, 3181, 3304, 3550
AcuI	CTGAAG	6 cut(s)	708, 2222, 3011, 3226, 3270, 4632
AcyI	GRCGYC	3 cut(s)	1013, 1998, 2155
AdeI	CACNNNGTG	2 cut(s)	201, 3466
AfeI	AGCGCT	1 cut(s)	1476
AfiI	CCNNNNNNNGG	3 cut(s)	446, 2648, 3466
AflII	CTTAAG	1 cut(s)	4669
AflIII	ACRYGT	3 cut(s)	1809, 2215, 3077
AjnI	CCWGG	9 cut(s)	383, 1618, 2998, 3104, 3547, 3674, 3808, 3965, 5241
Alw21I	GWGCWC	6 cut(s)	1768, 1994, 2687, 3052, 3348, 4831
Alw44I	GTGCAC	3 cut(s)	1990, 3048, 4827
AlwNI	CAGNNNCTG	2 cut(s)	866, 3101
Ama87I	CYCGRG	3 cut(s)	110, 795, 4969
Aor51HI	AGCGCT	1 cut(s)	1476
AoxI	GGCC	8 cut(s)	1160, 1797, 1964, 2431, 2922, 3181, 3304, 3550
ApaLI	GTGCAC	3 cut(s)	1990, 3048, 4827
AseI	ATTAAT	1 cut(s)	2967
Asp700I	GAANNNNTTC	5 cut(s)	1866, 2058, 3958, 4917, 5078
AspLEI	GCGC	6 cut(s)	26, 1477, 1719, 1980, 2000, 3845
AspS9I	GGNCC	3 cut(s)	1173, 2923, 5426
AsuC2I	CCSGG	5 cut(s)	199, 220, 441, 796, 797
AsuHPI	GGTGA	9 cut(s)	187, 572, 1511, 1634, 4086, 4484, 4542, 5077, 5413
AsuII	TTCGAA	1 cut(s)	4134
AsuNHI	GCTAGC	1 cut(s)	1927
AvaI	CYCGRG	3 cut(s)	110, 795, 4969
AvaII	GGWCC	2 cut(s)	1173, 5426
BaeGI	GKGCMC	3 cut(s)	1994, 3052, 4831
BalI	TGGCCA	3 cut(s)	3183, 3306, 3552
BamHI	GGATCC	2 cut(s)	1180, 1615
BanI	GGYRCC	3 cut(s)	1997, 3030, 3802
BanII	GRGCYC	3 cut(s)	2687, 3348, 4419
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BauI	CACGAG	1 cut(s)	2660
BbsI	GAAGAC	3 cut(s)	219, 1539, 5520
Bbv12I	GWGCWC	6 cut(s)	1768, 1994, 2687, 3052, 3348, 4831
BbvCI	CCTCAGC	1 cut(s)	2919
BciT130I	CCWGG	9 cut(s)	385, 1620, 3000, 3106, 3549, 3676, 3810, 3967, 5243
BciVI	GTATCC	3 cut(s)	1287, 1585, 2770
BclI	TGATCA	6 cut(s)	3, 769, 2698, 3979, 4486, 5518
BcnI	CCSGG	5 cut(s)	199, 220, 441, 796, 797
BfmI	CTRYAG	4 cut(s)	2355, 3681, 4122, 5151
BfoI	RGCGCY	3 cut(s)	27, 1478, 2001
BfrI	CTTAAG	1 cut(s)	4669
BfuAI	ACCTGC	4 cut(s)	3434, 3532, 3717, 4045
BfuI	GTATCC	3 cut(s)	1287, 1585, 2770
BglII	AGATCT	2 cut(s)	361, 3416
BmcAI	AGTACT	2 cut(s)	2723, 3724
Bme18I	GGWCC	2 cut(s)	1173, 5426
BmeT110I	CYCGRG	3 cut(s)	110, 795, 4969
BmgT120I	GGNCC	3 cut(s)	1173, 2923, 5426
BmiI	GGNNCC	8 cut(s)	151, 1182, 1440, 1617, 1999, 3032, 3804, 4505
BmrI	ACTGGG	1 cut(s)	4474
BmtI	GCTAGC	1 cut(s)	1931
BmuI	ACTGGG	1 cut(s)	4474
BpiI	GAAGAC	3 cut(s)	219, 1539, 5520
BplI	GAGNNNNNCTC	6 cut(s)	2711, 2743, 3189, 3221, 3583, 3615
BpmI	CTGGAG	5 cut(s)	444, 843, 2642, 4227, 4725
Bpu10I	CCTNAGC	1 cut(s)	2919
Bpu14I	TTCGAA	1 cut(s)	4134
BpuEI	CTTGAG	5 cut(s)	1899, 2358, 3610, 4825, 5099
BpuMI	CCSGG	5 cut(s)	199, 220, 441, 796, 797
Bsa29I	ATCGAT	1 cut(s)	2019
BsaAI	YACGTR	3 cut(s)	3080, 5201, 5376
BsaBI	GATNNNNATC	1 cut(s)	2419
BsaHI	GRCGYC	3 cut(s)	1013, 1998, 2155
BsaI	GGTCTC	2 cut(s)	1271, 3603
BsaJI	CCNNGG	8 cut(s)	795, 1176, 1600, 2150, 2999, 3105, 3675, 4553
BsaWI	WCCGGW	1 cut(s)	1588
BsaXI	ACNNNNNCTCC	4 cut(s)	628, 658, 4698, 4728
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 2648, 3466
Bse118I	RCCGGY	1 cut(s)	3070
Bse3DI	GCAATG	5 cut(s)	1374, 3188, 4169, 4852, 5496
Bse8I	GATNNNNATC	1 cut(s)	2419
BseBI	CCWGG	9 cut(s)	385, 1620, 3000, 3106, 3549, 3676, 3810, 3967, 5243
BseCI	ATCGAT	1 cut(s)	2019
BseDI	CCNNGG	8 cut(s)	795, 1176, 1600, 2150, 2999, 3105, 3675, 4553
BseJI	GATNNNNATC	1 cut(s)	2419
BseLI	CCNNNNNNNGG	3 cut(s)	446, 2648, 3466
BseMI	GCAATG	5 cut(s)	1374, 3188, 4169, 4852, 5496
BseRI	GAGGAG	6 cut(s)	25, 75, 1275, 1617, 3881, 4318
BseSI	GKGCMC	3 cut(s)	1994, 3052, 4831
BseYI	CCCAGC	1 cut(s)	1105
BshFI	GGCC	8 cut(s)	1162, 1799, 1966, 2433, 2924, 3183, 3306, 3552
BshNI	GGYRCC	3 cut(s)	1997, 3030, 3802
BshVI	ATCGAT	1 cut(s)	2019
BsiHKAI	GWGCWC	6 cut(s)	1768, 1994, 2687, 3052, 3348, 4831
BsiHKCI	CYCGRG	3 cut(s)	110, 795, 4969
BsiSI	CCGG	8 cut(s)	138, 198, 219, 441, 796, 1589, 2430, 3071
BslFI	GGGAC	4 cut(s)	2058, 3123, 4700, 5393
BslI	CCNNNNNNNGG	3 cut(s)	446, 2648, 3466
BsmBI	CGTCTC	4 cut(s)	1020, 1162, 1521, 3586
BsmFI	GGGAC	4 cut(s)	2058, 3123, 4700, 5393
BsmI	GAATGC	5 cut(s)	204, 1075, 3236, 3877, 5440
BsnI	GGCC	8 cut(s)	1162, 1799, 1966, 2433, 2924, 3183, 3306, 3552
Bso31I	GGTCTC	2 cut(s)	1271, 3603
BsoBI	CYCGRG	3 cut(s)	110, 795, 4969
Bsp119I	TTCGAA	1 cut(s)	4134
Bsp1286I	GDGCHC	7 cut(s)	1768, 1994, 2687, 3052, 3348, 4419, 4831
Bsp1407I	TGTACA	1 cut(s)	1694
Bsp19I	CCATGG	1 cut(s)	4553
BspANI	GGCC	8 cut(s)	1162, 1799, 1966, 2433, 2924, 3183, 3306, 3552
BspDI	ATCGAT	1 cut(s)	2019
BspHI	TCATGA	3 cut(s)	1509, 4489, 5361
BspLI	GGNNCC	8 cut(s)	151, 1182, 1440, 1617, 1999, 3032, 3804, 4505
BspMAI	CTGCAG	1 cut(s)	4126
BspMI	ACCTGC	4 cut(s)	3434, 3532, 3717, 4045
BspOI	GCTAGC	1 cut(s)	1931
BspQI	GCTCTTC	1 cut(s)	1872
BspT104I	TTCGAA	1 cut(s)	4134
BspT107I	GGYRCC	3 cut(s)	1997, 3030, 3802
BspTI	CTTAAG	1 cut(s)	4669
BspTNI	GGTCTC	2 cut(s)	1271, 3603
BsrBI	CCGCTC	2 cut(s)	95, 5329
BsrDI	GCAATG	5 cut(s)	1374, 3188, 4169, 4852, 5496
BsrFI	RCCGGY	1 cut(s)	3070
BsrGI	TGTACA	1 cut(s)	1694
BssAI	RCCGGY	1 cut(s)	3070
BssECI	CCNNGG	8 cut(s)	795, 1176, 1600, 2150, 2999, 3105, 3675, 4553
BssNI	GRCGYC	3 cut(s)	1013, 1998, 2155
BssSI	CACGAG	1 cut(s)	2660
BssT1I	CCWWGG	2 cut(s)	2150, 4553
Bst2BI	CACGAG	1 cut(s)	2660
Bst2UI	CCWGG	9 cut(s)	385, 1620, 3000, 3106, 3549, 3676, 3810, 3967, 5243
Bst6I	CTCTTC	7 cut(s)	61, 67, 227, 894, 1872, 3399, 5228
BstACI	GRCGYC	3 cut(s)	1013, 1998, 2155
BstAFI	CTTAAG	1 cut(s)	4669
BstAPI	GCANNNNNTGC	3 cut(s)	2237, 2585, 2594
BstAUI	TGTACA	1 cut(s)	1694
BstBAI	YACGTR	3 cut(s)	3080, 5201, 5376
BstBI	TTCGAA	1 cut(s)	4134
BstC8I	GCNNGC	9 cut(s)	120, 878, 1569, 1929, 2916, 3072, 3632, 3749, 4415
BstDSI	CCRYGG	1 cut(s)	4553
BstEII	GGTNACC	2 cut(s)	193, 4155
BstH2I	RGCGCY	3 cut(s)	27, 1478, 2001
BstHHI	GCGC	6 cut(s)	26, 1477, 1719, 1980, 2000, 3845
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 35, 1395, 1568, 2237, 2585, 2594, 4019, 4974
BstNI	CCWGG	9 cut(s)	385, 1620, 3000, 3106, 3549, 3676, 3810, 3967, 5243
BstNSI	RCATGY	4 cut(s)	1402, 2190, 2219, 3935
BstPI	GGTNACC	2 cut(s)	193, 4155
BstSFI	CTRYAG	4 cut(s)	2355, 3681, 4122, 5151
BstSLI	GKGCMC	3 cut(s)	1994, 3052, 4831
BstSNI	TACGTA	1 cut(s)	5201
BstV2I	GAAGAC	3 cut(s)	219, 1539, 5520
BstX2I	RGATCY	7 cut(s)	361, 1180, 1615, 3416, 4231, 4607, 4648
BstXI	CCANNNNNNTGG	2 cut(s)	524, 4867
BstYI	RGATCY	7 cut(s)	361, 1180, 1615, 3416, 4231, 4607, 4648
Bsu15I	ATCGAT	1 cut(s)	2019
BsuI	GTATCC	3 cut(s)	1287, 1585, 2770
BsuRI	GGCC	8 cut(s)	1162, 1799, 1966, 2433, 2924, 3183, 3306, 3552
BsuTUI	ATCGAT	1 cut(s)	2019
BtgI	CCRYGG	1 cut(s)	4553
BtgZI	GCGATG	1 cut(s)	857
BtsI	GCAGTG	3 cut(s)	511, 589, 2238
BveI	ACCTGC	4 cut(s)	3434, 3532, 3717, 4045
Cac8I	GCNNGC	9 cut(s)	120, 878, 1569, 1929, 2916, 3072, 3632, 3749, 4415
CaiI	CAGNNNCTG	2 cut(s)	866, 3101
CciI	TCATGA	3 cut(s)	1509, 4489, 5361
CfoI	GCGC	6 cut(s)	26, 1477, 1719, 1980, 2000, 3845
Cfr10I	RCCGGY	1 cut(s)	3070
Cfr13I	GGNCC	3 cut(s)	1173, 2923, 5426
Cfr9I	CCCGGG	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	2019
CpoI	CGGWCCG	1 cut(s)	1173
CseI	GACGC	2 cut(s)	2144, 5268
CspCI	CAANNNNNGTGG	2 cut(s)	5357, 5392
CspI	CGGWCCG	1 cut(s)	1173
DinI	GGCGCC	1 cut(s)	1999
DraI	TTTAAA	4 cut(s)	975, 1155, 4945, 5086
DraIII	CACNNNGTG	2 cut(s)	201, 3466
EaeI	YGGCCR	4 cut(s)	2431, 3181, 3304, 3550
Eam1104I	CTCTTC	7 cut(s)	61, 67, 227, 894, 1872, 3399, 5228
EarI	CTCTTC	7 cut(s)	61, 67, 227, 894, 1872, 3399, 5228
EciI	GGCGGA	2 cut(s)	72, 3057
Ecl136II	GAGCTC	2 cut(s)	2685, 3346
Eco105I	TACGTA	1 cut(s)	5201
Eco130I	CCWWGG	2 cut(s)	2150, 4553
Eco147I	AGGCCT	1 cut(s)	1162
Eco24I	GRGCYC	3 cut(s)	2687, 3348, 4419
Eco31I	GGTCTC	2 cut(s)	1271, 3603
Eco32I	GATATC	4 cut(s)	509, 2026, 2861, 3381
Eco47I	GGWCC	2 cut(s)	1173, 5426
Eco47III	AGCGCT	1 cut(s)	1476
Eco53kI	GAGCTC	2 cut(s)	2685, 3346
Eco57I	CTGAAG	6 cut(s)	708, 2222, 3011, 3226, 3270, 4632
Eco88I	CYCGRG	3 cut(s)	110, 795, 4969
Eco91I	GGTNACC	2 cut(s)	193, 4155
EcoICRI	GAGCTC	2 cut(s)	2685, 3346
EcoO65I	GGTNACC	2 cut(s)	193, 4155
EcoRI	GAATTC	2 cut(s)	388, 3296
EcoRII	CCWGG	9 cut(s)	383, 1618, 2998, 3104, 3547, 3674, 3808, 3965, 5241
EcoRV	GATATC	4 cut(s)	509, 2026, 2861, 3381
EcoT14I	CCWWGG	2 cut(s)	2150, 4553
EcoT22I	ATGCAT	3 cut(s)	2500, 3879, 4015
EcoT38I	GRGCYC	3 cut(s)	2687, 3348, 4419
EgeI	GGCGCC	1 cut(s)	1999
EheI	GGCGCC	1 cut(s)	1999
ErhI	CCWWGG	2 cut(s)	2150, 4553
Esp3I	CGTCTC	4 cut(s)	1020, 1162, 1521, 3586
FaqI	GGGAC	4 cut(s)	2058, 3123, 4700, 5393
FauI	CCCGC	1 cut(s)	2045
FauNDI	CATATG	1 cut(s)	1909
FbaI	TGATCA	6 cut(s)	3, 769, 2698, 3979, 4486, 5518
FblI	GTMKAC	3 cut(s)	1135, 3567, 5319
FriOI	GRGCYC	3 cut(s)	2687, 3348, 4419
GlaI	GCGC	6 cut(s)	25, 1476, 1718, 1979, 1999, 3844
GsaI	CCCAGC	1 cut(s)	1109
GsuI	CTGGAG	5 cut(s)	444, 843, 2642, 4227, 4725
HaeII	RGCGCY	3 cut(s)	27, 1478, 2001
HaeIII	GGCC	8 cut(s)	1162, 1799, 1966, 2433, 2924, 3183, 3306, 3552
HapII	CCGG	8 cut(s)	138, 198, 219, 441, 796, 1589, 2430, 3071
HgaI	GACGC	2 cut(s)	2144, 5268
HhaI	GCGC	6 cut(s)	26, 1477, 1719, 1980, 2000, 3845
Hin1I	GRCGYC	3 cut(s)	1013, 1998, 2155
Hin6I	GCGC	6 cut(s)	24, 1475, 1717, 1978, 1998, 3843
HinP1I	GCGC	6 cut(s)	24, 1475, 1717, 1978, 1998, 3843
HincII	GTYRAC	3 cut(s)	1136, 2657, 4182
HindII	GTYRAC	3 cut(s)	1136, 2657, 4182
HindIII	AAGCTT	1 cut(s)	3919
HpaII	CCGG	8 cut(s)	138, 198, 219, 441, 796, 1589, 2430, 3071
HphI	GGTGA	9 cut(s)	187, 572, 1511, 1634, 4086, 4484, 4542, 5077, 5413
HpyCH4IV	ACGT	9 cut(s)	1013, 1811, 3079, 3570, 3859, 4296, 5134, 5200, 5375
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 35, 1395, 1568, 2237, 2585, 2594, 4019, 4974
HpySE526I	ACGT	9 cut(s)	1013, 1811, 3079, 3570, 3859, 4296, 5134, 5200, 5375
Hsp92I	GRCGYC	3 cut(s)	1013, 1998, 2155
HspAI	GCGC	6 cut(s)	24, 1475, 1717, 1978, 1998, 3843
KasI	GGCGCC	1 cut(s)	1997
KroI	GCCGGC	1 cut(s)	3070
KroNI	GCCGGC	1 cut(s)	3072
Ksp22I	TGATCA	6 cut(s)	3, 769, 2698, 3979, 4486, 5518
LguI	GCTCTTC	1 cut(s)	1872
LmnI	GCTCC	9 cut(s)	12, 189, 1763, 2810, 3225, 3469, 3577, 4503, 4543
MaeII	ACGT	9 cut(s)	1013, 1811, 3079, 3570, 3859, 4296, 5134, 5200, 5375
MbiI	CCGCTC	2 cut(s)	95, 5329
MflI	RGATCY	7 cut(s)	361, 1180, 1615, 3416, 4231, 4607, 4648
MhlI	GDGCHC	7 cut(s)	1768, 1994, 2687, 3052, 3348, 4419, 4831
MlsI	TGGCCA	3 cut(s)	3183, 3306, 3552
MluNI	TGGCCA	3 cut(s)	3183, 3306, 3552
Mly113I	GGCGCC	1 cut(s)	1998
MlyI	GAGTC	8 cut(s)	209, 1105, 2099, 2662, 4038, 4362, 4700, 4748
MmeI	TCCRAC	7 cut(s)	574, 2046, 2470, 4057, 4890, 5154, 5169
Mox20I	TGGCCA	3 cut(s)	3183, 3306, 3552
Mph1103I	ATGCAT	3 cut(s)	2500, 3879, 4015
MroNI	GCCGGC	1 cut(s)	3070
MroXI	GAANNNNTTC	5 cut(s)	1866, 2058, 3958, 4917, 5078
MscI	TGGCCA	3 cut(s)	3183, 3306, 3552
MslI	CAYNNNNRTG	2 cut(s)	2969, 3057
Msp20I	TGGCCA	3 cut(s)	3183, 3306, 3552
MspA1I	CMGCKG	2 cut(s)	2918, 4812
MspCI	CTTAAG	1 cut(s)	4669
MspI	CCGG	8 cut(s)	138, 198, 219, 441, 796, 1589, 2430, 3071
Mva1269I	GAATGC	5 cut(s)	204, 1075, 3236, 3877, 5440
MvaI	CCWGG	9 cut(s)	385, 1620, 3000, 3106, 3549, 3676, 3810, 3967, 5243
MwoI	GCNNNNNNNGC	9 cut(s)	21, 35, 1395, 1568, 2237, 2585, 2594, 4019, 4974
NaeI	GCCGGC	1 cut(s)	3072
NarI	GGCGCC	1 cut(s)	1998
NciI	CCSGG	5 cut(s)	199, 220, 441, 796, 797
NcoI	CCATGG	1 cut(s)	4553
NdeI	CATATG	1 cut(s)	1909
NgoMIV	GCCGGC	1 cut(s)	3070
NheI	GCTAGC	1 cut(s)	1927
NlaIV	GGNNCC	8 cut(s)	151, 1182, 1440, 1617, 1999, 3032, 3804, 4505
NmeAIII	GCCGAG	1 cut(s)	1625
NmuCI	GTSAC	4 cut(s)	193, 4092, 4726, 5014
NsiI	ATGCAT	3 cut(s)	2500, 3879, 4015
NspI	RCATGY	4 cut(s)	1402, 2190, 2219, 3935
NspV	TTCGAA	1 cut(s)	4134
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	3 cut(s)	1509, 4489, 5361
PaqCI	CACCTGC	1 cut(s)	3434
PceI	AGGCCT	1 cut(s)	1162
PciI	ACATGT	1 cut(s)	2215
PciSI	GCTCTTC	1 cut(s)	1872
PctI	GAATGC	5 cut(s)	204, 1075, 3236, 3877, 5440
PdiI	GCCGGC	1 cut(s)	3072
PdmI	GAANNNNTTC	5 cut(s)	1866, 2058, 3958, 4917, 5078
PflMI	CCANNNNNTGG	1 cut(s)	3466
PfoI	TCCNGGA	3 cut(s)	218, 383, 3808
PleI	GAGTC	8 cut(s)	209, 1105, 2098, 2661, 4037, 4361, 4699, 4748
PluTI	GGCGCC	1 cut(s)	2001
PpsI	GAGTC	8 cut(s)	209, 1105, 2098, 2661, 4037, 4361, 4699, 4748
Ppu21I	YACGTR	3 cut(s)	3080, 5201, 5376
PscI	ACATGT	1 cut(s)	2215
PshBI	ATTAAT	1 cut(s)	2967
Psp124BI	GAGCTC	2 cut(s)	2687, 3348
Psp1406I	AACGTT	1 cut(s)	3859
Psp6I	CCWGG	9 cut(s)	383, 1618, 2998, 3104, 3547, 3674, 3808, 3965, 5241
PspEI	GGTNACC	2 cut(s)	193, 4155
PspFI	CCCAGC	1 cut(s)	1105
PspGI	CCWGG	9 cut(s)	383, 1618, 2998, 3104, 3547, 3674, 3808, 3965, 5241
PspN4I	GGNNCC	8 cut(s)	151, 1182, 1440, 1617, 1999, 3032, 3804, 4505
PspPI	GGNCC	3 cut(s)	1173, 2923, 5426
PstI	CTGCAG	1 cut(s)	4126
PstNI	CAGNNNCTG	2 cut(s)	866, 3101
PsuI	RGATCY	7 cut(s)	361, 1180, 1615, 3416, 4231, 4607, 4648
PvuII	CAGCTG	1 cut(s)	2918
RseI	CAYNNNNRTG	2 cut(s)	2969, 3057
Rsr2I	CGGWCCG	1 cut(s)	1173
RsrII	CGGWCCG	1 cut(s)	1173
SacI	GAGCTC	2 cut(s)	2687, 3348
SalI	GTCGAC	1 cut(s)	1134
SapI	GCTCTTC	1 cut(s)	1872
Sau96I	GGNCC	3 cut(s)	1173, 2923, 5426
ScaI	AGTACT	2 cut(s)	2723, 3724
SchI	GAGTC	8 cut(s)	209, 1105, 2099, 2662, 4038, 4362, 4700, 4748
SduI	GDGCHC	7 cut(s)	1768, 1994, 2687, 3052, 3348, 4419, 4831
SfcI	CTRYAG	4 cut(s)	2355, 3681, 4122, 5151
SfoI	GGCGCC	1 cut(s)	1999
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	4134
SinI	GGWCC	2 cut(s)	1173, 5426
SlaI	CTCGAG	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	797
SmiI	ATTTAAAT	1 cut(s)	975
SmiMI	CAYNNNNRTG	2 cut(s)	2969, 3057
SmlI	CTYRAG	7 cut(s)	110, 1914, 2373, 3589, 4669, 4804, 5114
SmoI	CTYRAG	7 cut(s)	110, 1914, 2373, 3589, 4669, 4804, 5114
SnaBI	TACGTA	1 cut(s)	5201
SseBI	AGGCCT	1 cut(s)	1162
SspDI	GGCGCC	1 cut(s)	1997
SspI	AATATT	2 cut(s)	947, 4949
SstI	GAGCTC	2 cut(s)	2687, 3348
StuI	AGGCCT	1 cut(s)	1162
StyI	CCWWGG	2 cut(s)	2150, 4553
SwaI	ATTTAAAT	1 cut(s)	975
TaiI	ACGT	9 cut(s)	1016, 1814, 3082, 3573, 3862, 4299, 5137, 5203, 5378
TaqI	TCGA	7 cut(s)	111, 1135, 2019, 2339, 2899, 4134, 5128
TaqII	GACCGA	2 cut(s)	181, 1190
TatI	WGTACW	5 cut(s)	1081, 1694, 1731, 2721, 3722
TauI	GCSGC	6 cut(s)	21, 24, 54, 57, 98, 4812
TseFI	GTSAC	4 cut(s)	193, 4092, 4726, 5014
Tsp45I	GTSAC	4 cut(s)	193, 4092, 4726, 5014
TspGWI	ACGGA	4 cut(s)	1186, 3197, 3231, 4263
TspMI	CCCGGG	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	3466
Vha464I	CTTAAG	1 cut(s)	4669
VneI	GTGCAC	3 cut(s)	1990, 3048, 4827
VpaK11BI	GGWCC	2 cut(s)	1173, 5426
VspI	ATTAAT	1 cut(s)	2967
XbaI	TCTAGA	1 cut(s)	1046
XceI	RCATGY	4 cut(s)	1402, 2190, 2219, 3935
XhoI	CTCGAG	1 cut(s)	110
XmaI	CCCGGG	1 cut(s)	795
XmiI	GTMKAC	3 cut(s)	1135, 3567, 5319
XmnI	GAANNNNTTC	5 cut(s)	1866, 2058, 3958, 4917, 5078
ZraI	GACGTC	1 cut(s)	1014
ZrmI	AGTACT	2 cut(s)	2723, 3724
Zsp2I	ATGCAT	3 cut(s)	2500, 3879, 4015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.