Rroxscaffold_5G00382080
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
61939980 .. 61947725
7746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382080.1

Sequence Viewer

Length: 5502 bp
ATGATCAAGAAGAGCTGCGACGGCGCTGCTGTGGTTGCTGGTAGTGAAAGCGGCGGAGGAGGAAGAAGGAGTGAGAGAGCGGCAAATGTGTTTCTCGAGATGCGAGCTGATGATTTTGATTCCGGCAGAAAAGGAACCTTCTCCACCCGTAGAGATCGCTGTGATATGCTCCAATCGGTCACCGGGTGCATTCTTGAAGACTCTGGGATTGGACAGAAGAAAATAAAGAATTTAGATTCGAGGAAGCTGGAAAAAGGAGGTAGAGCTGCTTCTAATTCTTGTTGGTGGATTGTTACAATTCTATGGGAATATCTTTCTATGGGAATACCTGATCGTTCCCTATCAGATCTAATAGAGAAAGTGAGGTCCTGGAATTCTAGGGGAACAAGTGAGTTAAGGTCTTTGTCTGGAGAGTTGGATATTCTCCCCGGTAACGGTAACGGTAACGGTAACGGTTGCAAGATGTGTTGTGATTGCCAGACAGACACCAGTGGAGTTGGTCATAGACATCACTGCCAAAGCTGTGGGCGGTGGATTTGTGGCAAGTGTATTCAGGGTGGTGAATGGGATGGTTTGACGAGCAGTGATGAGGTTGGAGAGAAGTTGTGCAAGTTTTGTTCTGAGGTTAGATTAAGGAGGGAAGGTGGGGGAAAGTGTAGTGAGAAAGTGCATCCTTCTGCCTCTCCTGAAGAAAGCCCTGAACCACCATCCCCGTGTTTTAGCAGCGAAACTATCAGGTGTTGTGCGGATGATGAATCCACTCGGACTGATCATCTGTCAAAGTATCTTGAAGCCCGGGATATTGGCTATTCTCCCCGTGCTGCCAAGAGCATGACTTCATTTAGTTCTTACCCATCTCCAGTAGCTGTTCATCGCTCTCATAGTAGGAGTGATGAAGAAGAGGCAGAAGATTCGGCAAAGAACTTTTGCAGCCCTTCAAGTGAATATTGTGATGACAATTTGGATATAGATTTAAATAGTGTTAGTGCTAGAAGTGAGTTATACAGTTTGAGGTCTCTGGGATCAAGTCAGTTTGATTGCTCATCTAGAATTTACTATACTTCTAGTAAAGGGCATTCAGTACAGCAGAGGCATGAAGGCATCCCAGCGACTCAGAGTGATGAACCCTTTGGTCGACAGGCTAAGGCTGTTTTAAAAAGGCCTGAGAGACGGACCGAGGATCCAGATATTACTGATGACTGCTCTGATGACTTGTCAGCGTTCCGCAGCCAATATGAGAAACCATTGGATTTTGAAAATAATGGTCTCATCTGGTATCCACCTCCTCCTGATGATGAGAATGATGAGGCAGAAAGTAATTTCTTTTCCTATGATGATGAAGATGATGATATTGGAGATTCAGGTGCAATGTTTTCTTCCAGTAGTAGCCTTTCAAGCATGTTTCCTGCAAAGGATAAACAGAATGAGGGTAACAAGGAACCTCTTAGAGCTGTGGTTCAGGGGCATTTTAGAGCGCTTGTATCACAACTCTTACAAGGTGAGGGTTTCATGAGCAAAGAGGATGGAGATGAAGACTGGCTTGACATAGTAACAACAATAGCATGGCAAGCTGCAAATTTTGTTAAACCGGATACTAGCCGAGGAGGTAGTATGGATCCTGGTGATTATGTGAAAGTTAAATGTATTCCATCAGGAAGTCCAAGCGACAGCACCCTTGTAAAAGGAGTAGTTTGCACAAAGAATATAAAGCACAAGCGCATGACTTCACAGTACAAAAATCCTAGATTACTTATTTTAGGGGGAGCACTTGAATATCAGAAAGTTCCAAACCAGTTGGCCTCTTTTGACACGTTACTGCATCAGGAAAACGATCATCTTAGAACGATTATCTCAAAGATAGAAGCTCTTCGTCCAAATGTTCTGCTGGTAGAGAAAAGCGTATCTTCATATGCTCAAGACCATCTGCTAGCAAAGGAAATATCATTAGTTCTGAATGTTAAAAGGCCAGTACTAGAGCGCATAGCTCGGTGCACTGGCGCCCTTATTACTCCATCAATCGATGATATCCCTAAAACCCGCTTGGGACATTGTGAATTGTTTCGGTTGGAAAAAATTTCTGAACAGCATGAGTCAGCTAATCAGTTCAACAAGAAACCAGTGAAAACCTTGATGTTTTTTGAAGGGTGTCCAAGGCGTCTTTGTTGCACGGTCCTGCTGAAAGGTGCATGTGTTGAACAACTGAAGAAGATCAAACATGTCGTTCAGTATGCAGTGTTTGCAGCTTATCATTTATCCCTAGAAACATCATTCCTTGTTGATGAGGGTGCTACTCTGCCCAAGATACCTAGACAGTCAATTTCAGCTAATTCTCTTACTTCGAGCAATTCCAAAGCTGTAGCTGATGCTTCTGCTCAAGATGATGATATTTTGGGTTTGATCCCAGAAATTGAAGGATCAGAATCTTTGTCCGGCCATCTTGTTCCTGACCATAGTTTTCCTTTATCTAATGGTTCTGTGGACTTTGAGGTTGGAAATGCATTTTCTGATCCCTATAATGATGATTTAGCATCTCATGTATTTTCGGACACTTCTTCACATCAATACAAGGACATAAAGGCACTGATTGCACATTCTGCTGAGACAAAAAACATTTCCCGACTGGAGTTGCAAGAAACCTTGCCTCATGTCGGGAGTCAACACGAGGATATTCATGAATTGACAAGCTCTGTGAGGATTGATCAGAATGAGCCTTCCAGTGAGTACTTCTCTACTGCTGACACTCATCAGAGCATTTTAGTATCCTTTTCAAGCCATTGTGTTCTGAAAGGAACTGTTTGTGAACGCTCCCGACTTCTGCGAATAAAGTTCTATGGCTGCTTTGATAAGCCACTTGGAAGATATCTTCGTGATGACCTATTTGATCGGACATCTTTCTGTCGATCTTGTAAAGAGCCAGCTGAGGCCCATGTTGTATGTTACACCCATCAACAAGGAAACCTTACCATTAATGTGAGACGCTTTCCTTCACTGAAGCTACCTGGGGAAAGAGATGGTAAAATATGGATGTGGCACCGTTGTCTGAGGTGTGCACATATAGATGGAGTTCCGCCGGCAACACGTAGAGTAGTCATGTCAGATGCTGCCTGGGGACTTTCTTTTGGAAAGTTCTTGGAACTTAGCTTTTCAAACCATGCAACTGCTAATCGCGTAGCTACTTGTGGCCATTCATTGCAACGAGACTGTCTCCGTTACTACGGATTTGGGAGCATGGTGGCATTCTTCAGATATTCCCCCATTGATATTCTTTCTGTCCATTTGCCTCCTTCAGTCCTTGAATTCAATGGTCAAGTTCAACCAGATTGGATAAGAAAAGAGGCAACAGAGCTCATGGGAAAGATGGAAACCTTATATGCAGAGATATCTGATATTCTTGACTGCATGGAAGAGAAAAATAGATCTTTTGGATGTGAAATGTCAGGGGCTGATGGATTACAGAACCACATCATGTTTCCTGGGAAGCTTAAGCGAAGGAAGGGTTTTCTGCAACCTGCTTTTGTGGATACATCTGAACCGGGCCAAATGGCTGTTGTAGACGTTTTGGAGCTAAATCGCTTGAGACGGTCTCTTTTAATTGGTTCTCATGTTTGGGATCGCCAGCTTTATTCATTGGATTCACTTATTCAGAAGAATCCAGTTTCCAGGGCTACAGATGGGGTTGTATCTGTTGGCTACCTGCAAGAGTTGAGTACTGATCCATCTAGTAAGGATGGCAGGCTTGATTTTGCCCATGAAGGTAATAATGTGTCTGAATGTCCAAAATTTCTGGTGCCTCCTGGAAATGATTTGCTGCCAGACAAAGAACCTAGCGCACCAATGTTCGAACGTTCTGAGGAGGATATGCATTCAGATGGGGAAATTGTTGTTGATGAGACATCCTATGAAAGCTTCCCCTCGCATGTTTCTACTCTTTCTGAGAGAATAGATTCTGCATGGACTGGAACTGATCAACTTCTGGCGAAAGCTCAACCACTTCATGCATCACACGCAGATGGAGTCCAACCTGCTGCTGTTAGGCTGATGAGCCAAAATGATGATCCTCCTTTTAGAAGGTTAGTGTCACCAATGAGAGTTCACTCTTTTGATTCTGCAGTAAGATTCCAAGAAAGGATTAGGAAAGGGTTGCCGCCTTCTTCGTTGCATTTGTCAACACTAAGATCATTTCATGCTTCTGGAGATTACAGGACTATGGTTAGAGATCCTCTTTCTAGTGTAACAAGGCCATTAGAGGCTCAGAAATTAAACGTAATACTAAGTTCCACACCCTCATTTATCTCCTCTGCATCTCAAATAGCTGATGGAGTCAGGTTGCTGCTCTCTCAGACAACCAACAATAATGTAGTTGTTGGTGTTTATGACAGCGAGCCCACAAGCATAATTTCGTATGCCCTTAGTTCTAAGGATTACGAGGACTGGGTTGGTGATAAGTTGAATGAGCATGAGGGGGCATGGAGCATCCATGAAAGCTACAAAGAAGATTCAGCAGCTCCCACCTTTTCACCATGGCAATCTTTTGGTTCTATGGACTTGGATTATATCCACTATGGAAGTTATGGATCTGAAGATGGTTCATCCTCTATGAGTAACTTGTTTGCAGATCCCAAGAAATCTCCACACTTACGGATTTCCTTTGGGGACGAGTCCTCAAATGCTGGAGGCAAAGTGAAGTTTTCTGTGACTTGTTATTTTGCAAAGCATTTTGACTCTCTTAGGAAGATATGCTGCCCTAATGAAGTGGATTTTGTACGATCCTTGAGCCGCTGCCAGAGATGGAGTGCACAAGGGGGAAAAAGCAATGTATATTTTGCCAAATCATTGGATGATAGATTTATCATAAAGCAAGTTACAAAGACAGAGTTGGAATCCTTTCAGGAATTTGCACCTGAGTATTTTAAATATTTGACAGATTCTCTTAGCTCTGGAAGCCCAACTTGTCTTGCAAAAATTCTTGGTATATATCAGGTCACTGTCAAACACCTAAAAGGTGGGAAGGAAACTAAAATGGATTTGATGGTGATGGAGAACCTTTTCTTTAAAAGAAATATATCAAGGGTATATGATCTCAAGGGGTCTGCTCGATCACGTTACAATTCTGATACTACAGGCACAAACAAAGTACTGTTGGACATGAATTTGTTGGAATCATTACGTACAAAACCCATATTTCTTGGAAGCAAAGCAAAGAGAAGCCTGGAAAGATCAATTTGGAATGATACATCCTTTTTAGCGTCTGTTGATGTGATGGACTACTCGCTGCTGGTTGGGGTAGACGATGAGCGGAAGGAACTGGTTTTGGGGATAATTGATTTCATGAGACAATATACGTGGGACAAGCATTTGGAGACATGGGTGAAGGCATCTGGAATACTTGGTGGTCCGAAGAATGCTTCCCCGACAATCATTTCTCCCAAGCAATACAAGAAAAGATTCCGGAAGGCAATGACTACCTATTTTCTCACTGTACCTGATCAATGGTCTTCCTGA

Protein Analysis

1833

Amino Acids

204.28

Weight (kDa)

5.93

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 510 - 753 3.7e-31 TCP-1/cpn60 chaperonin family
PIP5K PF01504 1600 - 1767 7.1e-36 Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K PF01504 1764 - 1822 1.3e-07 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 3517, 3702, 4030
AccB1I GGYRCC 3 cut(s) 1997, 3030, 3787
AccBSI CCGCTC 2 cut(s) 80, 5296
AccI GTMKAC 3 cut(s) 1135, 3552, 5286
AccII CGCG 1 cut(s) 3168
AccIII TCCGGA 1 cut(s) 5448
AclI AACGTT 1 cut(s) 3844
AcoI YGGCCR 2 cut(s) 2431, 3181
AcuI CTGAAG 6 cut(s) 708, 2222, 3011, 3226, 3270, 4599
AcyI GRCGYC 2 cut(s) 1998, 2155
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 9 cut(s) 1083, 1733, 1971, 2723, 3709, 4764, 5136, 5170, 5481
AfeI AGCGCT 1 cut(s) 1476
AfiI CCNNNNNNNGG 2 cut(s) 434, 2648
AflII CTTAAG 1 cut(s) 3482
AflIII ACRYGT 3 cut(s) 1809, 2215, 3077
AjnI CCWGG 8 cut(s) 368, 1618, 2998, 3104, 3472, 3659, 3793, 5208
Alw21I GWGCWC 5 cut(s) 1768, 1994, 3052, 3348, 4798
Alw44I GTGCAC 3 cut(s) 1990, 3048, 4794
AlwNI CAGNNNCTG 3 cut(s) 866, 3101, 3443
Ama87I CYCGRG 2 cut(s) 95, 795
Aor13HI TCCGGA 1 cut(s) 5448
Aor51HI AGCGCT 1 cut(s) 1476
AoxI GGCC 8 cut(s) 1160, 1797, 1964, 2431, 2922, 3181, 3535, 4238
ApaLI GTGCAC 3 cut(s) 1990, 3048, 4794
AseI ATTAAT 1 cut(s) 2967
Asp700I GAANNNNTTC 6 cut(s) 1866, 2058, 3943, 4884, 5045, 5444
AspLEI GCGC 6 cut(s) 26, 1477, 1719, 1980, 2000, 3830
AspS9I GGNCC 6 cut(s) 366, 1173, 2170, 2923, 3535, 5393
AsuC2I CCSGG 5 cut(s) 184, 429, 796, 797, 3534
AsuHPI GGTGA 9 cut(s) 172, 572, 1511, 1634, 4071, 4451, 4509, 5044, 5380
AsuII TTCGAA 1 cut(s) 3840
AsuNHI GCTAGC 1 cut(s) 1927
AvaI CYCGRG 2 cut(s) 95, 795
AvaII GGWCC 4 cut(s) 366, 1173, 2170, 5393
BaeGI GKGCMC 3 cut(s) 1994, 3052, 4798
BalI TGGCCA 1 cut(s) 3183
BamHI GGATCC 2 cut(s) 1180, 1615
BanI GGYRCC 3 cut(s) 1997, 3030, 3787
BanII GRGCYC 2 cut(s) 3348, 4386
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BauI CACGAG 1 cut(s) 2660
BbsI GAAGAC 3 cut(s) 204, 1539, 5487
Bbv12I GWGCWC 5 cut(s) 1768, 1994, 3052, 3348, 4798
BbvCI CCTCAGC 1 cut(s) 2919
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 894, 928
BciT130I CCWGG 8 cut(s) 370, 1620, 3000, 3106, 3474, 3661, 3795, 5210
BciVI GTATCC 4 cut(s) 1287, 1585, 2770, 3514
BclI TGATCA 5 cut(s) 3, 769, 2698, 3964, 5485
BcnI CCSGG 5 cut(s) 184, 429, 796, 797, 3534
BfmI CTRYAG 4 cut(s) 2355, 3666, 4107, 5118
BfoI RGCGCY 3 cut(s) 27, 1478, 2001
BfrI CTTAAG 1 cut(s) 3482
BfuAI ACCTGC 3 cut(s) 3517, 3702, 4030
BfuI GTATCC 4 cut(s) 1287, 1585, 2770, 3514
BglII AGATCT 2 cut(s) 346, 3416
BmcAI AGTACT 4 cut(s) 1971, 2723, 3709, 5136
Bme18I GGWCC 4 cut(s) 366, 1173, 2170, 5393
BmeT110I CYCGRG 2 cut(s) 95, 795
BmgT120I GGNCC 6 cut(s) 366, 1173, 2170, 2923, 3535, 5393
BmiI GGNNCC 7 cut(s) 136, 1182, 1440, 1617, 1999, 3032, 3789
BmrI ACTGGG 1 cut(s) 4441
BmtI GCTAGC 1 cut(s) 1931
BmuI ACTGGG 1 cut(s) 4441
BpiI GAAGAC 3 cut(s) 204, 1539, 5487
BplI GAGNNNNNCTC 6 cut(s) 2711, 2743, 3189, 3221, 3568, 3600
BpmI CTGGAG 5 cut(s) 429, 843, 2642, 4212, 4692
Bpu10I CCTNAGC 2 cut(s) 1143, 2919
Bpu14I TTCGAA 1 cut(s) 3840
BpuEI CTTGAG 5 cut(s) 1899, 2358, 3595, 4792, 5066
BpuMI CCSGG 5 cut(s) 184, 429, 796, 797, 3534
Bsa29I ATCGAT 1 cut(s) 2019
BsaAI YACGTR 3 cut(s) 3080, 5168, 5343
BsaBI GATNNNNATC 1 cut(s) 2419
BsaHI GRCGYC 2 cut(s) 1998, 2155
BsaI GGTCTC 3 cut(s) 1020, 1271, 3588
BsaWI WCCGGW 2 cut(s) 1588, 5448
BsaXI ACNNNNNCTCC 4 cut(s) 628, 658, 4665, 4695
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 2648
Bse118I RCCGGY 1 cut(s) 3070
Bse3DI GCAATG 4 cut(s) 1374, 3188, 4819, 5463
Bse8I GATNNNNATC 1 cut(s) 2419
BseAI TCCGGA 1 cut(s) 5448
BseBI CCWGG 8 cut(s) 370, 1620, 3000, 3106, 3474, 3661, 3795, 5210
BseCI ATCGAT 1 cut(s) 2019
BseJI GATNNNNATC 1 cut(s) 2419
BseLI CCNNNNNNNGG 2 cut(s) 434, 2648
BseMI GCAATG 4 cut(s) 1374, 3188, 4819, 5463
BseRI GAGGAG 5 cut(s) 72, 1275, 1617, 3866, 4285
BseSI GKGCMC 3 cut(s) 1994, 3052, 4798
BseYI CCCAGC 1 cut(s) 1105
Bsh1236I CGCG 1 cut(s) 3168
BshFI GGCC 8 cut(s) 1162, 1799, 1966, 2433, 2924, 3183, 3537, 4240
BshNI GGYRCC 3 cut(s) 1997, 3030, 3787
BshVI ATCGAT 1 cut(s) 2019
BsiHKAI GWGCWC 5 cut(s) 1768, 1994, 3052, 3348, 4798
BsiHKCI CYCGRG 2 cut(s) 95, 795
BsiSI CCGG 9 cut(s) 123, 183, 429, 796, 1589, 2430, 3071, 3533, 5449
BslFI GGGAC 4 cut(s) 2058, 3123, 4667, 5360
BslI CCNNNNNNNGG 2 cut(s) 434, 2648
BsmBI CGTCTC 3 cut(s) 1162, 2968, 3571
BsmFI GGGAC 4 cut(s) 2058, 3123, 4667, 5360
BsmI GAATGC 5 cut(s) 189, 1075, 3236, 3862, 5407
BsnI GGCC 8 cut(s) 1162, 1799, 1966, 2433, 2924, 3183, 3537, 4240
Bso31I GGTCTC 3 cut(s) 1020, 1271, 3588
BsoBI CYCGRG 2 cut(s) 95, 795
Bsp119I TTCGAA 1 cut(s) 3840
Bsp1286I GDGCHC 6 cut(s) 1768, 1994, 3052, 3348, 4386, 4798
Bsp13I TCCGGA 1 cut(s) 5448
Bsp19I CCATGG 1 cut(s) 4520
BspANI GGCC 8 cut(s) 1162, 1799, 1966, 2433, 2924, 3183, 3537, 4240
BspDI ATCGAT 1 cut(s) 2019
BspEI TCCGGA 1 cut(s) 5448
BspFNI CGCG 1 cut(s) 3168
BspHI TCATGA 3 cut(s) 1509, 2671, 5328
BspLI GGNNCC 7 cut(s) 136, 1182, 1440, 1617, 1999, 3032, 3789
BspMAI CTGCAG 1 cut(s) 4111
BspMI ACCTGC 3 cut(s) 3517, 3702, 4030
BspOI GCTAGC 1 cut(s) 1931
BspQI GCTCTTC 2 cut(s) 5, 1872
BspT104I TTCGAA 1 cut(s) 3840
BspT107I GGYRCC 3 cut(s) 1997, 3030, 3787
BspTI CTTAAG 1 cut(s) 3482
BspTNI GGTCTC 3 cut(s) 1020, 1271, 3588
BsrBI CCGCTC 2 cut(s) 80, 5296
BsrDI GCAATG 4 cut(s) 1374, 3188, 4819, 5463
BsrFI RCCGGY 1 cut(s) 3070
BssAI RCCGGY 1 cut(s) 3070
BssNI GRCGYC 2 cut(s) 1998, 2155
BssSI CACGAG 1 cut(s) 2660
BssT1I CCWWGG 2 cut(s) 2150, 4520
Bst2BI CACGAG 1 cut(s) 2660
Bst2UI CCWGG 8 cut(s) 370, 1620, 3000, 3106, 3474, 3661, 3795, 5210
Bst6I CTCTTC 4 cut(s) 5, 894, 1872, 3399
BstACI GRCGYC 2 cut(s) 1998, 2155
BstAFI CTTAAG 1 cut(s) 3482
BstAPI GCANNNNNTGC 3 cut(s) 2237, 2585, 2594
BstBAI YACGTR 3 cut(s) 3080, 5168, 5343
BstBI TTCGAA 1 cut(s) 3840
BstC8I GCNNGC 8 cut(s) 105, 1569, 1929, 2916, 3072, 3617, 3734, 4382
BstDSI CCRYGG 1 cut(s) 4520
BstEII GGTNACC 1 cut(s) 178
BstFNI CGCG 1 cut(s) 3168
BstH2I RGCGCY 3 cut(s) 27, 1478, 2001
BstHHI GCGC 6 cut(s) 26, 1477, 1719, 1980, 2000, 3830
BstMWI GCNNNNNNNGC 9 cut(s) 21, 35, 1395, 1568, 2237, 2585, 2594, 4004, 4941
BstNI CCWGG 8 cut(s) 370, 1620, 3000, 3106, 3474, 3661, 3795, 5210
BstNSI RCATGY 4 cut(s) 1402, 2190, 2219, 3920
BstPI GGTNACC 1 cut(s) 178
BstSFI CTRYAG 4 cut(s) 2355, 3666, 4107, 5118
BstSLI GKGCMC 3 cut(s) 1994, 3052, 4798
BstSNI TACGTA 1 cut(s) 5168
BstUI CGCG 1 cut(s) 3168
BstV2I GAAGAC 3 cut(s) 204, 1539, 5487
BstX2I RGATCY 7 cut(s) 346, 1180, 1615, 3416, 4216, 4574, 4615
BstXI CCANNNNNNTGG 2 cut(s) 524, 4834
BstYI RGATCY 7 cut(s) 346, 1180, 1615, 3416, 4216, 4574, 4615
Bsu15I ATCGAT 1 cut(s) 2019
BsuI GTATCC 4 cut(s) 1287, 1585, 2770, 3514
BsuRI GGCC 8 cut(s) 1162, 1799, 1966, 2433, 2924, 3183, 3537, 4240
BsuTUI ATCGAT 1 cut(s) 2019
BtgI CCRYGG 1 cut(s) 4520
BtgZI GCGATG 1 cut(s) 857
BtsI GCAGTG 3 cut(s) 511, 589, 2238
BveI ACCTGC 3 cut(s) 3517, 3702, 4030
Cac8I GCNNGC 8 cut(s) 105, 1569, 1929, 2916, 3072, 3617, 3734, 4382
CaiI CAGNNNCTG 3 cut(s) 866, 3101, 3443
CciI TCATGA 3 cut(s) 1509, 2671, 5328
CfoI GCGC 6 cut(s) 26, 1477, 1719, 1980, 2000, 3830
Cfr10I RCCGGY 1 cut(s) 3070
Cfr13I GGNCC 6 cut(s) 366, 1173, 2170, 2923, 3535, 5393
Cfr9I CCCGGG 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 2019
CpoI CGGWCCG 1 cut(s) 1173
CseI GACGC 3 cut(s) 2144, 2985, 5235
Csp6I GTAC 9 cut(s) 1082, 1732, 1970, 2722, 3708, 4763, 5135, 5169, 5480
CspCI CAANNNNNGTGG 2 cut(s) 5324, 5359
CspI CGGWCCG 1 cut(s) 1173
CviQI GTAC 9 cut(s) 1082, 1732, 1970, 2722, 3708, 4763, 5135, 5169, 5480
DinI GGCGCC 1 cut(s) 1999
DraI TTTAAA 4 cut(s) 975, 1155, 4912, 5053
DraIII CACNNNGTG 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 2431, 3181
Eam1104I CTCTTC 4 cut(s) 5, 894, 1872, 3399
EarI CTCTTC 4 cut(s) 5, 894, 1872, 3399
EciI GGCGGA 2 cut(s) 69, 3057
Ecl136II GAGCTC 1 cut(s) 3346
Eco105I TACGTA 1 cut(s) 5168
Eco130I CCWWGG 2 cut(s) 2150, 4520
Eco147I AGGCCT 1 cut(s) 1162
Eco24I GRGCYC 2 cut(s) 3348, 4386
Eco31I GGTCTC 3 cut(s) 1020, 1271, 3588
Eco32I GATATC 3 cut(s) 2026, 2861, 3381
Eco47I GGWCC 4 cut(s) 366, 1173, 2170, 5393
Eco47III AGCGCT 1 cut(s) 1476
Eco53kI GAGCTC 1 cut(s) 3346
Eco57I CTGAAG 6 cut(s) 708, 2222, 3011, 3226, 3270, 4599
Eco88I CYCGRG 2 cut(s) 95, 795
Eco91I GGTNACC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 3346
EcoO109I RGGNCCY 1 cut(s) 366
EcoO65I GGTNACC 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 373, 3296
EcoRII CCWGG 8 cut(s) 368, 1618, 2998, 3104, 3472, 3659, 3793, 5208
EcoRV GATATC 3 cut(s) 2026, 2861, 3381
EcoT14I CCWWGG 2 cut(s) 2150, 4520
EcoT22I ATGCAT 3 cut(s) 2500, 3864, 4000
EcoT38I GRGCYC 2 cut(s) 3348, 4386
EgeI GGCGCC 1 cut(s) 1999
EheI GGCGCC 1 cut(s) 1999
ErhI CCWWGG 2 cut(s) 2150, 4520
Esp3I CGTCTC 3 cut(s) 1162, 2968, 3571
FalI AAGNNNNNCTT 8 cut(s) 1524, 1556, 1888, 1920, 2943, 2975, 4933, 4965
FaqI GGGAC 4 cut(s) 2058, 3123, 4667, 5360
FauI CCCGC 1 cut(s) 2045
FauNDI CATATG 1 cut(s) 1909
FbaI TGATCA 5 cut(s) 3, 769, 2698, 3964, 5485
FblI GTMKAC 3 cut(s) 1135, 3552, 5286
FriOI GRGCYC 2 cut(s) 3348, 4386
GlaI GCGC 6 cut(s) 25, 1476, 1718, 1979, 1999, 3829
GsaI CCCAGC 1 cut(s) 1109
GsuI CTGGAG 5 cut(s) 429, 843, 2642, 4212, 4692
HaeII RGCGCY 3 cut(s) 27, 1478, 2001
HaeIII GGCC 8 cut(s) 1162, 1799, 1966, 2433, 2924, 3183, 3537, 4240
HapII CCGG 9 cut(s) 123, 183, 429, 796, 1589, 2430, 3071, 3533, 5449
HgaI GACGC 3 cut(s) 2144, 2985, 5235
HhaI GCGC 6 cut(s) 26, 1477, 1719, 1980, 2000, 3830
Hin1I GRCGYC 2 cut(s) 1998, 2155
Hin6I GCGC 6 cut(s) 24, 1475, 1717, 1978, 1998, 3828
HinP1I GCGC 6 cut(s) 24, 1475, 1717, 1978, 1998, 3828
HincII GTYRAC 3 cut(s) 1136, 2657, 4167
HindII GTYRAC 3 cut(s) 1136, 2657, 4167
HindIII AAGCTT 2 cut(s) 3479, 3904
HpaII CCGG 9 cut(s) 123, 183, 429, 796, 1589, 2430, 3071, 3533, 5449
HphI GGTGA 9 cut(s) 172, 572, 1511, 1634, 4071, 4451, 4509, 5044, 5380
Hpy99I CGWCG 1 cut(s) 23
HpyCH4IV ACGT 8 cut(s) 1811, 3079, 3555, 3844, 4263, 5101, 5167, 5342
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 35, 1395, 1568, 2237, 2585, 2594, 4004, 4941
HpySE526I ACGT 8 cut(s) 1811, 3079, 3555, 3844, 4263, 5101, 5167, 5342
Hsp92I GRCGYC 2 cut(s) 1998, 2155
HspAI GCGC 6 cut(s) 24, 1475, 1717, 1978, 1998, 3828
KasI GGCGCC 1 cut(s) 1997
Kpn2I TCCGGA 1 cut(s) 5448
KroI GCCGGC 1 cut(s) 3070
KroNI GCCGGC 1 cut(s) 3072
Ksp22I TGATCA 5 cut(s) 3, 769, 2698, 3964, 5485
LguI GCTCTTC 2 cut(s) 5, 1872
LmnI GCTCC 7 cut(s) 174, 1763, 2810, 3225, 3562, 4470, 4510
MaeII ACGT 8 cut(s) 1811, 3079, 3555, 3844, 4263, 5101, 5167, 5342
MbiI CCGCTC 2 cut(s) 80, 5296
MflI RGATCY 7 cut(s) 346, 1180, 1615, 3416, 4216, 4574, 4615
MhlI GDGCHC 6 cut(s) 1768, 1994, 3052, 3348, 4386, 4798
MlsI TGGCCA 1 cut(s) 3183
MluNI TGGCCA 1 cut(s) 3183
Mly113I GGCGCC 1 cut(s) 1998
MlyI GAGTC 8 cut(s) 194, 1105, 2099, 2662, 4023, 4329, 4667, 4715
MmeI TCCRAC 8 cut(s) 396, 574, 2046, 2470, 4042, 4857, 5121, 5136
Mox20I TGGCCA 1 cut(s) 3183
Mph1103I ATGCAT 3 cut(s) 2500, 3864, 4000
MroI TCCGGA 1 cut(s) 5448
MroNI GCCGGC 1 cut(s) 3070
MroXI GAANNNNTTC 6 cut(s) 1866, 2058, 3943, 4884, 5045, 5444
MscI TGGCCA 1 cut(s) 3183
MslI CAYNNNNRTG 5 cut(s) 712, 2969, 3057, 3867, 4008
Msp20I TGGCCA 1 cut(s) 3183
MspA1I CMGCKG 2 cut(s) 2918, 4779
MspCI CTTAAG 1 cut(s) 3482
MspI CCGG 9 cut(s) 123, 183, 429, 796, 1589, 2430, 3071, 3533, 5449
Mva1269I GAATGC 5 cut(s) 189, 1075, 3236, 3862, 5407
MvaI CCWGG 8 cut(s) 370, 1620, 3000, 3106, 3474, 3661, 3795, 5210
MvnI CGCG 1 cut(s) 3168
MwoI GCNNNNNNNGC 9 cut(s) 21, 35, 1395, 1568, 2237, 2585, 2594, 4004, 4941
NaeI GCCGGC 1 cut(s) 3072
NarI GGCGCC 1 cut(s) 1998
NciI CCSGG 5 cut(s) 184, 429, 796, 797, 3534
NcoI CCATGG 1 cut(s) 4520
NdeI CATATG 1 cut(s) 1909
NgoMIV GCCGGC 1 cut(s) 3070
NheI GCTAGC 1 cut(s) 1927
NlaIV GGNNCC 7 cut(s) 136, 1182, 1440, 1617, 1999, 3032, 3789
NmeAIII GCCGAG 1 cut(s) 1625
NmuCI GTSAC 4 cut(s) 178, 4077, 4693, 4981
NsiI ATGCAT 3 cut(s) 2500, 3864, 4000
NspI RCATGY 4 cut(s) 1402, 2190, 2219, 3920
NspV TTCGAA 1 cut(s) 3840
PaeR7I CTCGAG 1 cut(s) 95
PagI TCATGA 3 cut(s) 1509, 2671, 5328
PceI AGGCCT 1 cut(s) 1162
PciI ACATGT 1 cut(s) 2215
PciSI GCTCTTC 2 cut(s) 5, 1872
PctI GAATGC 5 cut(s) 189, 1075, 3236, 3862, 5407
PdiI GCCGGC 1 cut(s) 3072
PdmI GAANNNNTTC 6 cut(s) 1866, 2058, 3943, 4884, 5045, 5444
PfoI TCCNGGA 2 cut(s) 368, 3793
PleI GAGTC 8 cut(s) 194, 1105, 2098, 2661, 4022, 4328, 4666, 4715
PluTI GGCGCC 1 cut(s) 2001
PpsI GAGTC 8 cut(s) 194, 1105, 2098, 2661, 4022, 4328, 4666, 4715
Ppu21I YACGTR 3 cut(s) 3080, 5168, 5343
PpuMI RGGWCCY 1 cut(s) 366
PscI ACATGT 1 cut(s) 2215
PshBI ATTAAT 1 cut(s) 2967
Psp124BI GAGCTC 1 cut(s) 3348
Psp1406I AACGTT 1 cut(s) 3844
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 8 cut(s) 368, 1618, 2998, 3104, 3472, 3659, 3793, 5208
PspEI GGTNACC 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 1105
PspGI CCWGG 8 cut(s) 368, 1618, 2998, 3104, 3472, 3659, 3793, 5208
PspN4I GGNNCC 7 cut(s) 136, 1182, 1440, 1617, 1999, 3032, 3789
PspPI GGNCC 6 cut(s) 366, 1173, 2170, 2923, 3535, 5393
PspPPI RGGWCCY 1 cut(s) 366
PstI CTGCAG 1 cut(s) 4111
PstNI CAGNNNCTG 3 cut(s) 866, 3101, 3443
PsuI RGATCY 7 cut(s) 346, 1180, 1615, 3416, 4216, 4574, 4615
PvuII CAGCTG 1 cut(s) 2918
RsaI GTAC 9 cut(s) 1083, 1733, 1971, 2723, 3709, 4764, 5136, 5170, 5481
RsaNI GTAC 9 cut(s) 1082, 1732, 1970, 2722, 3708, 4763, 5135, 5169, 5480
RseI CAYNNNNRTG 5 cut(s) 712, 2969, 3057, 3867, 4008
Rsr2I CGGWCCG 1 cut(s) 1173
RsrII CGGWCCG 1 cut(s) 1173
SacI GAGCTC 1 cut(s) 3348
SalI GTCGAC 1 cut(s) 1134
SapI GCTCTTC 2 cut(s) 5, 1872
Sau96I GGNCC 6 cut(s) 366, 1173, 2170, 2923, 3535, 5393
ScaI AGTACT 4 cut(s) 1971, 2723, 3709, 5136
SchI GAGTC 8 cut(s) 194, 1105, 2099, 2662, 4023, 4329, 4667, 4715
SduI GDGCHC 6 cut(s) 1768, 1994, 3052, 3348, 4386, 4798
SfcI CTRYAG 4 cut(s) 2355, 3666, 4107, 5118
SfoI GGCGCC 1 cut(s) 1999
Sfr274I CTCGAG 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 3840
SinI GGWCC 4 cut(s) 366, 1173, 2170, 5393
SlaI CTCGAG 1 cut(s) 95
SmaI CCCGGG 1 cut(s) 797
SmiI ATTTAAAT 1 cut(s) 975
SmiMI CAYNNNNRTG 5 cut(s) 712, 2969, 3057, 3867, 4008
SmlI CTYRAG 7 cut(s) 95, 1914, 2373, 3482, 3574, 4771, 5081
SmoI CTYRAG 7 cut(s) 95, 1914, 2373, 3482, 3574, 4771, 5081
SnaBI TACGTA 1 cut(s) 5168
SseBI AGGCCT 1 cut(s) 1162
SspDI GGCGCC 1 cut(s) 1997
SspI AATATT 2 cut(s) 947, 4916
SstI GAGCTC 1 cut(s) 3348
StuI AGGCCT 1 cut(s) 1162
StyI CCWWGG 2 cut(s) 2150, 4520
SwaI ATTTAAAT 1 cut(s) 975
TaiI ACGT 8 cut(s) 1814, 3082, 3558, 3847, 4266, 5104, 5170, 5345
TaqI TCGA 8 cut(s) 96, 239, 1135, 2019, 2339, 2899, 3840, 5095
TaqII GACCGA 2 cut(s) 166, 1190
TatI WGTACW 6 cut(s) 1081, 1731, 1969, 2721, 3707, 5134
TauI GCSGC 4 cut(s) 54, 83, 4147, 4779
TseFI GTSAC 4 cut(s) 178, 4077, 4693, 4981
Tsp45I GTSAC 4 cut(s) 178, 4077, 4693, 4981
TspGWI ACGGA 4 cut(s) 1186, 3197, 3231, 4654
TspMI CCCGGG 1 cut(s) 795
Vha464I CTTAAG 1 cut(s) 3482
VneI GTGCAC 3 cut(s) 1990, 3048, 4794
VpaK11BI GGWCC 4 cut(s) 366, 1173, 2170, 5393
VspI ATTAAT 1 cut(s) 2967
XbaI TCTAGA 1 cut(s) 1046
XceI RCATGY 4 cut(s) 1402, 2190, 2219, 3920
XhoI CTCGAG 1 cut(s) 95
XmaI CCCGGG 1 cut(s) 795
XmiI GTMKAC 3 cut(s) 1135, 3552, 5286
XmnI GAANNNNTTC 6 cut(s) 1866, 2058, 3943, 4884, 5045, 5444
ZrmI AGTACT 4 cut(s) 1971, 2723, 3709, 5136
Zsp2I ATGCAT 3 cut(s) 2500, 3864, 4000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.