Rw4G033040
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
60152901 .. 60160880
7980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033040.1

Sequence Viewer

Length: 5202 bp
ATGGGAATACCTGATCGTTGCCTACCAGATCTAATAGAGAAAGTGATGTCCTGGAATTCTAGGGCAACAAGTGAGTTAAGGTCTTTGTCTGGAGAGTTGAATATGCCCGGTAACGGTAACGGTTGCAAGATGTGTTGTGATTGCCAGACAGACACCAGTGGAGTTGGTCATAGATATCACTGCCAAAGCTGTGGGCGGTGGATTTGTGGCAAGTGTATTCAGGGTGGTGAGTGGGATGGTTTGACGAGCAGTGATGAGGTTGGAGAGAAGTTCTGCAAGTTTTGTTCTGAGGTTAGATTAAGGAGGGAAGGTGGAAGAAAGTGTAGTGAGAAAGTGCATCCTTCTGCCTCTCCTGAAGAAAGCCCTGAACCACCATCCCCCTGTTTTAGCAGCGAAACTGTCAGGTGTTGTGCGGATGATGAATCCACTCGGACTGATCATCTGTCAAAGTATCTTGAAGCCCGGGATATTGGCTATTCTCCCCGTGCTGTCAAGAGTATGACTTCATTTAGTTCTTACCCATCTCCGGTAGCTGTTCATCACTCTCATAGTAGGAGTGATGAAGAAGAGGCAGAAGATTCGGCAAAGAACTTTTGCAGCCCTTCAAGTGAATATTGTGATGACAATTTGGATATAGATTTAAATAGTGTTAGTGCTAGAAGTGAGTTATACAGTTTGACGTCTCTGGGATCAAGTCAGTTTGATTGCTCATCTAGAATTTACTATACTTCTAGTAAAGGGCATTCAGTAGAGCAGAGGCATGAAGGCATCCCAGCGACTCAGAGTGATGAACCCTTTGGTCGACAGACTAAGGCTGTTTTAAAAAGGCCTGAGAGACGGACCGAAAATCCAGATATTACTGATGATTGCTCTGATGACTTGTCAGCGTTCCGCAGCCAATATGAGAAACCATTGGATTTTGATAATAATGGTCTCATCTGGTATCCACCTCCTCCCGATGATGAGAATGATGAGGCAGAGAGTAATTTCTTTTCCTATGATGATGAAGATGATGATATTGGAGATTCAGGTGCAATGTTTTCTTCCAGTAGTAGCCTTTCAAGCATGTTTCCTGCAAAGGATAAACAGAATGAGGGTAACAAGGAACCTCTTAGAGCTGTGGTTCAGGGGCATTTTAGAGCGCTTGTATCACAACTCTTACAAGGTGAGGGTTTCATGAGCAACGAGGATGGAGACGAAGACTGGCTTGACATAGTAACAACAATAGCATGGCAAGCTGCAAATTTTGTTAAACCGGATACTAGCCGAGGAGGTAGTATGGATCCTGGTGATTATGTGAAAGTTAAATGTATTCCATCAGGAAGTCCAAGCGACAGCACCCTTGTAAAAGGAGTAGTTTGTACAAAGAATATAAAGCACAAGCGCATGACTTCACAGTACAAAAATCCTAGATTACTTATTTTAGGGGGAGCACTTGAATATCAGAAAGTTCCAAACCAGTTGGCCTCTTTTGACACGTTACTGCATCAGGAAAACGATCATCTTAGAACGATTATCTCAAAGATAGAAGCTCTTCGTCCAAATGTTCTGCTGGTAGAGAAAAGCGTATCTTCATATGCTCAAGACCATCTGCTAGCAAAGGAAATATCATTAGTTCTGAATGTTAAAAGGCCATTACTAGAGCGCATAGCTCGGTGCACTGGCGCCCTTATTACTCCATCAATTGATGAAATCCCTAAAACCCGCTTGGGACATTGTGAATTGTTTCGGTTGGAAAAAATTTCTGAACAGCATGAGTCAGCTAATCAGTTCAACAAGAAACCAGTGAAAACCTTGATGTTTTTTGAAGGGTGTCCAAGGCGTCTTTGTTGCACAGTCCTGCTGAAAGGTGCATGTGTTGAACAACTGAAGAAGATCAAACATGTTGTTCAGTATGCAGTGTTTGCAGCTTATCATTTATCCCTAGAAACATCATTTCTTGTTGATGAGGGTGCTACTCTGCCCAAGATACCTAGACAGTCAATTTCAGCTAATTCTCTTACTTCGAGCAATTCCAAAGCTGTAGCTGATGCTTCTGCTCAAGATGATGATATTTTGGGTTTGATCCCAGAAATTGAAGGATCAGAATCTTTGTCCGGCCATCTTGTTCCTGACCATAGTTTTCCTTTATCTAATGGTTCTGTGGACTTTGAGGTTGGAAATGCATTTTCTGATCCCTATAATGATGATTTAGCATCTCATGTGTTTTCGGACACTTCTTCACATCAATACAAGGACATAAAGGCACTGATTGCACATTCTGCTGAGACAAAAAACATTTCCCGACTGGAGTTGCAAGAAACCTTGCCTCATGTCGGGAGTCAACACGAGGATATTGATGAATTGACGAGCTCTGAGAGGATTGATCAGAATGAGCCTTCCAGTGAGTACTTCTCTACTGCTGACACTCATCAGAGCATTTTGGTATCCTTTTCAAGCCATTGTGTTCGGAAAGGAGCTGTTTGTGAACGCTCCCGACTTCTGCGAATAAAGTTCTATGGCTGCTTTGATAAGCCACTTGGAAGATATCTTCGTGATGACCTATTTGATCGGACATCTTTCTGTCGATCTTGTAAAGAGCCAGCTGAGGCCCATGTTGTATGTTACACCCATCAACAAGGAAACCTTACCATTAATGTGAGATGCTTTCCTTCACTGAAGCTACCTGGGGAAAGAGATGGTAAAATATGGATGTGGCACCGTTGTCTGAGGTGTGCACATATAGATGGAGTTCCGCCGGCAACACGTAGAGTAGTCATGTCAGATGCTGCCTGGGGACTTTCTTTTGGAAAGTTCTTGGAACTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTAGCTACTTGTGGCCATTCATTGCAACGAGACTGTCTCCGTTACTACGGATTCGGGAGCATGGTGGCATTCTTCAGATATTCCCCCATTGATATTCTTTCTGTCCATTTGCCTCCTTCAGTGCTTGAATTCAATGGCCAAGTTCAACCAGATTGGATAAGAAAAGAGGCAACAGAGCTCATGGGGAAGATGGAAACCTTATATGCAGAGATATCTGACATACTTGACTGCATGGAAGAGAAAAATAGATCTTTTGGATGTGAAATGTCAGGGGCAGGTGGATTACAAAACCACATCGTGGAGCTGAAAGATCAGCTTAAAAAGGAAAGGAATGACTACATTGGTTTTCTGCAACCTGCTTTTGTGGAGACTTCTGAACCGGGCCAAATGGCTGTAGTAGACGTTTTGGAGCTAAATCGCTTGAGACGGTCTCTTTTAATTGGTTCTCATGTTTGGGATCGCCAGCTTTATTCATTGGATTCACTTATTCAGAAGAATCCAGTTTCCAGGGCTACAGATGGGGTTGTATCTGTTGGCTACCTGCAAGAGTTGAGTACTGATCCATCTAGTAAGGATGGCAGGCTTGATTTTGCCCATGAAGGTAATAATGTGTCTGAATGTCCAAAATTTCTGGTGCCTCCTGGAAATGATTTGCTGCCAGACAAAGAACCTAGCGCACCAATGTTTGAACGTTCTGAGGAGGATATCCATTCAGATAGGGAAATTGTTGTTGATGAGACATCCTATGAAAGCTTCCCCTCGCATGTTTCTACTCTTTCTGAGAGAATAGATTCTGCATGGACTGGAACTGATCAACTTCTGGCGAAAGCTCAACCACTTCATGCATCACAGGCAGATGGAGTCCAACCTGCTGCTGTTAGGCTGATGAGCCAAAATGATGATCCTCCTTTTAGAAGATTAATGTCACCAATGAGAGTTCACTCTTTTGATTCTGCAGTAAGATTCGAAGAAAGGATTAGGAAAGGGTTGCCGCCTTCTTCGTTGCATTTGTCAACACTAAGATCATTTCATGCTTCTGGAGATTACAGGAGTATGGTTAGAGATCCTCTTTCTAGTGTAACAAGGACTAATTCTCAGGCATTTCCGTTAGAGGCTCAGAAGTTAAACGTAATACTAAGTTCCACACCCTCATTTATCTCCTCTGCATCTCAAATAACTGATGGAGTCAGGTTGCTGCTCTCTCAGACAACCAACAATAATGTAGTTGTTGGTGTTTATGACAGCGAGCCCACAAGCATAATATCGTATGCCCTTAGTTCTAAGGATTACGAGGACTGGGTTGGTGATAAGTTGAATGATCATGAGGGGGCATGGAGCCTCCATGAAAGCTACAAAGAAGATTCAGCAGCTCCCACCTTTTCACCATGGCAATCTTTTGGTTCTATGGACTTGGATTATATCCACTATGGAAGTTACGGATCTGAAGATGCTCCATCCTCTATGAGTAACTTGTTTGCAGATCCCAAGAAATCTCCACACTTAAGGATTTCCTTTGGGGACGAGTCCTCAAATGCTGGAGGCAAAGTGAAGTTTTCTGTGACTTGTTATTTTGCAAAGCATTTTGACTCTCTTAGGAAGATATGCTGCCCTAATGAAGTGGACTTTGTACGATCCTTGAGCCGCTGCCAGAGATGGAGTGCACAAGGGGGAAAAAGCAATGTATATTTTGCCAAATCATTGGATGATAGATTTATCATAAAGCAAGTTACAAAGACAGAGTTGGAATCCTTTCAGGAATTTGCACCTGAGTATTTTAAATATTTGACAGATTCTCTTAGCTCGGGAAGCCCAACTTGTCTTGCAAAAATTCTTGGTATATATCAGGTCACTGTCAAACACCTAAAAGGTGGGAAGGAAACTAAAATGGATTTGATGGTGATGGAGAACCTTTTCTTTAAAAGAAACATATCAAGGGTATATGATCTCAAGGGGTCTGCTCGATCACGTTACAATTCTGATACTACAGGCACAAACAAAGTACTGTTGGACATGAATTTGTTGGAATCATTACGTACAAAACCCATATTTCTTGGAAGCAAAGCGAAGAGAAGCCTGGAAAGATCAATTTGGAATGATACATCCTTTTTAGCGTCTGTTGATGTGATGGACTACTCGCTGCTGGTTGGGGTAGACGATGAGCGGAAGGAACTGGTTTTGGGGATAATTGATTTCATGAGACAATATACGTGGGACAAGCATTTGGAGACATGGGTGAAGGCATCTGGAATACTTGGTGGTCCGAAGAATGCTTCCCCGACAATCATTTCTCCCAAGCAATACAAGAAAAGATTCCGGAAGGCAATGACTACCTATTTTCTCACTGTACCTGATCAATGGTCTTCCTGA

Protein Analysis

1733

Amino Acids

193.75

Weight (kDa)

5.63

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 399 - 642 5.4e-31 TCP-1/cpn60 chaperonin family
PIP5K PF01504 1500 - 1667 6.6e-36 Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K PF01504 1664 - 1722 1.2e-07 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3101
AatII GACGTC 1 cut(s) 683
Acc36I ACCTGC 4 cut(s) 3101, 3199, 3384, 3712
AccB1I GGYRCC 3 cut(s) 1664, 2697, 3469
AccB7I CCANNNNNTGG 1 cut(s) 3133
AccBSI CCGCTC 1 cut(s) 4996
AccI GTMKAC 3 cut(s) 802, 3234, 4986
AccIII TCCGGA 1 cut(s) 5148
AciI CCGC 8 cut(s) 196, 413, 892, 1705, 2735, 3827, 4477, 4996
AclI AACGTT 1 cut(s) 3526
AcoI YGGCCR 3 cut(s) 2098, 2848, 2971
AcsI RAATTY 9 cut(s) 55, 717, 1243, 1740, 2963, 3461, 4592, 4662, 4849
AcuI CTGAAG 6 cut(s) 375, 1889, 2678, 2893, 2937, 4299
AcyI GRCGYC 3 cut(s) 680, 1665, 1822
AdeI CACNNNGTG 1 cut(s) 3133
AfaI GTAC 8 cut(s) 1363, 1400, 2390, 3391, 4464, 4836, 4870, 5181
AfeI AGCGCT 1 cut(s) 1143
AfiI CCNNNNNNNGG 4 cut(s) 113, 526, 2315, 3133
AflII CTTAAG 1 cut(s) 4336
AflIII ACRYGT 3 cut(s) 1476, 1882, 2744
AjnI CCWGG 7 cut(s) 50, 1285, 2665, 2771, 3341, 3475, 4908
Alw21I GWGCWC 6 cut(s) 1435, 1661, 2354, 2719, 3015, 4498
Alw44I GTGCAC 3 cut(s) 1657, 2715, 4494
AlwNI CAGNNNCTG 1 cut(s) 2768
Ama87I CYCGRG 2 cut(s) 462, 4636
Aor13HI TCCGGA 1 cut(s) 5148
Aor51HI AGCGCT 1 cut(s) 1143
AoxI GGCC 8 cut(s) 827, 1464, 1631, 2098, 2589, 2848, 2971, 3217
ApaLI GTGCAC 3 cut(s) 1657, 2715, 4494
ApoI RAATTY 9 cut(s) 55, 717, 1243, 1740, 2963, 3461, 4592, 4662, 4849
AseI ATTAAT 2 cut(s) 2634, 3755
Asp700I GAANNNNTTC 6 cut(s) 1533, 1725, 3625, 4584, 4745, 5144
AspLEI GCGC 5 cut(s) 1144, 1386, 1647, 1667, 3512
AspS9I GGNCC 4 cut(s) 840, 2590, 3217, 5093
AsuC2I CCSGG 4 cut(s) 108, 463, 464, 3216
AsuHPI GGTGA 8 cut(s) 239, 1178, 1301, 3753, 4151, 4209, 4744, 5080
AsuII TTCGAA 1 cut(s) 3801
AsuNHI GCTAGC 1 cut(s) 1594
AvaI CYCGRG 2 cut(s) 462, 4636
AvaII GGWCC 2 cut(s) 840, 5093
BaeGI GKGCMC 3 cut(s) 1661, 2719, 4498
BalI TGGCCA 2 cut(s) 2850, 2973
BamHI GGATCC 1 cut(s) 1282
BanI GGYRCC 3 cut(s) 1664, 2697, 3469
BanII GRGCYC 3 cut(s) 2354, 3015, 4086
BauI CACGAG 1 cut(s) 2327
BbsI GAAGAC 2 cut(s) 1206, 5187
Bbv12I GWGCWC 6 cut(s) 1435, 1661, 2354, 2719, 3015, 4498
BbvCI CCTCAGC 1 cut(s) 2586
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 7 cut(s) 52, 1287, 2667, 2773, 3343, 3477, 4910
BciVI GTATCC 3 cut(s) 954, 1252, 2437
BclI TGATCA 5 cut(s) 436, 2365, 3646, 4153, 5185
BcnI CCSGG 4 cut(s) 108, 463, 464, 3216
BfmI CTRYAG 5 cut(s) 2022, 3228, 3348, 3789, 4818
BfoI RGCGCY 2 cut(s) 1145, 1668
BfrI CTTAAG 1 cut(s) 4336
BfuAI ACCTGC 4 cut(s) 3101, 3199, 3384, 3712
BfuI GTATCC 3 cut(s) 954, 1252, 2437
BglII AGATCT 2 cut(s) 28, 3083
BmcAI AGTACT 3 cut(s) 2390, 3391, 4836
Bme18I GGWCC 2 cut(s) 840, 5093
BmeT110I CYCGRG 2 cut(s) 462, 4636
BmgT120I GGNCC 4 cut(s) 840, 2590, 3217, 5093
BmiI GGNNCC 6 cut(s) 1107, 1284, 1666, 2699, 3471, 4172
BmrI ACTGGG 1 cut(s) 4141
BmtI GCTAGC 1 cut(s) 1598
BmuI ACTGGG 1 cut(s) 4141
BpiI GAAGAC 2 cut(s) 1206, 5187
BplI GAGNNNNNCTC 6 cut(s) 2378, 2410, 2856, 2888, 3250, 3282
BpmI CTGGAG 4 cut(s) 111, 2309, 3894, 4392
Bpu10I CCTNAGC 1 cut(s) 2586
Bpu14I TTCGAA 1 cut(s) 3801
BpuEI CTTGAG 5 cut(s) 1566, 2025, 3277, 4492, 4766
BpuMI CCSGG 4 cut(s) 108, 463, 464, 3216
BsaAI YACGTR 3 cut(s) 2747, 4868, 5043
BsaBI GATNNNNATC 1 cut(s) 2086
BsaHI GRCGYC 3 cut(s) 680, 1665, 1822
BsaI GGTCTC 2 cut(s) 938, 3270
BsaJI CCNNGG 7 cut(s) 462, 1267, 1817, 2666, 2772, 3342, 4220
BsaWI WCCGGW 3 cut(s) 526, 1255, 5148
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 4365, 4395
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 526, 2315, 3133
Bse118I RCCGGY 1 cut(s) 2737
Bse3DI GCAATG 4 cut(s) 1041, 2855, 4519, 5163
Bse8I GATNNNNATC 1 cut(s) 2086
BseAI TCCGGA 1 cut(s) 5148
BseBI CCWGG 7 cut(s) 52, 1287, 2667, 2773, 3343, 3477, 4910
BseDI CCNNGG 7 cut(s) 462, 1267, 1817, 2666, 2772, 3342, 4220
BseJI GATNNNNATC 1 cut(s) 2086
BseLI CCNNNNNNNGG 4 cut(s) 113, 526, 2315, 3133
BseMI GCAATG 4 cut(s) 1041, 2855, 4519, 5163
BseRI GAGGAG 4 cut(s) 942, 1284, 3548, 3985
BseSI GKGCMC 3 cut(s) 1661, 2719, 4498
BseYI CCCAGC 1 cut(s) 772
BshFI GGCC 8 cut(s) 829, 1466, 1633, 2100, 2591, 2850, 2973, 3219
BshNI GGYRCC 3 cut(s) 1664, 2697, 3469
BsiHKAI GWGCWC 6 cut(s) 1435, 1661, 2354, 2719, 3015, 4498
BsiHKCI CYCGRG 2 cut(s) 462, 4636
BsiSI CCGG 8 cut(s) 108, 463, 527, 1256, 2097, 2738, 3215, 5149
BslFI GGGAC 4 cut(s) 1725, 2790, 4367, 5060
BslI CCNNNNNNNGG 4 cut(s) 113, 526, 2315, 3133
BsmBI CGTCTC 4 cut(s) 687, 829, 1188, 3253
BsmFI GGGAC 4 cut(s) 1725, 2790, 4367, 5060
BsmI GAATGC 3 cut(s) 742, 2903, 5107
BsnI GGCC 8 cut(s) 829, 1466, 1633, 2100, 2591, 2850, 2973, 3219
Bso31I GGTCTC 2 cut(s) 938, 3270
BsoBI CYCGRG 2 cut(s) 462, 4636
Bsp119I TTCGAA 1 cut(s) 3801
Bsp1286I GDGCHC 7 cut(s) 1435, 1661, 2354, 2719, 3015, 4086, 4498
Bsp13I TCCGGA 1 cut(s) 5148
Bsp1407I TGTACA 1 cut(s) 1361
Bsp19I CCATGG 1 cut(s) 4220
BspACI CCGC 8 cut(s) 196, 413, 892, 1705, 2735, 3827, 4477, 4996
BspANI GGCC 8 cut(s) 829, 1466, 1633, 2100, 2591, 2850, 2973, 3219
BspEI TCCGGA 1 cut(s) 5148
BspHI TCATGA 3 cut(s) 1176, 4156, 5028
BspLI GGNNCC 6 cut(s) 1107, 1284, 1666, 2699, 3471, 4172
BspMAI CTGCAG 1 cut(s) 3793
BspMI ACCTGC 4 cut(s) 3101, 3199, 3384, 3712
BspOI GCTAGC 1 cut(s) 1598
BspQI GCTCTTC 1 cut(s) 1539
BspT104I TTCGAA 1 cut(s) 3801
BspT107I GGYRCC 3 cut(s) 1664, 2697, 3469
BspTI CTTAAG 1 cut(s) 4336
BspTNI GGTCTC 2 cut(s) 938, 3270
BsrBI CCGCTC 1 cut(s) 4996
BsrDI GCAATG 4 cut(s) 1041, 2855, 4519, 5163
BsrFI RCCGGY 1 cut(s) 2737
BsrGI TGTACA 1 cut(s) 1361
BssAI RCCGGY 1 cut(s) 2737
BssECI CCNNGG 7 cut(s) 462, 1267, 1817, 2666, 2772, 3342, 4220
BssNI GRCGYC 3 cut(s) 680, 1665, 1822
BssSI CACGAG 1 cut(s) 2327
BssT1I CCWWGG 2 cut(s) 1817, 4220
Bst2BI CACGAG 1 cut(s) 2327
Bst2UI CCWGG 7 cut(s) 52, 1287, 2667, 2773, 3343, 3477, 4910
Bst6I CTCTTC 4 cut(s) 561, 1539, 3066, 4895
BstACI GRCGYC 3 cut(s) 680, 1665, 1822
BstAFI CTTAAG 1 cut(s) 4336
BstAPI GCANNNNNTGC 3 cut(s) 1904, 2252, 2261
BstAUI TGTACA 1 cut(s) 1361
BstBAI YACGTR 3 cut(s) 2747, 4868, 5043
BstBI TTCGAA 1 cut(s) 3801
BstC8I GCNNGC 7 cut(s) 1236, 1596, 2583, 2739, 3299, 3416, 4082
BstDSI CCRYGG 1 cut(s) 4220
BstH2I RGCGCY 2 cut(s) 1145, 1668
BstHHI GCGC 5 cut(s) 1144, 1386, 1647, 1667, 3512
BstMWI GCNNNNNNNGC 7 cut(s) 1062, 1235, 1904, 2252, 2261, 3686, 4641
BstNI CCWGG 7 cut(s) 52, 1287, 2667, 2773, 3343, 3477, 4910
BstNSI RCATGY 4 cut(s) 1069, 1857, 1886, 3602
BstSFI CTRYAG 5 cut(s) 2022, 3228, 3348, 3789, 4818
BstSLI GKGCMC 3 cut(s) 1661, 2719, 4498
BstSNI TACGTA 1 cut(s) 4868
BstV2I GAAGAC 2 cut(s) 1206, 5187
BstX2I RGATCY 6 cut(s) 28, 1282, 3083, 3898, 4274, 4315
BstXI CCANNNNNNTGG 2 cut(s) 191, 4534
BstYI RGATCY 6 cut(s) 28, 1282, 3083, 3898, 4274, 4315
BsuI GTATCC 3 cut(s) 954, 1252, 2437
BsuRI GGCC 8 cut(s) 829, 1466, 1633, 2100, 2591, 2850, 2973, 3219
BtgI CCRYGG 1 cut(s) 4220
BtsI GCAGTG 3 cut(s) 178, 256, 1905
BveI ACCTGC 4 cut(s) 3101, 3199, 3384, 3712
Cac8I GCNNGC 7 cut(s) 1236, 1596, 2583, 2739, 3299, 3416, 4082
CaiI CAGNNNCTG 1 cut(s) 2768
CciI TCATGA 3 cut(s) 1176, 4156, 5028
CfoI GCGC 5 cut(s) 1144, 1386, 1647, 1667, 3512
Cfr10I RCCGGY 1 cut(s) 2737
Cfr13I GGNCC 4 cut(s) 840, 2590, 3217, 5093
Cfr9I CCCGGG 1 cut(s) 462
CpoI CGGWCCG 1 cut(s) 840
CseI GACGC 2 cut(s) 1811, 4935
Csp6I GTAC 8 cut(s) 1362, 1399, 2389, 3390, 4463, 4835, 4869, 5180
CspCI CAANNNNNGTGG 2 cut(s) 5024, 5059
CspI CGGWCCG 1 cut(s) 840
CviQI GTAC 8 cut(s) 1362, 1399, 2389, 3390, 4463, 4835, 4869, 5180
DinI GGCGCC 1 cut(s) 1666
DraI TTTAAA 4 cut(s) 642, 822, 4612, 4753
DraIII CACNNNGTG 1 cut(s) 3133
EaeI YGGCCR 3 cut(s) 2098, 2848, 2971
Eam1104I CTCTTC 4 cut(s) 561, 1539, 3066, 4895
EarI CTCTTC 4 cut(s) 561, 1539, 3066, 4895
EciI GGCGGA 1 cut(s) 2724
Ecl136II GAGCTC 2 cut(s) 2352, 3013
Eco105I TACGTA 1 cut(s) 4868
Eco130I CCWWGG 2 cut(s) 1817, 4220
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 3 cut(s) 2354, 3015, 4086
Eco31I GGTCTC 2 cut(s) 938, 3270
Eco32I GATATC 4 cut(s) 176, 2528, 3048, 3541
Eco47I GGWCC 2 cut(s) 840, 5093
Eco47III AGCGCT 1 cut(s) 1143
Eco53kI GAGCTC 2 cut(s) 2352, 3013
Eco57I CTGAAG 6 cut(s) 375, 1889, 2678, 2893, 2937, 4299
Eco88I CYCGRG 2 cut(s) 462, 4636
EcoICRI GAGCTC 2 cut(s) 2352, 3013
EcoRI GAATTC 2 cut(s) 55, 2963
EcoRII CCWGG 7 cut(s) 50, 1285, 2665, 2771, 3341, 3475, 4908
EcoRV GATATC 4 cut(s) 176, 2528, 3048, 3541
EcoT14I CCWWGG 2 cut(s) 1817, 4220
EcoT22I ATGCAT 2 cut(s) 2167, 3682
EcoT38I GRGCYC 3 cut(s) 2354, 3015, 4086
EgeI GGCGCC 1 cut(s) 1666
EheI GGCGCC 1 cut(s) 1666
ErhI CCWWGG 2 cut(s) 1817, 4220
Esp3I CGTCTC 4 cut(s) 687, 829, 1188, 3253
FaqI GGGAC 4 cut(s) 1725, 2790, 4367, 5060
FauI CCCGC 1 cut(s) 1712
FauNDI CATATG 1 cut(s) 1576
FbaI TGATCA 5 cut(s) 436, 2365, 3646, 4153, 5185
FblI GTMKAC 3 cut(s) 802, 3234, 4986
FriOI GRGCYC 3 cut(s) 2354, 3015, 4086
GlaI GCGC 5 cut(s) 1143, 1385, 1646, 1666, 3511
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 4 cut(s) 111, 2309, 3894, 4392
HaeII RGCGCY 2 cut(s) 1145, 1668
HaeIII GGCC 8 cut(s) 829, 1466, 1633, 2100, 2591, 2850, 2973, 3219
HapII CCGG 8 cut(s) 108, 463, 527, 1256, 2097, 2738, 3215, 5149
HgaI GACGC 2 cut(s) 1811, 4935
HhaI GCGC 5 cut(s) 1144, 1386, 1647, 1667, 3512
Hin1I GRCGYC 3 cut(s) 680, 1665, 1822
Hin6I GCGC 5 cut(s) 1142, 1384, 1645, 1665, 3510
HinP1I GCGC 5 cut(s) 1142, 1384, 1645, 1665, 3510
HincII GTYRAC 3 cut(s) 803, 2324, 3849
HindII GTYRAC 3 cut(s) 803, 2324, 3849
HindIII AAGCTT 1 cut(s) 3586
HpaII CCGG 8 cut(s) 108, 463, 527, 1256, 2097, 2738, 3215, 5149
HphI GGTGA 8 cut(s) 239, 1178, 1301, 3753, 4151, 4209, 4744, 5080
HpyCH4IV ACGT 9 cut(s) 680, 1478, 2746, 3237, 3526, 3963, 4801, 4867, 5042
HpyF10VI GCNNNNNNNGC 7 cut(s) 1062, 1235, 1904, 2252, 2261, 3686, 4641
HpySE526I ACGT 9 cut(s) 680, 1478, 2746, 3237, 3526, 3963, 4801, 4867, 5042
Hsp92I GRCGYC 3 cut(s) 680, 1665, 1822
HspAI GCGC 5 cut(s) 1142, 1384, 1645, 1665, 3510
KasI GGCGCC 1 cut(s) 1664
Kpn2I TCCGGA 1 cut(s) 5148
KroI GCCGGC 1 cut(s) 2737
KroNI GCCGGC 1 cut(s) 2739
Ksp22I TGATCA 5 cut(s) 436, 2365, 3646, 4153, 5185
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 9 cut(s) 1430, 2456, 2477, 2892, 3136, 3244, 4170, 4210, 4291
MaeII ACGT 9 cut(s) 680, 1478, 2746, 3237, 3526, 3963, 4801, 4867, 5042
MbiI CCGCTC 1 cut(s) 4996
MfeI CAATTG 1 cut(s) 1683
MflI RGATCY 6 cut(s) 28, 1282, 3083, 3898, 4274, 4315
MhlI GDGCHC 7 cut(s) 1435, 1661, 2354, 2719, 3015, 4086, 4498
MlsI TGGCCA 2 cut(s) 2850, 2973
MluNI TGGCCA 2 cut(s) 2850, 2973
Mly113I GGCGCC 1 cut(s) 1665
MlyI GAGTC 7 cut(s) 772, 1766, 2329, 3705, 4029, 4367, 4415
MmeI TCCRAC 7 cut(s) 241, 1713, 2137, 3724, 4557, 4821, 4836
Mox20I TGGCCA 2 cut(s) 2850, 2973
Mph1103I ATGCAT 2 cut(s) 2167, 3682
MroI TCCGGA 1 cut(s) 5148
MroNI GCCGGC 1 cut(s) 2737
MroXI GAANNNNTTC 6 cut(s) 1533, 1725, 3625, 4584, 4745, 5144
MscI TGGCCA 2 cut(s) 2850, 2973
MslI CAYNNNNRTG 2 cut(s) 2636, 2724
Msp20I TGGCCA 2 cut(s) 2850, 2973
MspA1I CMGCKG 2 cut(s) 2585, 4479
MspCI CTTAAG 1 cut(s) 4336
MspI CCGG 8 cut(s) 108, 463, 527, 1256, 2097, 2738, 3215, 5149
MunI CAATTG 1 cut(s) 1683
Mva1269I GAATGC 3 cut(s) 742, 2903, 5107
MvaI CCWGG 7 cut(s) 52, 1287, 2667, 2773, 3343, 3477, 4910
MwoI GCNNNNNNNGC 7 cut(s) 1062, 1235, 1904, 2252, 2261, 3686, 4641
NaeI GCCGGC 1 cut(s) 2739
NarI GGCGCC 1 cut(s) 1665
NciI CCSGG 4 cut(s) 108, 463, 464, 3216
NcoI CCATGG 1 cut(s) 4220
NdeI CATATG 1 cut(s) 1576
NgoMIV GCCGGC 1 cut(s) 2737
NheI GCTAGC 1 cut(s) 1594
NlaIV GGNNCC 6 cut(s) 1107, 1284, 1666, 2699, 3471, 4172
NmeAIII GCCGAG 1 cut(s) 1292
NmuCI GTSAC 3 cut(s) 3759, 4393, 4681
NsiI ATGCAT 2 cut(s) 2167, 3682
NspI RCATGY 4 cut(s) 1069, 1857, 1886, 3602
NspV TTCGAA 1 cut(s) 3801
PagI TCATGA 3 cut(s) 1176, 4156, 5028
PaqCI CACCTGC 1 cut(s) 3101
PceI AGGCCT 1 cut(s) 829
PciI ACATGT 1 cut(s) 1882
PciSI GCTCTTC 1 cut(s) 1539
PctI GAATGC 3 cut(s) 742, 2903, 5107
PdiI GCCGGC 1 cut(s) 2739
PdmI GAANNNNTTC 6 cut(s) 1533, 1725, 3625, 4584, 4745, 5144
PflMI CCANNNNNTGG 1 cut(s) 3133
PfoI TCCNGGA 2 cut(s) 50, 3475
PleI GAGTC 7 cut(s) 772, 1765, 2328, 3704, 4028, 4366, 4415
PluTI GGCGCC 1 cut(s) 1668
PpsI GAGTC 7 cut(s) 772, 1765, 2328, 3704, 4028, 4366, 4415
Ppu21I YACGTR 3 cut(s) 2747, 4868, 5043
PscI ACATGT 1 cut(s) 1882
PshBI ATTAAT 2 cut(s) 2634, 3755
Psp124BI GAGCTC 2 cut(s) 2354, 3015
Psp1406I AACGTT 1 cut(s) 3526
Psp6I CCWGG 7 cut(s) 50, 1285, 2665, 2771, 3341, 3475, 4908
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 7 cut(s) 50, 1285, 2665, 2771, 3341, 3475, 4908
PspN4I GGNNCC 6 cut(s) 1107, 1284, 1666, 2699, 3471, 4172
PspPI GGNCC 4 cut(s) 840, 2590, 3217, 5093
PstI CTGCAG 1 cut(s) 3793
PstNI CAGNNNCTG 1 cut(s) 2768
PsuI RGATCY 6 cut(s) 28, 1282, 3083, 3898, 4274, 4315
PvuII CAGCTG 1 cut(s) 2585
RsaI GTAC 8 cut(s) 1363, 1400, 2390, 3391, 4464, 4836, 4870, 5181
RsaNI GTAC 8 cut(s) 1362, 1399, 2389, 3390, 4463, 4835, 4869, 5180
RseI CAYNNNNRTG 2 cut(s) 2636, 2724
Rsr2I CGGWCCG 1 cut(s) 840
RsrII CGGWCCG 1 cut(s) 840
SacI GAGCTC 2 cut(s) 2354, 3015
SalI GTCGAC 1 cut(s) 801
SapI GCTCTTC 1 cut(s) 1539
Sau96I GGNCC 4 cut(s) 840, 2590, 3217, 5093
ScaI AGTACT 3 cut(s) 2390, 3391, 4836
SchI GAGTC 7 cut(s) 772, 1766, 2329, 3705, 4029, 4367, 4415
SduI GDGCHC 7 cut(s) 1435, 1661, 2354, 2719, 3015, 4086, 4498
SfcI CTRYAG 5 cut(s) 2022, 3228, 3348, 3789, 4818
SfoI GGCGCC 1 cut(s) 1666
SfuI TTCGAA 1 cut(s) 3801
SinI GGWCC 2 cut(s) 840, 5093
SmaI CCCGGG 1 cut(s) 464
SmiI ATTTAAAT 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 2636, 2724
SmlI CTYRAG 6 cut(s) 1581, 2040, 3256, 4336, 4471, 4781
SmoI CTYRAG 6 cut(s) 1581, 2040, 3256, 4336, 4471, 4781
SnaBI TACGTA 1 cut(s) 4868
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 8 cut(s) 196, 413, 892, 1705, 2735, 3827, 4477, 4996
SspDI GGCGCC 1 cut(s) 1664
SspI AATATT 2 cut(s) 614, 4616
SstI GAGCTC 2 cut(s) 2354, 3015
StuI AGGCCT 1 cut(s) 829
StyI CCWWGG 2 cut(s) 1817, 4220
SwaI ATTTAAAT 1 cut(s) 642
TaiI ACGT 9 cut(s) 683, 1481, 2749, 3240, 3529, 3966, 4804, 4870, 5045
TaqI TCGA 5 cut(s) 802, 2006, 2566, 3801, 4795
TaqII GACCGA 1 cut(s) 857
TatI WGTACW 5 cut(s) 1361, 1398, 2388, 3389, 4834
TauI GCSGC 2 cut(s) 3829, 4479
TseFI GTSAC 3 cut(s) 3759, 4393, 4681
Tsp45I GTSAC 3 cut(s) 3759, 4393, 4681
TspGWI ACGGA 5 cut(s) 853, 2864, 2898, 3930, 4287
TspMI CCCGGG 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 3133
Vha464I CTTAAG 1 cut(s) 4336
VneI GTGCAC 3 cut(s) 1657, 2715, 4494
VpaK11BI GGWCC 2 cut(s) 840, 5093
VspI ATTAAT 2 cut(s) 2634, 3755
XapI RAATTY 9 cut(s) 55, 717, 1243, 1740, 2963, 3461, 4592, 4662, 4849
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 4 cut(s) 1069, 1857, 1886, 3602
XmaI CCCGGG 1 cut(s) 462
XmiI GTMKAC 3 cut(s) 802, 3234, 4986
XmnI GAANNNNTTC 6 cut(s) 1533, 1725, 3625, 4584, 4745, 5144
ZraI GACGTC 1 cut(s) 681
ZrmI AGTACT 3 cut(s) 2390, 3391, 4836
Zsp2I ATGCAT 2 cut(s) 2167, 3682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.