Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006044

Physical Location & Seq

Genomic Coordinates Reverse (-)

19909896 .. 19910420

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATACAAGGGGGAAAAAGCAATGTATATTTTGCCAAATCATTGGATGATAGATTTATCATAAAGCAAGTTACAAAGACAGAGTTGGAATCTTTTCAGGAATTTGCACCTGAGTATTTTAAATATTTGACAGATTCTCTTAGCTCGGGAAGCCCAACTTGTCTTGCAAAAATTCTTGGTATATATCAGGTCACTGTCAAACACCTAAAAGGTGGGAAGGAAACTAAAATGGATTTGATGGTGATGGAGAACCTTTTCTTTAAAAGAAACATATCAAGGGTATATGATCTCAAGGGGTCTGCTCGATCACGTTACAATTCTGATATTACAGGCACAAACAAAGTACTGTTGGACATCAGTTTGTTGGAATCATCCATATCATTCCAATTACGGCGACAAGTCAGGCAACTAGTCCAACTAAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010118 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

9.65

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	3 - 136	2.2e-24	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71010
fragaria_vesca	FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320 FvH4_4g32320
malus_domestica	MD13G1026200.v1.1 MD16G1029100.v1.1
prunus_persica	Prupe.1G323700_v2.0.a1 Prupe.1G323700_v2.0.a1
pyrus_communis	pycom13g02450 pycom13g02470 pycom16g02480 pycom16g02500
rosa_chinensis	RchiOBHm_Chr4g0441111
rosa_laevigata	RLG00000006113
rosa_multiflora	Rmu_sc0006317.1_g000017 Rmu_sc0027558.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382080
rosa_rugosa	Rorug04G0331100 Rorug04G0331200
rosa_samantha	Rh4AG382800 Rh4BG396600 Rh4CG411700 Rh4DG389400 Rh6CG153000
rosa_wichuraiana	Rw4G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	101, 171
AfaI	GTAC	1 cut(s)	345
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	101, 171
Asp700I	GAANNNNTTC	2 cut(s)	93, 254
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	145
BccI	CCATC	2 cut(s)	232, 238
BceAI	ACGGC	1 cut(s)	407
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	1 cut(s)	410
BmcAI	AGTACT	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	52, 371
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	286, 305
BspCNI	CTCAG	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	28
BssMI	GATC	2 cut(s)	286, 305
Bst4CI	ACNGT	2 cut(s)	196, 348
BstDEI	CTNAG	2 cut(s)	111, 140
BstF5I	GGATG	2 cut(s)	52, 371
BstKTI	GATC	2 cut(s)	289, 308
BstMBI	GATC	2 cut(s)	286, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	52, 371
BtsIMutI	CAGTG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	344
CviJI	RGCY	2 cut(s)	144, 153
CviKI_1	RGCY	2 cut(s)	144, 153
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	111, 140
DpnI	GATC	2 cut(s)	288, 307
DpnII	GATC	2 cut(s)	286, 305
DraI	TTTAAA	2 cut(s)	121, 262
Eco88I	CYCGRG	1 cut(s)	145
FaiI	YATR	8 cut(s)	28, 62, 182, 184, 272, 283, 285, 377
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FokI	GGATG	2 cut(s)	59, 358
FspBI	CTAG	1 cut(s)	410
HinfI	GANTC	3 cut(s)	89, 134, 368
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	98, 147
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	196, 348
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	107, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	111, 140
HpySE526I	ACGT	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	286, 305
LpnPI	CCDG	5 cut(s)	83, 123, 173, 315, 388
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	3 cut(s)	70, 190, 311
MalI	GATC	2 cut(s)	288, 307
MboI	GATC	2 cut(s)	286, 305
MluCI	AATT	4 cut(s)	101, 171, 316, 386
MmeI	TCCRAC	3 cut(s)	66, 330, 345
MroXI	GAANNNNTTC	2 cut(s)	93, 254
MseI	TTAA	2 cut(s)	120, 261
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	286, 305
NmuCI	GTSAC	1 cut(s)	190
PdmI	GAANNNNTTC	2 cut(s)	93, 254
PfeI	GAWTC	3 cut(s)	89, 134, 368
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	120, 261
Sau3AI	GATC	2 cut(s)	286, 305
ScaI	AGTACT	1 cut(s)	345
SetI	ASST	7 cut(s)	112, 146, 192, 207, 214, 255, 313
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	4 cut(s)	101, 171, 316, 386
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	196, 348
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	304
TasI	AATT	4 cut(s)	101, 171, 316, 386
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	89, 134, 368
Tru1I	TTAA	2 cut(s)	120, 261
Tru9I	TTAA	2 cut(s)	120, 261
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	101, 171
XmnI	GAANNNNTTC	2 cut(s)	93, 254
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.