pycom13g02470
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
1710699 .. 1712587
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02470.2

Sequence Viewer

Length: 1569 bp
ATGGTGAGAGATCCTGTTTCTAGAGTCAGAAGGACTCTTTCCCAGGCATTGCCTCTAGAGGCACAGAAGTTGGATTCGATACTCAATTCCACACCCTCGTTTGTCTCCTCTGCATCTCAAATAGCTGATGGGGTTCGGTTGCTGCTTTCCCAGACAAGCAACAATGACATAGTTGTTGGTGTTTATGATAGCGAGCCCACTAGCATAATCTCATATGCCCTTAGTTCCAAAGATTATGAGGATTGGGTTGCTGATAATTTGAATGAGCATCAGGCAGGCTGGAGTATTCGTGAAAGCTTAAAAGAAGATTCTACAGCTTCTATCTTTTCACCCTGGCAGTCTTTTGGCTCTATGGACTTGGATTATATCCCTTATGGATCTGAAGATACTTCAGCTTCCATGGGTAACCTGTTTGCCGATGCCAAAAGATCTCCACATCTGAGGATTTCTTTTGGGGACGAGTCCTCAAATGGGGTAGGAAAAGTGAAATTTTATGTGACGTGTTATTTTGCAGAGCAGTTTGACTCTCTTAGGAAAAAGTGCTGCCCCAGTGAAGTGGATTTTGTACGATCTTTGAGCCGCTGCAAGAGGTGGAGTGCACAGGGGGGAAAGAGCAATGTGTATTTTGCTAAATCTCTGGATGATAGATTCATCATAAAACAAGTCACGAAGACGGAATTGGAATCCTTTCAGGAATTTGCACCTGAGTACTTTAAATATTTGACAGATTCCCTTAGCTCAGGAAGCCCAACTTGTCTTGCCAAGGTTCTTGGTATATATCAGGTCACTGTTAAACATCTAAAAGGTGGGAAGGAAACTAAAATGGATTTGATGGTGATGGAGAACCTGTTTTTCAAAAGAAATATTTCAAGGGTATATGATCTCAAGGGATCTACTCGATCCCGTTATAATTCTGATACAACGGGGGGAGACAAAGTACTGTTAGATATGAATCTGTTGGAATCATTACGTACACAACCCATGTTTCTTGGAAGCAAAGCAAAGAGAAGCCTGGAAAGAGCTATTTGGAATGATACGTCATTTTTAGCGTCTGTCGATGTAATGGACTACTCACTGCTGGTTGGGGTGGACGATGAGCGGAAGGAGCTGGTCTTGGGGATCGATAGATTTCATGAGACAATATACATGGGACAAGCATTTGGAGACATGGGTAAAGGCATCCGGGATACTTGGTGGTCCGAAGAATGCTGCTCCGACTATTGTTTCCCCCAAGCAATACAAGAAACGATTCAGGAAGGCGATGACCACGTATTTTCTCACCGTGCCGGATCAATGGTCGTCATGAAACACAGCATTCTTTTTTGTTCACAAAAGATGTGTTCGCTAATAAGTCCTGCAGGGGAATTGTTACTTCTGATAAAACGGAGAGGAGGGAAACCCCTCCATCTTCTTCTTCTTCCCCTTTCTTTTGTATATGGGGGCAGAGTTGAATTAACCCAAATGAGATTTGTTACCCGCTGTAATTGTGAAGAGTTGGTAACTCTTGTTATTTTGTATGTCAAAGTTACCGACAATGTAGGATTTTTACTATTTAGCCATGCGATGTAA

Protein Analysis

523

Amino Acids

58.8

Weight (kDa)

6.06

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AccBSI CCGCTC 1 cut(s) 1099
AciI CCGC 3 cut(s) 580, 1099, 1477
AclWI GGATC 6 cut(s) 5, 385, 894, 898, 1127, 1297
AcsI RAATTY 2 cut(s) 488, 695
AcuI CTGAAG 2 cut(s) 375, 402
AfaI GTAC 4 cut(s) 567, 710, 939, 973
AfiI CCNNNNNNNGG 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 500
AgsI TTSAA 4 cut(s) 262, 856, 870, 1451
AjiI CACGTC 1 cut(s) 501
AjnI CCWGG 3 cut(s) 42, 332, 1011
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 7 cut(s) 125, 297, 317, 395, 738, 1022, 1108
AluI AGCT 7 cut(s) 125, 297, 317, 395, 738, 1022, 1108
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 4 cut(s) 109, 924, 1130, 1158
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 6 cut(s) 5, 385, 894, 898, 1127, 1297
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 4 cut(s) 142, 543, 582, 1209
ApoI RAATTY 2 cut(s) 488, 695
Asp700I GAANNNNTTC 3 cut(s) 687, 865, 1248
AspS9I GGNCC 1 cut(s) 1197
AsuC2I CCSGG 1 cut(s) 1184
AsuHPI GGTGA 4 cut(s) 16, 321, 847, 1271
AvaII GGWCC 1 cut(s) 1197
BaeGI GKGCMC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 4 cut(s) 129, 530, 569, 1196
BccI CCATC 4 cut(s) 122, 826, 832, 1413
BciT130I CCWGG 3 cut(s) 44, 334, 1013
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 1184
BcoDI GTCTC 4 cut(s) 109, 924, 1130, 1158
BfaI CTAG 3 cut(s) 21, 56, 201
BfmI CTRYAG 2 cut(s) 312, 1356
BfuI GTATCC 1 cut(s) 1180
BglII AGATCT 1 cut(s) 428
BisI GCNGC 5 cut(s) 143, 544, 580, 583, 1210
BlsI GCNGC 5 cut(s) 144, 545, 581, 584, 1211
BmcAI AGTACT 2 cut(s) 710, 939
Bme1390I CCNGG 4 cut(s) 44, 334, 1013, 1184
Bme18I GGWCC 1 cut(s) 1197
BmgBI CACGTC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 1197
BmrFI CCNGG 4 cut(s) 44, 334, 1013, 1184
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 4 cut(s) 122, 277, 409, 1188
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 2 cut(s) 734, 739
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 1184
Bsa29I ATCGAT 1 cut(s) 1122
BsaAI YACGTR 2 cut(s) 971, 1270
BsaBI GATNNNNATC 1 cut(s) 951
BsaJI CCNNGG 4 cut(s) 42, 332, 399, 762
BsaXI ACNNNNNCTCC 6 cut(s) 274, 304, 833, 863, 921, 951
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 2 cut(s) 47, 622
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 3 cut(s) 44, 334, 1013
BseCI ATCGAT 1 cut(s) 1122
BseDI CCNNGG 4 cut(s) 42, 332, 399, 762
BseGI GGATG 2 cut(s) 646, 1179
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 2 cut(s) 47, 622
BseMII CTCAG 3 cut(s) 431, 696, 753
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 97, 1404
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 4 cut(s) 129, 530, 569, 1196
BshVI ATCGAT 1 cut(s) 1122
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 2 cut(s) 1183, 1287
BslFI GGGAC 2 cut(s) 470, 1164
BslI CCNNNNNNNGG 1 cut(s) 471
BsmAI GTCTC 4 cut(s) 109, 924, 1130, 1158
BsmFI GGGAC 2 cut(s) 470, 1164
BsmI GAATGC 2 cut(s) 1211, 1314
Bsp1286I GDGCHC 2 cut(s) 198, 601
Bsp143I GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 3 cut(s) 580, 1099, 1477
BspCNI CTCAG 3 cut(s) 432, 697, 752
BspDI ATCGAT 1 cut(s) 1122
BspHI TCATGA 2 cut(s) 1132, 1302
BspMAI CTGCAG 1 cut(s) 1360
BspPI GGATC 6 cut(s) 5, 385, 894, 898, 1127, 1297
BsrBI CCGCTC 1 cut(s) 1099
BsrDI GCAATG 2 cut(s) 47, 622
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 4 cut(s) 42, 332, 399, 762
BssMI GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
BssT1I CCWWGG 2 cut(s) 399, 762
Bst2UI CCWGG 3 cut(s) 44, 334, 1013
Bst4CI ACNGT 3 cut(s) 790, 942, 1283
Bst6I CTCTTC 1 cut(s) 1485
BstBAI YACGTR 2 cut(s) 971, 1270
BstC8I GCNNGC 2 cut(s) 194, 277
BstDEI CTNAG 6 cut(s) 221, 440, 530, 705, 734, 739
BstDSI CCRYGG 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 2 cut(s) 646, 1179
BstKTI GATC 9 cut(s) 13, 380, 431, 572, 883, 893, 902, 1122, 1292
BstMAI GTCTC 4 cut(s) 109, 924, 1130, 1158
BstMBI GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
BstMWI GCNNNNNNNGC 2 cut(s) 744, 1105
BstNI CCWGG 3 cut(s) 44, 334, 1013
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 4 cut(s) 42, 332, 1011, 1182
BstSFI CTRYAG 2 cut(s) 312, 1356
BstSLI GKGCMC 1 cut(s) 601
BstSNI TACGTA 1 cut(s) 971
BstV1I GCAGC 4 cut(s) 129, 530, 569, 1196
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 4 cut(s) 10, 377, 428, 890
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 4 cut(s) 10, 377, 428, 890
Bsu15I ATCGAT 1 cut(s) 1122
BsuI GTATCC 1 cut(s) 1180
BsuTUI ATCGAT 1 cut(s) 1122
BtgI CCRYGG 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 1275
BtrI CACGTC 1 cut(s) 501
BtsCI GGATG 2 cut(s) 646, 1179
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 3 cut(s) 556, 786, 1073
Cac8I GCNNGC 2 cut(s) 194, 277
CciI TCATGA 2 cut(s) 1132, 1302
Cfr13I GGNCC 1 cut(s) 1197
ClaI ATCGAT 1 cut(s) 1122
CseI GACGC 1 cut(s) 1038
Csp6I GTAC 4 cut(s) 566, 709, 938, 972
CviAII CATG 7 cut(s) 400, 982, 1133, 1147, 1168, 1303, 1559
CviQI GTAC 4 cut(s) 566, 709, 938, 972
DdeI CTNAG 6 cut(s) 221, 440, 530, 705, 734, 739
DpnI GATC 9 cut(s) 12, 379, 430, 571, 882, 892, 901, 1121, 1291
DpnII GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
DraI TTTAAA 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 1485
EarI CTCTTC 1 cut(s) 1485
Eco105I TACGTA 1 cut(s) 971
Eco130I CCWWGG 2 cut(s) 399, 762
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 1197
Eco57I CTGAAG 2 cut(s) 375, 402
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 42, 332, 1011
EcoT14I CCWWGG 2 cut(s) 399, 762
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 399, 762
FaeI CATG 7 cut(s) 403, 985, 1136, 1150, 1171, 1306, 1562
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FaqI GGGAC 2 cut(s) 470, 1164
FatI CATG 7 cut(s) 399, 981, 1132, 1146, 1167, 1302, 1558
FauI CCCGC 1 cut(s) 1484
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 143, 544, 580, 583, 1210
FokI GGATG 2 cut(s) 653, 1166
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 143, 544, 580, 583, 1210
FspBI CTAG 3 cut(s) 21, 56, 201
GluI GCNGC 5 cut(s) 143, 544, 580, 583, 1210
GsuI CTGGAG 1 cut(s) 301
HapII CCGG 2 cut(s) 1183, 1287
HgaI GACGC 1 cut(s) 1038
Hin1II CATG 7 cut(s) 403, 985, 1136, 1150, 1171, 1306, 1562
HindIII AAGCTT 1 cut(s) 295
HpaII CCGG 2 cut(s) 1183, 1287
HphI GGTGA 4 cut(s) 16, 321, 847, 1271
Hpy166II GTNNAC 4 cut(s) 599, 974, 1090, 1328
Hpy188I TCNGA 7 cut(s) 29, 382, 441, 916, 1201, 1216, 1377
Hpy8I GTNNAC 4 cut(s) 599, 974, 1090, 1328
HpyAV CCTTC 4 cut(s) 24, 805, 1096, 1250
HpyCH4III ACNGT 3 cut(s) 790, 942, 1283
HpyCH4IV ACGT 4 cut(s) 500, 970, 1037, 1269
HpyCH4V TGCA 6 cut(s) 113, 512, 585, 599, 701, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 744, 1105
HpyF3I CTNAG 6 cut(s) 221, 440, 530, 705, 734, 739
HpySE526I ACGT 4 cut(s) 500, 970, 1037, 1269
Hsp92II CATG 7 cut(s) 403, 985, 1136, 1150, 1171, 1306, 1562
Kzo9I GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
LmnI GCTCC 2 cut(s) 1105, 1217
Lsp1109I GCAGC 4 cut(s) 129, 530, 569, 1196
LweI GCATC 4 cut(s) 122, 277, 409, 1188
MaeI CTAG 3 cut(s) 21, 56, 201
MaeII ACGT 4 cut(s) 500, 970, 1037, 1269
MaeIII GTNAC 8 cut(s) 404, 496, 664, 784, 1368, 1471, 1498, 1525
MalI GATC 9 cut(s) 12, 379, 430, 571, 882, 892, 901, 1121, 1291
MbiI CCGCTC 1 cut(s) 1099
MboI GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
MboII GAAGA 9 cut(s) 317, 395, 682, 1214, 1400, 1403, 1406, 1409, 1502
MflI RGATCY 4 cut(s) 10, 377, 428, 890
MhlI GDGCHC 2 cut(s) 198, 601
MluCI AATT 9 cut(s) 85, 256, 488, 677, 695, 910, 1364, 1451, 1483
MlyI GAGTC 4 cut(s) 28, 33, 470, 518
MmeI TCCRAC 3 cut(s) 51, 939, 1239
MroXI GAANNNNTTC 3 cut(s) 687, 865, 1248
MseI TTAA 4 cut(s) 299, 714, 792, 1454
MspA1I CMGCKG 2 cut(s) 582, 1479
MspI CCGG 2 cut(s) 1183, 1287
MspR9I CCNGG 4 cut(s) 44, 334, 1013, 1184
Mva1269I GAATGC 2 cut(s) 1211, 1314
MvaI CCWGG 3 cut(s) 44, 334, 1013
MwoI GCNNNNNNNGC 2 cut(s) 744, 1105
NciI CCSGG 1 cut(s) 1184
NcoI CCATGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 214
NdeII GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
NlaIII CATG 7 cut(s) 403, 985, 1136, 1150, 1171, 1306, 1562
NmuCI GTSAC 3 cut(s) 496, 664, 784
PagI TCATGA 2 cut(s) 1132, 1302
PctI GAATGC 2 cut(s) 1211, 1314
PdmI GAANNNNTTC 3 cut(s) 687, 865, 1248
PfeI GAWTC 8 cut(s) 74, 308, 648, 683, 728, 952, 962, 1249
PfoI TCCNGGA 1 cut(s) 1182
PkrI GCNGC 5 cut(s) 144, 545, 581, 584, 1211
PleI GAGTC 4 cut(s) 28, 32, 469, 518
PpsI GAGTC 4 cut(s) 28, 32, 469, 518
Ppu21I YACGTR 2 cut(s) 971, 1270
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 3 cut(s) 42, 332, 1011
PspEI GGTNACC 1 cut(s) 404
PspGI CCWGG 3 cut(s) 42, 332, 1011
PspPI GGNCC 1 cut(s) 1197
PstI CTGCAG 1 cut(s) 1360
PsuI RGATCY 4 cut(s) 10, 377, 428, 890
RsaI GTAC 4 cut(s) 567, 710, 939, 973
RsaNI GTAC 4 cut(s) 566, 709, 938, 972
SaqAI TTAA 4 cut(s) 299, 714, 792, 1454
SatI GCNGC 5 cut(s) 143, 544, 580, 583, 1210
Sau3AI GATC 9 cut(s) 10, 377, 428, 569, 880, 890, 899, 1119, 1289
Sau96I GGNCC 1 cut(s) 1197
SbfI CCTGCAGG 1 cut(s) 1360
ScaI AGTACT 2 cut(s) 710, 939
SchI GAGTC 4 cut(s) 28, 33, 470, 518
ScrFI CCNGG 4 cut(s) 44, 334, 1013, 1184
SdaI CCTGCAGG 1 cut(s) 1360
SduI GDGCHC 2 cut(s) 198, 601
SfaNI GCATC 4 cut(s) 122, 277, 409, 1188
SfcI CTRYAG 2 cut(s) 312, 1356
SinI GGWCC 1 cut(s) 1197
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SnaBI TACGTA 1 cut(s) 971
Sse8387I CCTGCAGG 1 cut(s) 1360
Sse9I AATT 9 cut(s) 85, 256, 488, 677, 695, 910, 1364, 1451, 1483
SsiI CCGC 3 cut(s) 580, 1099, 1477
SspI AATATT 2 cut(s) 719, 865
SspMI CTAG 3 cut(s) 21, 56, 201
StyD4I CCNGG 4 cut(s) 42, 332, 1011, 1182
StyI CCWWGG 2 cut(s) 399, 762
TaaI ACNGT 3 cut(s) 790, 942, 1283
TaiI ACGT 4 cut(s) 503, 973, 1040, 1272
TaqI TCGA 4 cut(s) 77, 898, 1056, 1122
TasI AATT 9 cut(s) 85, 256, 488, 677, 695, 910, 1364, 1451, 1483
TatI WGTACW 2 cut(s) 708, 937
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 8 cut(s) 74, 308, 648, 683, 728, 952, 962, 1249
Tru1I TTAA 4 cut(s) 299, 714, 792, 1454
Tru9I TTAA 4 cut(s) 299, 714, 792, 1454
TscAI CASTG 3 cut(s) 556, 793, 1080
TseFI GTSAC 3 cut(s) 496, 664, 784
TseI GCWGC 4 cut(s) 142, 543, 582, 1209
Tsp45I GTSAC 3 cut(s) 496, 664, 784
TspDTI ATGAA 4 cut(s) 640, 965, 1121, 1319
TspGWI ACGGA 2 cut(s) 689, 1399
TspRI CASTG 3 cut(s) 556, 793, 1080
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 1197
XapI RAATTY 2 cut(s) 488, 695
XbaI TCTAGA 2 cut(s) 20, 55
XmnI GAANNNNTTC 3 cut(s) 687, 865, 1248
XspI CTAG 3 cut(s) 21, 56, 201
ZrmI AGTACT 2 cut(s) 710, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.