AT1G71070

glycosyltransferase family 14 protein core-2 I-branching enzyme family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016227
Physical Location & Seq
Reverse (-)
26807183 .. 26809520
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71070.1

Sequence Viewer

Length: 1188 bp
ATGGGAGCTGAAAAGAAATGGCTTTTCACACTCTTCTCTGTAGTATTCCTCTCAGTGTTCCTTCTCTTACTTTATTCTATCTCTGCTTTCACCTCTAAACCATTCCCTTCTTCAATTCGTCACGGTGCTCATTACCCACCTGCTTTTGCTTATTACATAACCGGTGGTCGTGGAGATAATGACCGGATCTCTCGGTTATTGCTTGCGGTTTATCATCCTAGGAATCGGTATCTTATCCATCTGGGTGCTGAAGCTACTGATGCAGAGAGGCTAGCTCTTCTCTCTGATTTGAAATCTGTTCCTGCTGTGAATGCTTTTGGGAATGTTGATGTTTTAGGGAAAGTTGATCGTTTGTCTGAGAATGGTGCTTCTAAGATTGCTTCTACTCTTCACGCTGTTTCTATTCTTCTTAAGCTTGATCCTACTTGGAATTGGTTTATTGAGCTTAGTGCTTTGGATTATCCTCTCATAACTCAAGATGACCTATCTCATGTGTTTGCCTCGGTGAACAGAAGTCTCAATTTTATTGATCACACTAGTGACCTTGCTTGGAAAGAATCTCAGAGAATCAAGCCTATTGTTGTTGATCCAGCACTTTACTTAGCTAGAAGAACTCAGCTCTTCACTGCTACCGAAAAGCGACCAACACCAGATGCATTCAAAGTCTTTACAGGCTCGCCTTGGATTGTACTAAGCAGACCTTTCCTAGAATACTGCATCTTCGGTTGGGATAATTTACCAAGAATCCTTCTCATGTATTTTAACAATGTCATTCTCTCTGAAGAATGCTACTTCCACACGGTGATATGCAACGCACCGGAGTTCAGTAACACGACAGTCAACGGGGACTTACGATACATGATATGGGACAGTCCACCAAAAATGGAACCACATTTCCTTACTATATCGGATTTCGACCAAATGGCTCAAAGCGGAGCAGCTTTCGCTAGACAATTCAAGAAAGATGATCCAGTACTCGACATGGTCGATAGAGAGATCCTGAAACGTGGACGTTACAGAGTCACTCCTGGCGCTTGGTGCTCGAGCCACAGTAGCTGGTGGACAGATCCTTGCTCGGAGTGGGATGAAGTAAACATTGTCAAAGCTGGACCTCAAGCTAAGAAGCTAGACGAAACAATAACGAATTTTCTTGATGATTTGAATTCACAATCGAATCAATGCAAGTGA

Protein Analysis

395

Amino Acids

44.92

Weight (kDa)

6.21

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 49 - 308 4.5e-72 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71070
fragaria_vesca FvH4_4g32220
malus_domestica MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica Prupe.1G322800_v2.0.a1
pyrus_communis pycom13g02580 pycom16g02570
rosa_chinensis RchiOBHm_Chr4g0440961
rosa_laevigata RLG00000006136
rosa_multiflora Rmu_sc0000424.1_g000027
rosa_roxburghii Rroxscaffold_5G00381820
rosa_rugosa Rorug04G0329700
rosa_samantha Rh4AG381500 Rh4DG388000
rosa_wichuraiana Rw4G032860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AciI CCGC 2 cut(s) 206, 933
AclWI GGATC 6 cut(s) 194, 413, 581, 962, 991, 1061
AcsI RAATTY 2 cut(s) 1144, 1162
AcuI CTGAAG 2 cut(s) 270, 801
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 690, 975
AflII CTTAAG 1 cut(s) 410
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 5 cut(s) 114, 292, 661, 958, 1162
AhlI ACTAGT 1 cut(s) 536
AjnI CCWGG 1 cut(s) 1027
AleI CACNNNNGTG 1 cut(s) 537
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
Alw21I GWGCWC 2 cut(s) 130, 1043
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 6 cut(s) 194, 413, 581, 962, 991, 1061
AlwNI CAGNNNCTG 1 cut(s) 1056
Ama87I CYCGRG 1 cut(s) 1042
ApeKI GCWGC 1 cut(s) 938
ApoI RAATTY 2 cut(s) 1144, 1162
AsiGI ACCGGT 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 218
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 1 cut(s) 1109
AsuHPI GGTGA 3 cut(s) 82, 517, 814
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 1042
AvaII GGWCC 1 cut(s) 1109
AvrII CCTAGG 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 130, 1043
BbvI GCAGC 1 cut(s) 950
BccI CCATC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 1029
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 521
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 7 cut(s) 219, 272, 537, 606, 707, 948, 1127
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 1035
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 939
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 1 cut(s) 940
BmcAI AGTACT 1 cut(s) 975
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 1 cut(s) 1109
BmeT110I CYCGRG 1 cut(s) 1042
BmgT120I GGNCC 1 cut(s) 1109
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 1 cut(s) 1029
BmsI GCATC 3 cut(s) 250, 643, 726
BmtI GCTAGC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpuEI CTTGAG 2 cut(s) 459, 1098
BsaJI CCNNGG 3 cut(s) 218, 501, 680
BsaWI WCCGGW 3 cut(s) 161, 183, 817
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 971
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 3 cut(s) 218, 501, 680
BseGI GGATG 2 cut(s) 214, 1090
BseMII CTCAG 4 cut(s) 66, 348, 575, 629
BseNI ACTGG 1 cut(s) 971
BseXI GCAGC 1 cut(s) 950
BshTI ACCGGT 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 130, 1043
BsiHKCI CYCGRG 1 cut(s) 1042
BsiSI CCGG 3 cut(s) 162, 184, 818
BslFI GGGAC 2 cut(s) 860, 881
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 2 cut(s) 860, 881
BsmI GAATGC 3 cut(s) 316, 656, 791
BsoBI CYCGRG 1 cut(s) 1042
Bsp1286I GDGCHC 2 cut(s) 130, 1043
Bsp143I GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
BspACI CCGC 2 cut(s) 206, 933
BspCNI CTCAG 4 cut(s) 65, 349, 574, 628
BspLI GGNNCC 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 6 cut(s) 194, 413, 581, 962, 991, 1061
BspQI GCTCTTC 2 cut(s) 282, 626
BspTI CTTAAG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 971
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 3 cut(s) 218, 501, 680
BssMI GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
BssT1I CCWWGG 2 cut(s) 218, 680
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 5 cut(s) 125, 802, 838, 872, 1052
Bst6I CTCTTC 4 cut(s) 38, 282, 393, 626
BstAFI CTTAAG 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 204, 273, 677
BstDEI CTNAG 9 cut(s) 52, 357, 372, 446, 561, 601, 615, 692, 1119
BstF5I GGATG 2 cut(s) 214, 1090
BstH2I RGCGCY 1 cut(s) 1035
BstHHI GCGC 1 cut(s) 1034
BstKTI GATC 8 cut(s) 189, 349, 421, 532, 589, 970, 999, 1069
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
BstMWI GCNNNNNNNGC 5 cut(s) 260, 311, 944, 1038, 1053
BstNI CCWGG 1 cut(s) 1029
BstSCI CCNGG 1 cut(s) 1027
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 950
BstX2I RGATCY 3 cut(s) 186, 996, 1066
BstYI RGATCY 3 cut(s) 186, 996, 1066
BtsCI GGATG 2 cut(s) 214, 1090
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 60, 624
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 204, 273, 677
CaiI CAGNNNCTG 1 cut(s) 1056
CfoI GCGC 1 cut(s) 1034
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 1109
Csp6I GTAC 2 cut(s) 689, 974
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 4 cut(s) 491, 754, 859, 982
CviQI GTAC 2 cut(s) 689, 974
DdeI CTNAG 9 cut(s) 52, 357, 372, 446, 561, 601, 615, 692, 1119
DpnI GATC 8 cut(s) 188, 348, 420, 531, 588, 969, 998, 1068
DpnII GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
DraIII CACNNNGTG 1 cut(s) 802
Eam1104I CTCTTC 4 cut(s) 38, 282, 393, 626
EarI CTCTTC 4 cut(s) 38, 282, 393, 626
Eco130I CCWWGG 2 cut(s) 218, 680
Eco47I GGWCC 1 cut(s) 1109
Eco57I CTGAAG 2 cut(s) 270, 801
Eco88I CYCGRG 1 cut(s) 1042
EcoRI GAATTC 1 cut(s) 1162
EcoRII CCWGG 1 cut(s) 1027
EcoT14I CCWWGG 2 cut(s) 218, 680
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 218, 680
FaeI CATG 4 cut(s) 494, 757, 862, 985
FaiI YATR 9 cut(s) 158, 470, 492, 755, 808, 860, 865, 905, 983
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 2 cut(s) 860, 881
FatI CATG 4 cut(s) 490, 753, 858, 981
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 939
FokI GGATG 2 cut(s) 201, 1097
Fsp4HI GCNGC 1 cut(s) 939
FspBI CTAG 7 cut(s) 219, 272, 537, 606, 707, 948, 1127
GlaI GCGC 1 cut(s) 1033
GluI GCNGC 1 cut(s) 939
HaeII RGCGCY 1 cut(s) 1035
HapII CCGG 3 cut(s) 162, 184, 818
HhaI GCGC 1 cut(s) 1034
Hin1II CATG 4 cut(s) 494, 757, 862, 985
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 6 cut(s) 223, 557, 567, 744, 1020, 1174
HpaII CCGG 3 cut(s) 162, 184, 818
HphI GGTGA 3 cut(s) 82, 517, 814
Hpy166II GTNNAC 6 cut(s) 508, 841, 875, 1010, 1062, 1093
Hpy188I TCNGA 6 cut(s) 286, 358, 564, 781, 910, 1078
Hpy188III TCNNGA 4 cut(s) 476, 958, 1000, 1151
Hpy8I GTNNAC 6 cut(s) 508, 841, 875, 1010, 1062, 1093
HpyAV CCTTC 3 cut(s) 71, 117, 758
HpyCH4III ACNGT 5 cut(s) 125, 802, 838, 872, 1052
HpyCH4IV ACGT 2 cut(s) 1006, 1012
HpyCH4V TGCA 5 cut(s) 263, 656, 717, 810, 1182
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 311, 944, 1038, 1053
HpyF3I CTNAG 9 cut(s) 52, 357, 372, 446, 561, 601, 615, 692, 1119
HpySE526I ACGT 2 cut(s) 1006, 1012
Hsp92II CATG 4 cut(s) 494, 757, 862, 985
HspAI GCGC 1 cut(s) 1032
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
LguI GCTCTTC 2 cut(s) 282, 626
LmnI GCTCC 2 cut(s) 5, 935
Lsp1109I GCAGC 1 cut(s) 950
LweI GCATC 3 cut(s) 250, 643, 726
MaeI CTAG 7 cut(s) 219, 272, 537, 606, 707, 948, 1127
MaeII ACGT 2 cut(s) 1006, 1012
MaeIII GTNAC 5 cut(s) 119, 539, 827, 1013, 1021
MalI GATC 8 cut(s) 188, 348, 420, 531, 588, 969, 998, 1068
MboI GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
MboII GAAGA 9 cut(s) 25, 102, 269, 380, 398, 613, 621, 712, 794
MflI RGATCY 3 cut(s) 186, 996, 1066
MhlI GDGCHC 2 cut(s) 130, 1043
MluCI AATT 7 cut(s) 114, 430, 520, 733, 953, 1144, 1162
MlyI GAGTC 1 cut(s) 1029
MnlI CCTC 6 cut(s) 59, 103, 261, 474, 511, 1122
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 2 cut(s) 411, 762
MslI CAYNNNNRTG 2 cut(s) 243, 537
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 3 cut(s) 162, 184, 818
MspR9I CCNGG 1 cut(s) 1029
Mva1269I GAATGC 3 cut(s) 316, 656, 791
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 5 cut(s) 260, 311, 944, 1038, 1053
NdeII GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 4 cut(s) 494, 757, 862, 985
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 3 cut(s) 119, 539, 1021
NsiI ATGCAT 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 537
PaeR7I CTCGAG 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 148
PciSI GCTCTTC 2 cut(s) 282, 626
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PctI GAATGC 3 cut(s) 316, 656, 791
PfeI GAWTC 5 cut(s) 223, 557, 567, 744, 1174
PflFI GACNNNGTC 1 cut(s) 983
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 1 cut(s) 940
PleI GAGTC 1 cut(s) 1028
PpsI GAGTC 1 cut(s) 1028
Psp6I CCWGG 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 1 cut(s) 888
PspPI GGNCC 1 cut(s) 1109
PspXI VCTCGAGB 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 1056
PsuI RGATCY 3 cut(s) 186, 996, 1066
PsyI GACNNNGTC 1 cut(s) 983
RsaI GTAC 2 cut(s) 690, 975
RsaNI GTAC 2 cut(s) 689, 974
RseI CAYNNNNRTG 2 cut(s) 243, 537
SapI GCTCTTC 2 cut(s) 282, 626
SaqAI TTAA 2 cut(s) 411, 762
SatI GCNGC 1 cut(s) 939
Sau3AI GATC 8 cut(s) 186, 346, 418, 529, 586, 967, 996, 1066
Sau96I GGNCC 1 cut(s) 1109
ScaI AGTACT 1 cut(s) 975
SchI GAGTC 1 cut(s) 1029
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 2 cut(s) 130, 1043
SfaNI GCATC 3 cut(s) 250, 643, 726
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 1042
SinI GGWCC 1 cut(s) 1109
SlaI CTCGAG 1 cut(s) 1042
SmiMI CAYNNNNRTG 2 cut(s) 243, 537
SmlI CTYRAG 4 cut(s) 410, 474, 1042, 1113
SmoI CTYRAG 4 cut(s) 410, 474, 1042, 1113
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 7 cut(s) 114, 430, 520, 733, 953, 1144, 1162
SsiI CCGC 2 cut(s) 206, 933
SspMI CTAG 7 cut(s) 219, 272, 537, 606, 707, 948, 1127
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 2 cut(s) 218, 680
TaaI ACNGT 5 cut(s) 125, 802, 838, 872, 1052
TaiI ACGT 2 cut(s) 1009, 1015
TaqI TCGA 5 cut(s) 915, 978, 987, 1043, 1172
TasI AATT 7 cut(s) 114, 430, 520, 733, 953, 1144, 1162
TatI WGTACW 2 cut(s) 688, 973
TfiI GAWTC 5 cut(s) 223, 557, 567, 744, 1174
Tru1I TTAA 2 cut(s) 411, 762
Tru9I TTAA 2 cut(s) 411, 762
TscAI CASTG 2 cut(s) 60, 631
TseFI GTSAC 3 cut(s) 119, 539, 1021
TseI GCWGC 1 cut(s) 938
Tsp45I GTSAC 3 cut(s) 119, 539, 1021
TspDTI ATGAA 1 cut(s) 1101
TspRI CASTG 2 cut(s) 60, 631
Tth111I GACNNNGTC 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 1109
XapI RAATTY 2 cut(s) 1144, 1162
XhoI CTCGAG 1 cut(s) 1042
XmaJI CCTAGG 1 cut(s) 218
XspI CTAG 7 cut(s) 219, 272, 537, 606, 707, 948, 1127
ZrmI AGTACT 1 cut(s) 975
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.