RLG00000006136

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016227
Physical Location & Seq
Reverse (-)
4703058 .. 4707264
4207 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006136

Sequence Viewer

Length: 1191 bp
ATGGGAGCAGAGAAGAAATGGCTTCTCACACTCTTCTCCGCCACATTGCTCTCTCTCCTCCTCCTCCTCTTCTCCTCCATCTCCGCCTTCACCTCCCCCAAATCGTTCCCCTCCATCGTCCAGCACGGCGCCCACTGCCCGCCGGCGTTCGCCTACTACATCTACGGCGGCCGCGGCGATCGGGCCCGGATCTTCCGGCTGCTGCTCGCCGTCTACCACCCGAGGAACCGGTACTTGCTGCATCTGACGGCGGAGGAGCCGGAGGACGAGCGGCGGCGGCTGGAGTCGGCGGTGAAGGCGGTGCCGGCGGTGAGGGCGTTTGGGAATGTGGATGTGGTGGGGAAGCCTGATCGGATCACGTACATGGGTTCGTCGAATTTGGCGACGACGTTGAGGGCGGCGGCGATTTTGTTGAAGGTGGATAGTGGGTGGGACTGGTTCATCACTTTGAGTGCTGTGGACTACCCACTTGTGACTCAGGACGACCTGTCTCATGTCTTCTCTTCTGTAAGACGGGATCTCAATTTCATTGACCACACCAGTGATCTTGGATGGAAAGAGTTGCATAGGATCCAGCCAATTATAGTTGATCCAAGTATCTACCTAGCCAGGAGGAGCCAAATTTTTCATGCCACAGAGAAGCGGAAAACACCTGATGCTTTTAAAATATTCACAGGTTCCCCATGGTTTGTCCTGAGCAGATCTTTTCTGGAATTTTGCATTCTTGGTTGGGATAATCTTCCCCGGACATTGCTCATGTACTTTACTAATGTGATTCTGTCGGAGGAAGGATATTTCCACTCTGTTATATGCAATTCACCAGAGTTTAAGAACACTACTGTGAACAGTGATTTAAGATACATGATTTGGGACACTCCCCCGAAAATGGAACCCCACTTCCTCAATACATCAGTTTATGATCAAATGGTTCAAAGTGGAGCTGCTTTTGGCCGACAATTCCAGAAGGACGACCCTGTGCTGGACATGGTTGATGAAAAGATCCTCAAGCGTGGGCGAAATCAAGCTGCCCCAGGTGCATGGTGCTCCGGCTGGAAGAGCTGGTGGATGGATCCTTGCTCTCAATGGGGGGATGCCAATATCTTGAAGCCTGGACCCCAAGCAAAGAAATTTGAAGAATCCATTACTAACCTTCTCGATGACTGGAGTGCACAATCAAATCAGTGTAAATGA

Protein Analysis

397

Amino Acids

45.18

Weight (kDa)

8.13

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 50 - 309 1.2e-66 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71070
fragaria_vesca FvH4_4g32220
malus_domestica MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica Prupe.1G322800_v2.0.a1
pyrus_communis pycom13g02580 pycom16g02570
rosa_chinensis RchiOBHm_Chr4g0440961
rosa_laevigata RLG00000006136
rosa_multiflora Rmu_sc0000424.1_g000027
rosa_roxburghii Rroxscaffold_5G00381820
rosa_rugosa Rorug04G0329700
rosa_samantha Rh4AG381500 Rh4DG388000
rosa_wichuraiana Rw4G032860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 301
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 174
AclWI GGATC 9 cut(s) 197, 362, 525, 565, 578, 584, 994, 1064, 1077
AcoI YGGCCR 2 cut(s) 169, 949
AcsI RAATTY 4 cut(s) 376, 621, 713, 1127
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 233, 362, 761
AfiI CCNNNNNNNGG 2 cut(s) 886, 979
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 4 cut(s) 415, 932, 1105, 1133
AhdI GACNNNNNGTC 1 cut(s) 487
AjnI CCWGG 3 cut(s) 608, 1030, 1108
AleI CACNNNNGTG 2 cut(s) 540, 839
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
AluBI AGCT 3 cut(s) 941, 1025, 1059
AluI AGCT 3 cut(s) 941, 1025, 1059
Alw21I GWGCWC 2 cut(s) 1046, 1171
Alw26I GTCTC 1 cut(s) 495
Alw44I GTGCAC 1 cut(s) 1167
AlwI GGATC 9 cut(s) 197, 362, 525, 565, 578, 584, 994, 1064, 1077
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 3 cut(s) 169, 183, 949
ApaI GGGCCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 1167
ApeKI GCWGC 5 cut(s) 199, 202, 238, 941, 1025
ApoI RAATTY 4 cut(s) 376, 621, 713, 1127
AsiGI ACCGGT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 183, 184, 1112
AsuC2I CCSGG 2 cut(s) 187, 745
AsuHPI GGTGA 4 cut(s) 82, 304, 322, 810
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 1112
BaeGI GKGCMC 2 cut(s) 187, 1171
BamHI GGATCC 2 cut(s) 570, 1069
BanI GGYRCC 2 cut(s) 128, 301
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 1046, 1171
BbvI GCAGC 5 cut(s) 186, 189, 225, 928, 1012
BccI CCATC 4 cut(s) 86, 122, 546, 1060
BceAI ACGGC 4 cut(s) 142, 181, 194, 264
BciT130I CCWGG 3 cut(s) 610, 1032, 1110
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 2 cut(s) 187, 745
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 1 cut(s) 605
BfoI RGCGCY 1 cut(s) 132
BglII AGATCT 1 cut(s) 701
Bme1390I CCNGG 5 cut(s) 187, 610, 745, 1032, 1110
Bme18I GGWCC 1 cut(s) 1112
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 183, 184, 1112
BmrFI CCNGG 5 cut(s) 187, 610, 745, 1032, 1110
BmsI GCATC 3 cut(s) 250, 646, 1081
BpiI GAAGAC 1 cut(s) 490
BpmI CTGGAG 2 cut(s) 302, 1183
Bpu10I CCTNAGC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 2 cut(s) 187, 745
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 5 cut(s) 172, 221, 683, 743, 1030
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 979
Bse118I RCCGGY 3 cut(s) 142, 228, 304
Bse1I ACTGG 3 cut(s) 440, 540, 1166
Bse3DI GCAATG 2 cut(s) 44, 749
BseBI CCWGG 3 cut(s) 610, 1032, 1110
BseDI CCNNGG 5 cut(s) 172, 221, 683, 743, 1030
BseGI GGATG 4 cut(s) 337, 557, 1071, 1096
BseLI CCNNNNNNNGG 2 cut(s) 886, 979
BseMI GCAATG 2 cut(s) 44, 749
BseMII CTCAG 2 cut(s) 491, 686
BseNI ACTGG 3 cut(s) 440, 540, 1166
BseRI GAGGAG 7 cut(s) 47, 50, 53, 56, 64, 269, 628
BseSI GKGCMC 2 cut(s) 187, 1171
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 5 cut(s) 186, 189, 225, 928, 1012
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 2 cut(s) 172, 181
BshFI GGCC 3 cut(s) 171, 185, 951
BshNI GGYRCC 2 cut(s) 128, 301
BshTI ACCGGT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 172, 181
BsiHKAI GWGCWC 2 cut(s) 1046, 1171
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 8 cut(s) 143, 187, 196, 229, 260, 305, 745, 1047
BslFI GGGAC 2 cut(s) 446, 884
BslI CCNNNNNNNGG 2 cut(s) 886, 979
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 446, 884
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 3 cut(s) 171, 185, 951
BsoBI CYCGRG 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 187, 1046, 1171
Bsp19I CCATGG 1 cut(s) 683
BspANI GGCC 3 cut(s) 171, 185, 951
BspCNI CTCAG 2 cut(s) 490, 687
BspFNI CGCG 1 cut(s) 174
BspPI GGATC 9 cut(s) 197, 362, 525, 565, 578, 584, 994, 1064, 1077
BspQI GCTCTTC 1 cut(s) 1049
BspT107I GGYRCC 2 cut(s) 128, 301
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 44, 749
BsrFI RCCGGY 3 cut(s) 142, 228, 304
BsrI ACTGG 3 cut(s) 440, 540, 1166
BssAI RCCGGY 3 cut(s) 142, 228, 304
BssECI CCNNGG 5 cut(s) 172, 221, 683, 743, 1030
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 3 cut(s) 610, 1032, 1110
Bst4CI ACNGT 2 cut(s) 841, 848
Bst6I CTCTTC 4 cut(s) 38, 74, 508, 1049
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 4 cut(s) 140, 144, 207, 306
BstDEI CTNAG 2 cut(s) 477, 695
BstDSI CCRYGG 2 cut(s) 172, 683
BstF5I GGATG 4 cut(s) 337, 557, 1071, 1096
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 495
BstMCI CGRYCG 2 cut(s) 172, 181
BstMWI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
BstNI CCWGG 3 cut(s) 610, 1032, 1110
BstSCI CCNGG 5 cut(s) 185, 608, 743, 1030, 1108
BstSLI GKGCMC 2 cut(s) 187, 1171
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 5 cut(s) 186, 189, 225, 928, 1012
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 3 cut(s) 171, 185, 951
BtgI CCRYGG 2 cut(s) 172, 683
BtsCI GGATG 4 cut(s) 337, 557, 1071, 1096
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 4 cut(s) 133, 547, 853, 1187
Cac8I GCNNGC 4 cut(s) 140, 144, 207, 306
CciNI GCGGCCGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 3 cut(s) 142, 228, 304
Cfr13I GGNCC 3 cut(s) 183, 184, 1112
Cfr42I CCGCGG 1 cut(s) 175
Csp6I GTAC 3 cut(s) 232, 361, 760
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 8 cut(s) 364, 494, 629, 684, 757, 862, 985, 1038
CviQI GTAC 3 cut(s) 232, 361, 760
DdeI CTNAG 2 cut(s) 477, 695
DinI GGCGCC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 169, 949
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 4 cut(s) 38, 74, 508, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 4 cut(s) 38, 74, 508, 1049
EciI GGCGGA 3 cut(s) 28, 73, 266
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 683
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 1112
Eco52I CGGCCG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 608, 1030, 1108
EcoT14I CCWWGG 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 683
FaeI CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
FaqI GGGAC 2 cut(s) 446, 884
FatI CATG 8 cut(s) 363, 493, 628, 683, 756, 861, 984, 1037
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 1 cut(s) 213
FokI GGATG 4 cut(s) 344, 564, 1078, 1103
FriOI GRGCYC 1 cut(s) 187
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 130
GsuI CTGGAG 2 cut(s) 302, 1183
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 3 cut(s) 171, 185, 951
HapII CCGG 8 cut(s) 143, 187, 196, 229, 260, 305, 745, 1047
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 4 cut(s) 284, 475, 775, 1136
HpaII CCGG 8 cut(s) 143, 187, 196, 229, 260, 305, 745, 1047
HphI GGTGA 4 cut(s) 82, 304, 322, 810
Hpy166II GTNNAC 4 cut(s) 214, 460, 844, 1169
Hpy188I TCNGA 3 cut(s) 246, 354, 784
Hpy188III TCNNGA 6 cut(s) 479, 694, 710, 961, 1102, 1154
Hpy8I GTNNAC 4 cut(s) 214, 460, 844, 1169
Hpy99I CGWCG 3 cut(s) 376, 388, 391
HpyAV CCTTC 6 cut(s) 97, 289, 409, 782, 958, 1160
HpyCH4III ACNGT 2 cut(s) 841, 848
HpyCH4IV ACGT 2 cut(s) 359, 389
HpyCH4V TGCA 6 cut(s) 241, 565, 720, 813, 1037, 1169
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
HpyF3I CTNAG 2 cut(s) 477, 695
HpySE526I ACGT 2 cut(s) 359, 389
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
KroI GCCGGC 2 cut(s) 142, 304
KroNI GCCGGC 2 cut(s) 144, 306
Ksp22I TGATCA 1 cut(s) 919
KspI CCGCGG 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 1049
LmnI GCTCC 5 cut(s) 5, 256, 615, 938, 1049
Lsp1109I GCAGC 5 cut(s) 186, 189, 225, 928, 1012
LweI GCATC 3 cut(s) 250, 646, 1081
MaeI CTAG 1 cut(s) 605
MaeII ACGT 2 cut(s) 359, 389
MaeIII GTNAC 1 cut(s) 472
MbiI CCGCTC 1 cut(s) 271
MboII GAAGA 9 cut(s) 25, 25, 61, 184, 490, 495, 731, 1066, 1145
MflI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
MhlI GDGCHC 3 cut(s) 187, 1046, 1171
MluCI AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 293, 469
MmeI TCCRAC 1 cut(s) 762
MreI CGCCGGCG 1 cut(s) 142
MroNI GCCGGC 2 cut(s) 142, 304
MseI TTAA 3 cut(s) 663, 828, 854
MslI CAYNNNNRTG 3 cut(s) 362, 540, 839
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 8 cut(s) 143, 187, 196, 229, 260, 305, 745, 1047
MspR9I CCNGG 5 cut(s) 187, 610, 745, 1032, 1110
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 3 cut(s) 610, 1032, 1110
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
NaeI GCCGGC 2 cut(s) 144, 306
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 2 cut(s) 187, 745
NcoI CCATGG 1 cut(s) 683
NgoMIV GCCGGC 2 cut(s) 142, 304
NlaIII CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
NmuCI GTSAC 1 cut(s) 472
NotI GCGGCCGC 1 cut(s) 169
OliI CACNNNNGTG 2 cut(s) 540, 839
PciSI GCTCTTC 1 cut(s) 1049
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 720
PdiI GCCGGC 2 cut(s) 144, 306
PfeI GAWTC 2 cut(s) 775, 1136
PinAI ACCGGT 1 cut(s) 228
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 2 cut(s) 292, 469
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 292, 469
Ppu21I YACGTR 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 608, 1030, 1108
PspGI CCWGG 3 cut(s) 608, 1030, 1108
PspOMI GGGCCC 1 cut(s) 183
PspPI GGNCC 3 cut(s) 183, 184, 1112
PsuI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 3 cut(s) 233, 362, 761
RsaNI GTAC 3 cut(s) 232, 361, 760
RseI CAYNNNNRTG 3 cut(s) 362, 540, 839
SacII CCGCGG 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 1049
SaqAI TTAA 3 cut(s) 663, 828, 854
Sau96I GGNCC 3 cut(s) 183, 184, 1112
SchI GAGTC 2 cut(s) 293, 469
ScrFI CCNGG 5 cut(s) 187, 610, 745, 1032, 1110
SduI GDGCHC 3 cut(s) 187, 1046, 1171
SfaNI GCATC 3 cut(s) 250, 646, 1081
SfoI GGCGCC 1 cut(s) 130
Sfr303I CCGCGG 1 cut(s) 175
SgrAI CRCCGGYG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 175
SinI GGWCC 1 cut(s) 1112
SmiMI CAYNNNNRTG 3 cut(s) 362, 540, 839
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
SspDI GGCGCC 1 cut(s) 128
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 5 cut(s) 185, 608, 743, 1030, 1108
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 2 cut(s) 841, 848
TaiI ACGT 2 cut(s) 362, 392
TaqI TCGA 2 cut(s) 374, 1155
TasI AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
TatI WGTACW 1 cut(s) 759
TauI GCSGC 8 cut(s) 171, 174, 177, 274, 277, 280, 401, 404
TfiI GAWTC 2 cut(s) 775, 1136
Tru1I TTAA 3 cut(s) 663, 828, 854
Tru9I TTAA 3 cut(s) 663, 828, 854
TscAI CASTG 4 cut(s) 140, 547, 853, 1187
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 5 cut(s) 199, 202, 238, 941, 1025
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 4 cut(s) 430, 517, 617, 1008
TspRI CASTG 4 cut(s) 140, 547, 853, 1187
VneI GTGCAC 1 cut(s) 1167
VpaK11BI GGWCC 1 cut(s) 1112
XapI RAATTY 4 cut(s) 376, 621, 713, 1127
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.