Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016227

Physical Location & Seq

Genomic Coordinates Forward (+)

61672106 .. 61676112

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGTTCGTCGAATTTGGCGACGACGTTGAGGGCGGCGGCGATTTTGTTGAAGGTGGATAGTGGGTGGGACTGGTTCATCACTTTGAGTGCTGTGGACTACCCACTTGTGACTCAGGACGACCTGTCTCATGTCTTCTCTTCTGTAAGACGGGATCTCAATTTCATTGACCACACCAGTGACCTTGGATGGAAAGAGTTGCATAGGATCCAGCCAATTATAGTTGATCCAAGTATCTACCTAGCCAGGAGGAGCCAAATTTTTCATGCTACGGAGAAGCGGAAAACACCTGATGCTTTTAAAATATTCACAGGTTCCCCATGGTTTGTCCTGAGCAGATCTTTTCTGGAATTTTGCATTCTTGGTTGGGATAATCTTCCCCGGACGTTGCTCATGTACTTTACGAATGTGATTCTGTCGGAGGAAGGATATTTCCACTCTGTTATATGCAATTCACCAGAATTTAAGAACACCACTGTGAACAGTGATTTAAGATACATGATTTGGGACACTCCCCCGAAAATGGAACCCCACTTCCTCAATACATCAGTTTATGATCAAATGGTTCAAAGTGGAGCTGCTTTTGGCCGACAATTTCAGAAGGATGACCCTGTGCTGGACATGGTTGATGAAAAGATTCTCAAGCGCGGGCGAAAGCGAGCTGCCCCAGGCGCATGGTGCTCCGGCTGGAAGAGCTGGTGGATGGATCCCTTGCTCTCAATGGGGGGATGCCAATATCTTGAAGCCTGGACCCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0015012 GO:0019538 GO:0030166 GO:0030201 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0050650 GO:0050654 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

253

Amino Acids

29.13

Weight (kDa)

6.3

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	2 - 188	7.4e-51	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71070
fragaria_vesca	FvH4_4g32220
malus_domestica	MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica	Prupe.1G322800_v2.0.a1
pyrus_communis	pycom13g02580 pycom16g02570
rosa_chinensis	RchiOBHm_Chr4g0440961
rosa_laevigata	RLG00000006136
rosa_multiflora	Rmu_sc0000424.1_g000027
rosa_roxburghii	Rroxscaffold_5G00381820
rosa_rugosa	Rorug04G0329700
rosa_samantha	Rh4AG381500 Rh4DG388000
rosa_wichuraiana	Rw4G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AciI	CCGC	4 cut(s)	35, 38, 280, 648
AclWI	GGATC	6 cut(s)	162, 202, 215, 221, 701, 714
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	4 cut(s)	13, 258, 350, 461
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	523, 616
AgsI	TTSAA	3 cut(s)	52, 569, 743
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	3 cut(s)	245, 667, 746
AleI	CACNNNNGTG	2 cut(s)	177, 476
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	578, 662, 696, 759
AluI	AGCT	4 cut(s)	578, 662, 696, 759
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	6 cut(s)	162, 202, 215, 221, 701, 714
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	578, 662
ApoI	RAATTY	4 cut(s)	13, 258, 350, 461
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	648, 674
AspS9I	GGNCC	1 cut(s)	750
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	750
BamHI	GGATCC	2 cut(s)	207, 706
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	565, 649
BccI	CCATC	2 cut(s)	183, 697
BciT130I	CCWGG	3 cut(s)	247, 669, 748
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	4 cut(s)	36, 39, 579, 663
BlsI	GCNGC	4 cut(s)	37, 40, 580, 664
Bme1390I	CCNGG	4 cut(s)	247, 382, 669, 748
Bme18I	GGWCC	1 cut(s)	750
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	750
BmiI	GGNNCC	6 cut(s)	209, 254, 316, 528, 708, 752
BmrFI	CCNGG	4 cut(s)	247, 382, 669, 748
BmsI	GCATC	2 cut(s)	283, 719
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	382
BsaJI	CCNNGG	4 cut(s)	184, 320, 380, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 616
Bse1I	ACTGG	2 cut(s)	77, 177
BseBI	CCWGG	3 cut(s)	247, 669, 748
BseDI	CCNNGG	4 cut(s)	184, 320, 380, 667
BseGI	GGATG	4 cut(s)	194, 610, 708, 734
BseLI	CCNNNNNNNGG	2 cut(s)	523, 616
BseMII	CTCAG	2 cut(s)	128, 323
BseNI	ACTGG	2 cut(s)	77, 177
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	565, 649
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	683
BsiSI	CCGG	2 cut(s)	382, 684
BslFI	GGGAC	2 cut(s)	83, 521
BslI	CCNNNNNNNGG	2 cut(s)	523, 616
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	83, 521
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	4 cut(s)	35, 38, 280, 648
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	127, 324
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	6 cut(s)	209, 254, 316, 528, 708, 752
BspPI	GGATC	6 cut(s)	162, 202, 215, 221, 701, 714
BspQI	GCTCTTC	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	77, 177
BssECI	CCNNGG	4 cut(s)	184, 320, 380, 667
BssMI	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
BssT1I	CCWWGG	2 cut(s)	184, 320
Bst2UI	CCWGG	3 cut(s)	247, 669, 748
Bst4CI	ACNGT	2 cut(s)	478, 485
Bst6I	CTCTTC	2 cut(s)	145, 686
BstC8I	GCNNGC	2 cut(s)	650, 660
BstDEI	CTNAG	2 cut(s)	114, 332
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	194, 610, 708, 734
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	648, 674
BstKTI	GATC	6 cut(s)	157, 210, 229, 341, 559, 709
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	671, 678, 693
BstNI	CCWGG	3 cut(s)	247, 669, 748
BstSCI	CCNGG	4 cut(s)	245, 380, 667, 746
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	565, 649
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	4 cut(s)	154, 207, 338, 706
BstXI	CCANNNNNNTGG	1 cut(s)	675
BstYI	RGATCY	4 cut(s)	154, 207, 338, 706
BsuRI	GGCC	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	194, 610, 708, 734
BtsIMutI	CAGTG	3 cut(s)	184, 474, 490
Cac8I	GCNNGC	2 cut(s)	650, 660
CfoI	GCGC	2 cut(s)	648, 674
Cfr13I	GGNCC	1 cut(s)	750
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	7 cut(s)	131, 266, 321, 394, 499, 622, 675
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	114, 332
DpnI	GATC	6 cut(s)	156, 209, 228, 340, 558, 708
DpnII	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
DraI	TTTAAA	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	145, 686
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	2 cut(s)	145, 686
Eco130I	CCWWGG	2 cut(s)	184, 320
Eco47I	GGWCC	1 cut(s)	750
EcoRII	CCWGG	3 cut(s)	245, 667, 746
EcoT14I	CCWWGG	2 cut(s)	184, 320
ErhI	CCWWGG	2 cut(s)	184, 320
FaeI	CATG	7 cut(s)	134, 269, 324, 397, 502, 625, 678
FaqI	GGGAC	2 cut(s)	83, 521
FatI	CATG	7 cut(s)	130, 265, 320, 393, 498, 621, 674
FauI	CCCGC	1 cut(s)	641
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	36, 39, 579, 663
FokI	GGATG	4 cut(s)	201, 617, 715, 741
Fsp4HI	GCNGC	4 cut(s)	36, 39, 579, 663
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	2 cut(s)	647, 673
GluI	GCNGC	4 cut(s)	36, 39, 579, 663
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	2 cut(s)	382, 684
HhaI	GCGC	2 cut(s)	648, 674
Hin1II	CATG	7 cut(s)	134, 269, 324, 397, 502, 625, 678
Hin6I	GCGC	2 cut(s)	646, 672
HinP1I	GCGC	2 cut(s)	646, 672
HinfI	GANTC	3 cut(s)	112, 412, 637
HpaII	CCGG	2 cut(s)	382, 684
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	2 cut(s)	97, 481
Hpy188I	TCNGA	2 cut(s)	421, 600
Hpy188III	TCNNGA	4 cut(s)	116, 331, 347, 740
Hpy8I	GTNNAC	2 cut(s)	97, 481
Hpy99I	CGWCG	3 cut(s)	13, 25, 28
HpyAV	CCTTC	3 cut(s)	46, 419, 595
HpyCH4III	ACNGT	2 cut(s)	478, 485
HpyCH4IV	ACGT	2 cut(s)	26, 386
HpyCH4V	TGCA	3 cut(s)	202, 357, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	671, 678, 693
HpyF3I	CTNAG	2 cut(s)	114, 332
HpySE526I	ACGT	2 cut(s)	26, 386
Hsp92II	CATG	7 cut(s)	134, 269, 324, 397, 502, 625, 678
HspAI	GCGC	2 cut(s)	646, 672
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	3 cut(s)	252, 575, 686
Lsp1109I	GCAGC	2 cut(s)	565, 649
LweI	GCATC	2 cut(s)	283, 719
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	26, 386
MaeIII	GTNAC	2 cut(s)	109, 179
MalI	GATC	6 cut(s)	156, 209, 228, 340, 558, 708
MboI	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
MboII	GAAGA	4 cut(s)	127, 132, 368, 703
MflI	RGATCY	4 cut(s)	154, 207, 338, 706
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	8 cut(s)	13, 160, 216, 258, 350, 451, 461, 593
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	4 cut(s)	24, 243, 415, 548
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	3 cut(s)	300, 465, 491
MslI	CAYNNNNRTG	2 cut(s)	177, 476
MspI	CCGG	2 cut(s)	382, 684
MspR9I	CCNGG	4 cut(s)	247, 382, 669, 748
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	3 cut(s)	247, 669, 748
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	671, 678, 693
NciI	CCSGG	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
NlaIII	CATG	7 cut(s)	134, 269, 324, 397, 502, 625, 678
NlaIV	GGNNCC	6 cut(s)	209, 254, 316, 528, 708, 752
NmuCI	GTSAC	2 cut(s)	109, 179
OliI	CACNNNNGTG	2 cut(s)	177, 476
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	412, 637
PkrI	GCNGC	4 cut(s)	37, 40, 580, 664
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	3 cut(s)	245, 667, 746
PspGI	CCWGG	3 cut(s)	245, 667, 746
PspN4I	GGNNCC	6 cut(s)	209, 254, 316, 528, 708, 752
PspPI	GGNCC	1 cut(s)	750
PsuI	RGATCY	4 cut(s)	154, 207, 338, 706
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	177, 476
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	300, 465, 491
SatI	GCNGC	4 cut(s)	36, 39, 579, 663
Sau3AI	GATC	6 cut(s)	154, 207, 226, 338, 556, 706
Sau96I	GGNCC	1 cut(s)	750
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	4 cut(s)	247, 382, 669, 748
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	2 cut(s)	283, 719
SinI	GGWCC	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	177, 476
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	8 cut(s)	13, 160, 216, 258, 350, 451, 461, 593
SsiI	CCGC	4 cut(s)	35, 38, 280, 648
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	4 cut(s)	245, 380, 667, 746
StyI	CCWWGG	2 cut(s)	184, 320
TaaI	ACNGT	2 cut(s)	478, 485
TaiI	ACGT	2 cut(s)	29, 389
TaqI	TCGA	1 cut(s)	11
TasI	AATT	8 cut(s)	13, 160, 216, 258, 350, 451, 461, 593
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	2 cut(s)	412, 637
Tru1I	TTAA	3 cut(s)	300, 465, 491
Tru9I	TTAA	3 cut(s)	300, 465, 491
TscAI	CASTG	3 cut(s)	184, 481, 490
TseFI	GTSAC	2 cut(s)	109, 179
TseI	GCWGC	2 cut(s)	578, 662
Tsp45I	GTSAC	2 cut(s)	109, 179
TspDTI	ATGAA	4 cut(s)	67, 154, 254, 645
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	184, 481, 490
VpaK11BI	GGWCC	1 cut(s)	750
XapI	RAATTY	4 cut(s)	13, 258, 350, 461
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.