Rmu_sc0000424.1_g000027

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
OG0016227
Physical Location & Seq
Forward (+)
113053 .. 116571
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000424.1_g000027.1.cds

Sequence Viewer

Length: 1191 bp
atgggagcagagaagaaatggcttctcacactcttctccgccacattgctctctctcctcctcctcctcttctcctccatctccgccttcacctcccccaaaccgttcccctccatcgtccagcacggcgcccactgcccgccggcgttcgcctactacatctacggcggccgcggcgatcgggcgcggatcctccggctgctgctcgccgtctaccacccgaggaaccggtacctgctgcatctgacggccgaggagtcggaggacgagcggcggcggctggcgtcggcggtgaaggcggtgccggcggtcagggcgtttgggaatgtggatgtggtggggaagcctgatcggatcacgtacatgggttcgtcgaatttggcgacgacgttgagggcggcggcgattttgttgaaggtggatagtgggtgggactggttcatcactttgagtgctgtggactacccacttgtgactcaggacgacctgtctcatgtcttctcttctgtaagacgggatctcaatttcattgaccacaccagtgaccttggatggaaagagttgcataggatccagccaattatagttgatccaagtatctacctagccaggaggagccaaatttttcatgctacagagaagcggaaaacacctgatgcttttaaaatattcacaggttccccatggtttgtcctgagcagatcttttctggaattttgcattcttggttgggataatcttccccggacgttgctcatgtactttacgaatgtgattctatcggaggaaggatatttccactctgttatatgcaattcaccagagtttaagaacactaccgtgaacagtgatttaagatacatgatttgggacactcccccgaaaatggaaccccacttcctcaatacatcagtttatgatcaaatggttcaaagtggagctgcttttggccgacaattccagaaggacgaccctgtgctggacatggttgatgaaaagatcctcaagcgcgggagaaatctagctgccccaggtgcatggtgctccggctggaagagctggtggatggatccttgctctcaatggggggatgccaatatcttgaagcctggaccccaagcaaagaaatttgaagaatccattactaaccttcttgatgactggagctcacaatcaaatcagtgtaaatga

Protein Analysis

396

Amino Acids

45.09

Weight (kDa)

8.42

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71070
fragaria_vesca FvH4_4g32220
malus_domestica MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica Prupe.1G322800_v2.0.a1
pyrus_communis pycom13g02580 pycom16g02570
rosa_chinensis RchiOBHm_Chr4g0440961
rosa_laevigata RLG00000006136
rosa_multiflora Rmu_sc0000424.1_g000027
rosa_roxburghii Rroxscaffold_5G00381820
rosa_rugosa Rorug04G0329700
rosa_samantha Rh4AG381500 Rh4DG388000
rosa_wichuraiana Rw4G032860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 3 cut(s) 128, 231, 301
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 213
AccII CGCG 3 cut(s) 174, 187, 1011
AcoI YGGCCR 3 cut(s) 169, 249, 949
AcsI RAATTY 4 cut(s) 376, 621, 713, 1127
AcyI GRCGYC 2 cut(s) 129, 284
AfaI GTAC 3 cut(s) 233, 362, 761
AfiI CCNNNNNNNGG 2 cut(s) 886, 979
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 4 cut(s) 415, 932, 1105, 1133
AhdI GACNNNNNGTC 1 cut(s) 487
AjnI CCWGG 3 cut(s) 608, 1030, 1108
AleI CACNNNNGTG 2 cut(s) 540, 839
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
AluBI AGCT 4 cut(s) 941, 1025, 1059, 1167
AluI AGCT 4 cut(s) 941, 1025, 1059, 1167
Alw21I GWGCWC 2 cut(s) 1046, 1169
Alw26I GTCTC 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 3 cut(s) 169, 249, 949
ApeKI GCWGC 5 cut(s) 199, 202, 238, 941, 1025
ApoI RAATTY 4 cut(s) 376, 621, 713, 1127
AsiGI ACCGGT 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 3 cut(s) 131, 187, 1011
AspS9I GGNCC 1 cut(s) 1112
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 82, 304, 810
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 1112
BamHI GGATCC 3 cut(s) 189, 570, 1069
BanI GGYRCC 3 cut(s) 128, 231, 301
BanII GRGCYC 1 cut(s) 1169
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 1046, 1169
BbvI GCAGC 5 cut(s) 186, 189, 225, 928, 1012
BccI CCATC 4 cut(s) 86, 122, 546, 1060
BceAI ACGGC 4 cut(s) 142, 181, 194, 264
BciT130I CCWGG 3 cut(s) 610, 1032, 1110
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 605, 1022
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 243
BglII AGATCT 1 cut(s) 701
Bme1390I CCNGG 4 cut(s) 610, 745, 1032, 1110
Bme18I GGWCC 1 cut(s) 1112
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 1112
BmrFI CCNGG 4 cut(s) 610, 745, 1032, 1110
BmsI GCATC 3 cut(s) 250, 646, 1081
BpiI GAAGAC 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 1183
Bpu10I CCTNAGC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 2 cut(s) 129, 284
BsaJI CCNNGG 7 cut(s) 172, 221, 252, 547, 683, 743, 1030
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 979
Bse118I RCCGGY 3 cut(s) 142, 228, 304
Bse1I ACTGG 3 cut(s) 440, 540, 1166
Bse3DI GCAATG 1 cut(s) 44
BseBI CCWGG 3 cut(s) 610, 1032, 1110
BseDI CCNNGG 7 cut(s) 172, 221, 252, 547, 683, 743, 1030
BseGI GGATG 4 cut(s) 337, 557, 1071, 1096
BseLI CCNNNNNNNGG 2 cut(s) 886, 979
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 491, 686
BseNI ACTGG 3 cut(s) 440, 540, 1166
BseRI GAGGAG 7 cut(s) 47, 50, 53, 56, 64, 269, 628
BseX3I CGGCCG 2 cut(s) 169, 249
BseXI GCAGC 5 cut(s) 186, 189, 225, 928, 1012
Bsh1236I CGCG 3 cut(s) 174, 187, 1011
Bsh1285I CGRYCG 3 cut(s) 172, 181, 252
BshFI GGCC 3 cut(s) 171, 251, 951
BshNI GGYRCC 3 cut(s) 128, 231, 301
BshTI ACCGGT 1 cut(s) 228
BsiEI CGRYCG 3 cut(s) 172, 181, 252
BsiHKAI GWGCWC 2 cut(s) 1046, 1169
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 6 cut(s) 143, 196, 229, 305, 745, 1047
BslFI GGGAC 2 cut(s) 446, 884
BslI CCNNNNNNNGG 2 cut(s) 886, 979
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 446, 884
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 3 cut(s) 171, 251, 951
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 1046, 1169
Bsp19I CCATGG 1 cut(s) 683
BspANI GGCC 3 cut(s) 171, 251, 951
BspCNI CTCAG 2 cut(s) 490, 687
BspFNI CGCG 3 cut(s) 174, 187, 1011
BspMI ACCTGC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 1049
BspT107I GGYRCC 3 cut(s) 128, 231, 301
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 3 cut(s) 142, 228, 304
BsrI ACTGG 3 cut(s) 440, 540, 1166
BssAI RCCGGY 3 cut(s) 142, 228, 304
BssECI CCNNGG 7 cut(s) 172, 221, 252, 547, 683, 743, 1030
BssNI GRCGYC 2 cut(s) 129, 284
BssT1I CCWWGG 2 cut(s) 547, 683
Bst2UI CCWGG 3 cut(s) 610, 1032, 1110
Bst4CI ACNGT 3 cut(s) 105, 841, 848
Bst6I CTCTTC 4 cut(s) 38, 74, 508, 1049
BstACI GRCGYC 2 cut(s) 129, 284
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 5 cut(s) 140, 144, 207, 282, 306
BstDEI CTNAG 2 cut(s) 477, 695
BstDSI CCRYGG 2 cut(s) 172, 683
BstF5I GGATG 4 cut(s) 337, 557, 1071, 1096
BstFNI CGCG 3 cut(s) 174, 187, 1011
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 3 cut(s) 131, 187, 1011
BstMAI GTCTC 1 cut(s) 495
BstMCI CGRYCG 3 cut(s) 172, 181, 252
BstMWI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
BstNI CCWGG 3 cut(s) 610, 1032, 1110
BstSCI CCNGG 4 cut(s) 608, 743, 1030, 1108
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 3 cut(s) 174, 187, 1011
BstV1I GCAGC 5 cut(s) 186, 189, 225, 928, 1012
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
BstZI CGGCCG 2 cut(s) 169, 249
BsuRI GGCC 3 cut(s) 171, 251, 951
BtgI CCRYGG 2 cut(s) 172, 683
BtsCI GGATG 4 cut(s) 337, 557, 1071, 1096
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 4 cut(s) 133, 547, 853, 1187
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 5 cut(s) 140, 144, 207, 282, 306
CciNI GCGGCCGC 1 cut(s) 169
CfoI GCGC 3 cut(s) 131, 187, 1011
Cfr10I RCCGGY 3 cut(s) 142, 228, 304
Cfr13I GGNCC 1 cut(s) 1112
Cfr42I CCGCGG 1 cut(s) 175
CseI GACGC 1 cut(s) 273
Csp6I GTAC 3 cut(s) 232, 361, 760
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 8 cut(s) 364, 494, 629, 684, 757, 862, 985, 1038
CviQI GTAC 3 cut(s) 232, 361, 760
DdeI CTNAG 2 cut(s) 477, 695
DinI GGCGCC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 3 cut(s) 169, 249, 949
EagI CGGCCG 2 cut(s) 169, 249
Eam1104I CTCTTC 4 cut(s) 38, 74, 508, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 4 cut(s) 38, 74, 508, 1049
EciI GGCGGA 2 cut(s) 28, 73
Ecl136II GAGCTC 1 cut(s) 1167
EclXI CGGCCG 2 cut(s) 169, 249
Eco130I CCWWGG 2 cut(s) 547, 683
Eco24I GRGCYC 1 cut(s) 1169
Eco47I GGWCC 1 cut(s) 1112
Eco52I CGGCCG 2 cut(s) 169, 249
Eco53kI GAGCTC 1 cut(s) 1167
Eco88I CYCGRG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 1167
EcoRII CCWGG 3 cut(s) 608, 1030, 1108
EcoT14I CCWWGG 2 cut(s) 547, 683
EcoT38I GRGCYC 1 cut(s) 1169
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 547, 683
FaeI CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
FaqI GGGAC 2 cut(s) 446, 884
FatI CATG 8 cut(s) 363, 493, 628, 683, 756, 861, 984, 1037
FauI CCCGC 2 cut(s) 147, 1004
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 1 cut(s) 213
FokI GGATG 4 cut(s) 344, 564, 1078, 1103
FriOI GRGCYC 1 cut(s) 1169
FspBI CTAG 2 cut(s) 605, 1022
GlaI GCGC 3 cut(s) 130, 186, 1010
GsuI CTGGAG 1 cut(s) 1183
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 3 cut(s) 171, 251, 951
HapII CCGG 6 cut(s) 143, 196, 229, 305, 745, 1047
HgaI GACGC 1 cut(s) 273
HhaI GCGC 3 cut(s) 131, 187, 1011
Hin1I GRCGYC 2 cut(s) 129, 284
Hin1II CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
Hin6I GCGC 3 cut(s) 129, 185, 1009
HinP1I GCGC 3 cut(s) 129, 185, 1009
HinfI GANTC 4 cut(s) 257, 475, 775, 1136
HpaII CCGG 6 cut(s) 143, 196, 229, 305, 745, 1047
HphI GGTGA 3 cut(s) 82, 304, 810
Hpy166II GTNNAC 3 cut(s) 214, 460, 844
Hpy188I TCNGA 4 cut(s) 246, 262, 354, 784
Hpy188III TCNNGA 6 cut(s) 479, 694, 710, 961, 1102, 1154
Hpy8I GTNNAC 3 cut(s) 214, 460, 844
Hpy99I CGWCG 4 cut(s) 289, 376, 388, 391
HpyAV CCTTC 6 cut(s) 97, 289, 409, 782, 958, 1160
HpyCH4III ACNGT 3 cut(s) 105, 841, 848
HpyCH4IV ACGT 3 cut(s) 359, 389, 749
HpyCH4V TGCA 5 cut(s) 241, 565, 720, 813, 1037
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
HpyF3I CTNAG 2 cut(s) 477, 695
HpySE526I ACGT 3 cut(s) 359, 389, 749
Hsp92I GRCGYC 2 cut(s) 129, 284
Hsp92II CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
HspAI GCGC 3 cut(s) 129, 185, 1009
KasI GGCGCC 1 cut(s) 128
KpnI GGTACC 1 cut(s) 235
KroI GCCGGC 2 cut(s) 142, 304
KroNI GCCGGC 2 cut(s) 144, 306
Ksp22I TGATCA 1 cut(s) 919
KspI CCGCGG 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 1049
LmnI GCTCC 5 cut(s) 5, 615, 938, 1049, 1164
Lsp1109I GCAGC 5 cut(s) 186, 189, 225, 928, 1012
LweI GCATC 3 cut(s) 250, 646, 1081
MaeI CTAG 2 cut(s) 605, 1022
MaeII ACGT 3 cut(s) 359, 389, 749
MaeIII GTNAC 2 cut(s) 472, 542
MbiI CCGCTC 1 cut(s) 271
MboII GAAGA 8 cut(s) 25, 25, 61, 490, 495, 731, 1066, 1145
MflI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
MhlI GDGCHC 2 cut(s) 1046, 1169
MluCI AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 266, 469
MmeI TCCRAC 1 cut(s) 240
MreI CGCCGGCG 1 cut(s) 142
MroNI GCCGGC 2 cut(s) 142, 304
MseI TTAA 3 cut(s) 663, 828, 854
MslI CAYNNNNRTG 3 cut(s) 362, 540, 839
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 6 cut(s) 143, 196, 229, 305, 745, 1047
MspR9I CCNGG 4 cut(s) 610, 745, 1032, 1110
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 3 cut(s) 610, 1032, 1110
MvnI CGCG 3 cut(s) 174, 187, 1011
MwoI GCNNNNNNNGC 8 cut(s) 135, 174, 277, 296, 305, 314, 1034, 1056
NaeI GCCGGC 2 cut(s) 144, 306
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 745
NcoI CCATGG 1 cut(s) 683
NgoMIV GCCGGC 2 cut(s) 142, 304
NlaIII CATG 8 cut(s) 367, 497, 632, 687, 760, 865, 988, 1041
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 472, 542
NotI GCGGCCGC 1 cut(s) 169
OliI CACNNNNGTG 2 cut(s) 540, 839
PciSI GCTCTTC 1 cut(s) 1049
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 720
PdiI GCCGGC 2 cut(s) 144, 306
PfeI GAWTC 2 cut(s) 775, 1136
PinAI ACCGGT 1 cut(s) 228
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 2 cut(s) 265, 469
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 265, 469
Ppu21I YACGTR 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 1169
Psp6I CCWGG 3 cut(s) 608, 1030, 1108
PspGI CCWGG 3 cut(s) 608, 1030, 1108
PspPI GGNCC 1 cut(s) 1112
PsuI RGATCY 6 cut(s) 189, 517, 570, 701, 999, 1069
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 3 cut(s) 233, 362, 761
RsaNI GTAC 3 cut(s) 232, 361, 760
RseI CAYNNNNRTG 3 cut(s) 362, 540, 839
SacI GAGCTC 1 cut(s) 1169
SacII CCGCGG 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 1049
SaqAI TTAA 3 cut(s) 663, 828, 854
Sau96I GGNCC 1 cut(s) 1112
SchI GAGTC 2 cut(s) 266, 469
ScrFI CCNGG 4 cut(s) 610, 745, 1032, 1110
SduI GDGCHC 2 cut(s) 1046, 1169
SfaNI GCATC 3 cut(s) 250, 646, 1081
SfcI CTRYAG 1 cut(s) 633
SfoI GGCGCC 1 cut(s) 130
Sfr303I CCGCGG 1 cut(s) 175
SgrAI CRCCGGYG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 175
SinI GGWCC 1 cut(s) 1112
SmiMI CAYNNNNRTG 3 cut(s) 362, 540, 839
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
SspDI GGCGCC 1 cut(s) 128
SspI AATATT 1 cut(s) 669
SspMI CTAG 2 cut(s) 605, 1022
SstI GAGCTC 1 cut(s) 1169
StyD4I CCNGG 4 cut(s) 608, 743, 1030, 1108
StyI CCWWGG 2 cut(s) 547, 683
TaaI ACNGT 3 cut(s) 105, 841, 848
TaiI ACGT 3 cut(s) 362, 392, 752
TaqI TCGA 1 cut(s) 374
TasI AATT 8 cut(s) 376, 523, 579, 621, 713, 814, 956, 1127
TatI WGTACW 1 cut(s) 759
TauI GCSGC 8 cut(s) 171, 174, 177, 274, 277, 280, 401, 404
TfiI GAWTC 2 cut(s) 775, 1136
Tru1I TTAA 3 cut(s) 663, 828, 854
Tru9I TTAA 3 cut(s) 663, 828, 854
TscAI CASTG 4 cut(s) 140, 547, 853, 1187
TseFI GTSAC 2 cut(s) 472, 542
TseI GCWGC 5 cut(s) 199, 202, 238, 941, 1025
Tsp45I GTSAC 2 cut(s) 472, 542
TspDTI ATGAA 4 cut(s) 430, 517, 617, 1008
TspRI CASTG 4 cut(s) 140, 547, 853, 1187
VpaK11BI GGWCC 1 cut(s) 1112
XapI RAATTY 4 cut(s) 376, 621, 713, 1127
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 605, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.