Prupe.1G322800_v2.0.a1

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016227
Physical Location & Seq
Forward (+)
30844303 .. 30848332
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G322800.1

Sequence Viewer

Length: 1191 bp
ATGGGAGCTGAGAAGAAATGGCTCCTAACGCTCTTCTCGGCTACATTCCTCTCTCTCCTCCTCCTCTTGCTCTCTTCCATCTCTGCCTTCAGCTCACCCAAACCCTTCCCTTCAATTGTCCAGCACGGCTCTCACTACCCGCCCGCTTTCGCTTACTACATATGGGGCGGCCGGGGCGATAGGGGTCGGATCCTCCGGCTATTGCTCGCCGTCTATCATCCGAGAAATCGCTACTTGTTGCATCTCTCGGCTGATGAATCTGAAGATGAGCGGCGCCGCCTTGCCTCGGCCATCAAGGCGGTGCCAGCAATTCGAGCATTTGGGAATGTGGATGTGGTGGGCAAGCCTGATCGAATCACCTACATGGGCTCTTCGAATATTGCCACCACGTTGCGCGCTGCGGCGATTTTATTGAAGGTTGACAGTGGATGGGATTGGTTCGTCACTTTGAGTGCTATGGATTACCCACTTATCACTCAGGACGACCTGTCTCATGTGTTCTCCTCTGTTAGAAGAGATCTCAATTTCATTGATCACACCAGTGACCTTGGATGGAAAGAGTTGCATAGGGTCCAGCCAATTGTAGTTGATCCAGGGTTATACCTAGCCCGGAGGAGCCAAATTTTCCATGCTACAGAGAAGCGGAAAACTCCTGATGCTTTTAAAATATTCACAGGTTCCCCATGGGTCATCCTGAGCAGATCCTTTCTGGAATTTTGCATTCTTGGTTGGGATAACCTTCCCCGGACCATGCTCATGTACTTTACGAATGTGATGTTGTCCCAGGAAGGATATTTTCATTCTGTTATATGCAATTCACCAGAGTTTAAGAACACTACTGTGAACAGTGATTTAAGATACATGATCTGGGACACTCCGCCCAAAATGGAACCCCACTTCCTCAATATCTCGGATTATGATCAAATGGTTCAAGGTGGAGCTGCTTTTGCCCGACAATTCCAGAAAGATGACCCTGTGCTGGACGTGGTTGATGAAAAGATCCTCAAGCGTGGGCGAAGTCGAGCTGCCCCAGGGGCATGGTGCTCAGGCTGGAAAAGCTGGTGGATGGATCCATGCTCTCAATGGGGTGATGCCAATATCTTGAAGCCGGGGCCCCAAGCGAAGAAATTTGAAGAGTCGATTACTAACCTTCTTGATGACTGGACTGCGCAATCAAATCAATGCCAATGA

Protein Analysis

397

Amino Acids

45.13

Weight (kDa)

8.48

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71070
fragaria_vesca FvH4_4g32220
malus_domestica MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica Prupe.1G322800_v2.0.a1
pyrus_communis pycom13g02580 pycom16g02570
rosa_chinensis RchiOBHm_Chr4g0440961
rosa_laevigata RLG00000006136
rosa_multiflora Rmu_sc0000424.1_g000027
rosa_roxburghii Rroxscaffold_5G00381820
rosa_rugosa Rorug04G0329700
rosa_samantha Rh4AG381500 Rh4DG388000
rosa_wichuraiana Rw4G032860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1170
AccB1I GGYRCC 2 cut(s) 273, 301
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 1 cut(s) 396
AciI CCGC 9 cut(s) 140, 144, 168, 271, 277, 299, 401, 643, 878
AclWI GGATC 7 cut(s) 184, 197, 584, 696, 994, 1064, 1077
AcoI YGGCCR 2 cut(s) 169, 288
AcsI RAATTY 3 cut(s) 621, 713, 1127
AcuI CTGAAG 2 cut(s) 73, 282
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 2 cut(s) 286, 979
AgsI TTSAA 5 cut(s) 114, 415, 932, 1105, 1133
AhdI GACNNNNNGTC 1 cut(s) 487
AjiI CACGTC 1 cut(s) 985
AjnI CCWGG 3 cut(s) 592, 783, 1030
AleI CACNNNNGTG 2 cut(s) 540, 839
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
AluBI AGCT 5 cut(s) 8, 93, 941, 1025, 1059
AluI AGCT 5 cut(s) 8, 93, 941, 1025, 1059
Alw21I GWGCWC 1 cut(s) 1046
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 7 cut(s) 184, 197, 584, 696, 994, 1064, 1077
AoxI GGCC 3 cut(s) 169, 288, 1112
ApaI GGGCCC 1 cut(s) 1116
ApeKI GCWGC 3 cut(s) 398, 941, 1025
ApoI RAATTY 3 cut(s) 621, 713, 1127
AspLEI GCGC 4 cut(s) 276, 396, 398, 1171
AspS9I GGNCC 4 cut(s) 571, 747, 1112, 1113
AsuC2I CCSGG 4 cut(s) 173, 610, 745, 1110
AsuHPI GGTGA 4 cut(s) 87, 349, 810, 1100
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 571, 747
BaeGI GKGCMC 1 cut(s) 1116
BamHI GGATCC 2 cut(s) 189, 1069
BanI GGYRCC 2 cut(s) 273, 301
BanII GRGCYC 2 cut(s) 371, 1116
Bbv12I GWGCWC 1 cut(s) 1046
BbvI GCAGC 3 cut(s) 385, 928, 1012
BccI CCATC 5 cut(s) 86, 299, 423, 546, 1060
BceAI ACGGC 2 cut(s) 142, 194
BciT130I CCWGG 3 cut(s) 594, 785, 1032
BclI TGATCA 2 cut(s) 532, 919
BcnI CCSGG 4 cut(s) 173, 610, 745, 1110
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 277
BglI GCCNNNNNGGC 2 cut(s) 296, 1034
BglII AGATCT 1 cut(s) 517
BisI GCNGC 7 cut(s) 169, 272, 277, 399, 402, 942, 1026
BlsI GCNGC 7 cut(s) 170, 273, 278, 400, 403, 943, 1027
Bme1390I CCNGG 7 cut(s) 173, 594, 610, 745, 785, 1032, 1110
Bme18I GGWCC 2 cut(s) 571, 747
BmeRI GACNNNNNGTC 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 985
BmgT120I GGNCC 4 cut(s) 571, 747, 1112, 1113
BmrFI CCNGG 7 cut(s) 173, 594, 610, 745, 785, 1032, 1110
BmsI GCATC 3 cut(s) 250, 646, 1081
Bpu10I CCTNAGC 2 cut(s) 695, 1045
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 4 cut(s) 173, 610, 745, 1110
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 979
Bse1I ACTGG 2 cut(s) 540, 1166
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 3 cut(s) 594, 785, 1032
BseGI GGATG 6 cut(s) 217, 337, 434, 557, 690, 1071
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 2 cut(s) 286, 979
BseMII CTCAG 3 cut(s) 491, 686, 1059
BseNI ACTGG 2 cut(s) 540, 1166
BsePI GCGCGC 1 cut(s) 394
BseRI GAGGAG 5 cut(s) 47, 50, 53, 493, 628
BseSI GKGCMC 1 cut(s) 1116
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 385, 928, 1012
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 171, 290, 1114
BshNI GGYRCC 2 cut(s) 273, 301
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 1046
BsiSI CCGG 5 cut(s) 172, 196, 610, 745, 1109
BslFI GGGAC 2 cut(s) 766, 884
BslI CCNNNNNNNGG 2 cut(s) 286, 979
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 766, 884
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 3 cut(s) 171, 290, 1114
Bsp119I TTCGAA 1 cut(s) 374
Bsp120I GGGCCC 1 cut(s) 1112
Bsp1286I GDGCHC 3 cut(s) 371, 1046, 1116
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 9 cut(s) 140, 144, 168, 271, 277, 299, 401, 643, 878
BspANI GGCC 3 cut(s) 171, 290, 1114
BspCNI CTCAG 3 cut(s) 490, 687, 1058
BspFNI CGCG 1 cut(s) 396
BspPI GGATC 7 cut(s) 184, 197, 584, 696, 994, 1064, 1077
BspQI GCTCTTC 2 cut(s) 38, 376
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 273, 301
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 2 cut(s) 540, 1166
BssHII GCGCGC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 547, 683
Bst2UI CCWGG 3 cut(s) 594, 785, 1032
Bst4CI ACNGT 3 cut(s) 425, 841, 848
Bst6I CTCTTC 5 cut(s) 38, 79, 376, 508, 1128
BstACI GRCGYC 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 144, 207, 306, 344, 396
BstDEI CTNAG 4 cut(s) 9, 477, 695, 1045
BstDSI CCRYGG 1 cut(s) 683
BstF5I GGATG 6 cut(s) 217, 337, 434, 557, 690, 1071
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 4 cut(s) 276, 396, 398, 1171
BstMAI GTCTC 1 cut(s) 495
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 8 cut(s) 28, 174, 296, 305, 314, 947, 1034, 1056
BstNI CCWGG 3 cut(s) 594, 785, 1032
BstSCI CCNGG 7 cut(s) 171, 592, 608, 743, 783, 1030, 1108
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 1116
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 385, 928, 1012
BstX2I RGATCY 5 cut(s) 189, 517, 701, 999, 1069
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 5 cut(s) 189, 517, 701, 999, 1069
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 3 cut(s) 171, 290, 1114
BtgI CCRYGG 1 cut(s) 683
BtrI CACGTC 1 cut(s) 985
BtsCI GGATG 6 cut(s) 217, 337, 434, 557, 690, 1071
BtsIMutI CAGTG 3 cut(s) 430, 547, 853
Cac8I GCNNGC 5 cut(s) 144, 207, 306, 344, 396
CfoI GCGC 4 cut(s) 276, 396, 398, 1171
Cfr13I GGNCC 4 cut(s) 571, 747, 1112, 1113
Csp6I GTAC 1 cut(s) 760
CviAII CATG 9 cut(s) 364, 494, 629, 684, 751, 757, 862, 1038, 1074
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 4 cut(s) 9, 477, 695, 1045
DinI GGCGCC 1 cut(s) 275
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 169, 288
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 5 cut(s) 38, 79, 376, 508, 1128
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 5 cut(s) 38, 79, 376, 508, 1128
EciI GGCGGA 1 cut(s) 867
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 547, 683
Eco24I GRGCYC 2 cut(s) 371, 1116
Eco47I GGWCC 2 cut(s) 571, 747
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 73, 282
EcoO109I RGGNCCY 2 cut(s) 1112, 1113
EcoRII CCWGG 3 cut(s) 592, 783, 1030
EcoT14I CCWWGG 2 cut(s) 547, 683
EcoT38I GRGCYC 2 cut(s) 371, 1116
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
ErhI CCWWGG 2 cut(s) 547, 683
FaeI CATG 9 cut(s) 367, 497, 632, 687, 754, 760, 865, 1041, 1077
FaqI GGGAC 2 cut(s) 766, 884
FatI CATG 9 cut(s) 363, 493, 628, 683, 750, 756, 861, 1037, 1073
FauI CCCGC 2 cut(s) 147, 151
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 2 cut(s) 532, 919
Fnu4HI GCNGC 7 cut(s) 169, 272, 277, 399, 402, 942, 1026
FokI GGATG 6 cut(s) 204, 344, 441, 564, 677, 1078
FriOI GRGCYC 2 cut(s) 371, 1116
Fsp4HI GCNGC 7 cut(s) 169, 272, 277, 399, 402, 942, 1026
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 4 cut(s) 275, 395, 397, 1170
GluI GCNGC 7 cut(s) 169, 272, 277, 399, 402, 942, 1026
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 3 cut(s) 171, 290, 1114
HapII CCGG 5 cut(s) 172, 196, 610, 745, 1109
HhaI GCGC 4 cut(s) 276, 396, 398, 1171
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 9 cut(s) 367, 497, 632, 687, 754, 760, 865, 1041, 1077
Hin6I GCGC 4 cut(s) 274, 394, 396, 1169
HinP1I GCGC 4 cut(s) 274, 394, 396, 1169
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 257, 354, 1136
HpaII CCGG 5 cut(s) 172, 196, 610, 745, 1109
HphI GGTGA 4 cut(s) 87, 349, 810, 1100
Hpy166II GTNNAC 2 cut(s) 421, 844
Hpy188I TCNGA 4 cut(s) 189, 222, 262, 913
Hpy188III TCNNGA 7 cut(s) 479, 653, 694, 710, 961, 1102, 1154
Hpy8I GTNNAC 2 cut(s) 421, 844
HpyAV CCTTC 7 cut(s) 97, 115, 120, 409, 749, 782, 1160
HpyCH4III ACNGT 3 cut(s) 425, 841, 848
HpyCH4IV ACGT 2 cut(s) 389, 984
HpyCH4V TGCA 4 cut(s) 241, 565, 720, 813
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 174, 296, 305, 314, 947, 1034, 1056
HpyF3I CTNAG 4 cut(s) 9, 477, 695, 1045
HpySE526I ACGT 2 cut(s) 389, 984
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 9 cut(s) 367, 497, 632, 687, 754, 760, 865, 1041, 1077
HspAI GCGC 4 cut(s) 274, 394, 396, 1169
KasI GGCGCC 1 cut(s) 273
Ksp22I TGATCA 2 cut(s) 532, 919
LguI GCTCTTC 2 cut(s) 38, 376
LmnI GCTCC 4 cut(s) 5, 27, 615, 938
Lsp1109I GCAGC 3 cut(s) 385, 928, 1012
LweI GCATC 3 cut(s) 250, 646, 1081
MaeI CTAG 1 cut(s) 605
MaeII ACGT 2 cut(s) 389, 984
MaeIII GTNAC 2 cut(s) 442, 542
MbiI CCGCTC 1 cut(s) 271
MboII GAAGA 8 cut(s) 25, 25, 66, 275, 363, 525, 1135, 1145
MfeI CAATTG 2 cut(s) 114, 579
MflI RGATCY 5 cut(s) 189, 517, 701, 999, 1069
MhlI GDGCHC 3 cut(s) 371, 1046, 1116
MluCI AATT 9 cut(s) 114, 309, 523, 579, 621, 713, 814, 956, 1127
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 1 cut(s) 1145
MmeI TCCRAC 1 cut(s) 167
MseI TTAA 3 cut(s) 663, 828, 854
MslI CAYNNNNRTG 4 cut(s) 362, 540, 755, 839
MspI CCGG 5 cut(s) 172, 196, 610, 745, 1109
MspR9I CCNGG 7 cut(s) 173, 594, 610, 745, 785, 1032, 1110
MunI CAATTG 2 cut(s) 114, 579
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 3 cut(s) 594, 785, 1032
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 8 cut(s) 28, 174, 296, 305, 314, 947, 1034, 1056
NarI GGCGCC 1 cut(s) 274
NciI CCSGG 4 cut(s) 173, 610, 745, 1110
NcoI CCATGG 1 cut(s) 683
NdeI CATATG 1 cut(s) 161
NlaIII CATG 9 cut(s) 367, 497, 632, 687, 754, 760, 865, 1041, 1077
NmeAIII GCCGAG 3 cut(s) 17, 227, 266
NmuCI GTSAC 2 cut(s) 442, 542
NsbI TGCGCA 1 cut(s) 1170
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 2 cut(s) 540, 839
PasI CCCWGGG 1 cut(s) 1031
PauI GCGCGC 1 cut(s) 394
PciSI GCTCTTC 2 cut(s) 38, 376
PctI GAATGC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 257, 354
PkrI GCNGC 7 cut(s) 170, 273, 278, 400, 403, 943, 1027
PleI GAGTC 1 cut(s) 1144
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 1144
Psp6I CCWGG 3 cut(s) 592, 783, 1030
PspGI CCWGG 3 cut(s) 592, 783, 1030
PspOMI GGGCCC 1 cut(s) 1112
PspPI GGNCC 4 cut(s) 571, 747, 1112, 1113
PsuI RGATCY 5 cut(s) 189, 517, 701, 999, 1069
PteI GCGCGC 1 cut(s) 394
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 4 cut(s) 362, 540, 755, 839
SapI GCTCTTC 2 cut(s) 38, 376
SaqAI TTAA 3 cut(s) 663, 828, 854
SatI GCNGC 7 cut(s) 169, 272, 277, 399, 402, 942, 1026
Sau96I GGNCC 4 cut(s) 571, 747, 1112, 1113
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 7 cut(s) 173, 594, 610, 745, 785, 1032, 1110
SduI GDGCHC 3 cut(s) 371, 1046, 1116
SfaNI GCATC 3 cut(s) 250, 646, 1081
SfcI CTRYAG 1 cut(s) 633
SfoI GGCGCC 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 2 cut(s) 571, 747
SmiMI CAYNNNNRTG 4 cut(s) 362, 540, 755, 839
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 9 cut(s) 114, 309, 523, 579, 621, 713, 814, 956, 1127
SsiI CCGC 9 cut(s) 140, 144, 168, 271, 277, 299, 401, 643, 878
SspDI GGCGCC 1 cut(s) 273
SspI AATATT 2 cut(s) 379, 669
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 7 cut(s) 171, 592, 608, 743, 783, 1030, 1108
StyI CCWWGG 2 cut(s) 547, 683
TaaI ACNGT 3 cut(s) 425, 841, 848
TaiI ACGT 2 cut(s) 392, 987
TaqI TCGA 5 cut(s) 313, 352, 374, 1021, 1139
TasI AATT 9 cut(s) 114, 309, 523, 579, 621, 713, 814, 956, 1127
TatI WGTACW 1 cut(s) 759
TauI GCSGC 4 cut(s) 171, 274, 279, 404
TfiI GAWTC 2 cut(s) 257, 354
Tru1I TTAA 3 cut(s) 663, 828, 854
Tru9I TTAA 3 cut(s) 663, 828, 854
TscAI CASTG 3 cut(s) 430, 547, 853
TseFI GTSAC 2 cut(s) 442, 542
TseI GCWGC 3 cut(s) 398, 941, 1025
Tsp45I GTSAC 2 cut(s) 442, 542
TspDTI ATGAA 4 cut(s) 270, 517, 788, 1008
TspRI CASTG 3 cut(s) 430, 547, 853
VpaK11BI GGWCC 2 cut(s) 571, 747
XapI RAATTY 3 cut(s) 621, 713, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.