Rorug04G0329700

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016227
Physical Location & Seq
Reverse (-)
50440549 .. 50443123
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0329700.1

Sequence Viewer

Length: 1338 bp
ATGCAACACCACCTCCTCACCATCCTCACCTGCAACTTCATCGGCAATTTTAGGCAGACAAAGATTAACAACTTCGGCCTCCACACCATCCTCACCTGCAGAAAATTCGAGTTGTTCTTATTCACCAGCTTCGCCACTCCGCTGCTACCCACCATTGTGCCTCGCCGATTAGTAGACAAAGAACTCGGAGCCTCCACCATCGAGAAATCAAGGCTCACGTTCTGCGTGTCCTGCGTGGCGGATATCGGCATCGTCGAAGAAAATGTTCCAATTGACGACCTTGTTAGGCTAGTCGTATCCAAGCCAGTCCTGCATGTCGTAGAATTGAATGGCGGTGTGGGCGACGAGCCTGATGCTGCGGTCCCTGGGGCCTTTGGTGGTGCAAACCTTGCTGTGGCGAATGTGGCCTTGAGCCTCCACGATTTCGCTAGCGGTGGAGGAAGAAGCAGTCCTTATCCCCAAACCCAATCGAGAAGCAGCGGAGGACGACGTTGTTGTGCGGTGGTGGAGGTTGTTGTGGTCAAGTCATTGGCGACGGCGGCGGGGATGAACTCGGAGTGGATTGAGACGCAGCAGCGGTGTTTGATCGGCGATCGGCGGTGGGAATCGGACGAGCAAGATGATTTGAATCTTGATGATTCAAATCCGGGGAAGAAGAAACCAGAAAACAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAATAAAGAAAAAAAGAAAAGAAAAGAAAGAAAGAATTTGAGGTTTGCAACTAGGACAGGTGACACAGTTGTAGTTTCCTCGTCAACTCTGGCCAAAGAAATCCTCCGAACTCATGACCAAGTCTTCTGCAACCGAACCGTCCCAGATTGTGTCCACGCCTGCAATCACAGCTACTATAGCTTGCCATTTCTACCCGCATCACCAAAATGGAGAAATCTTCGAAAAATATGCAACTCCCATTTGTTTGCCGCAAAAATTCTGGACGCTAACAAAGCCAACCGGCGTGTGAAAGTGCAACACCTCATAGATGATGTTGATGAAAGCATGAGGGCGGGTAAGGCAGTGGAGATCGGAAAGGCTGCCTTCGCAACCACTCTGAATCTGTTGTCCCGGACTATCTTCTCGGTCGATTTAGCTGACCCGAGTAGCGAGATGGCTAGGAAGTTCAAGGAGAATGTTCGAGGTACAATGGAAGCTGTAGGGAAACCAAATATGGTGGACTTTTTCCCTTTGCTTAGGAAGCTTGACCCCCAAGGCATAAGGCGACGCGTGACTAAATATTTCCGGGAAACAGTAGTCTACTTCAACGGCATGATCGATGAAAGGTTGGAATCAAGAAAAGGGTACCAGTAG

Protein Analysis

445

Amino Acids

49.94

Weight (kDa)

9.59

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 229 - 440 4.4e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71070
fragaria_vesca FvH4_4g32220
malus_domestica MD13G1027100.v1.1 MD16G1030200.v1.1
prunus_persica Prupe.1G322800_v2.0.a1
pyrus_communis pycom13g02580 pycom16g02570
rosa_chinensis RchiOBHm_Chr4g0440961
rosa_laevigata RLG00000006136
rosa_multiflora Rmu_sc0000424.1_g000027
rosa_roxburghii Rroxscaffold_5G00381820
rosa_rugosa Rorug04G0329700
rosa_samantha Rh4AG381500 Rh4DG388000
rosa_wichuraiana Rw4G032860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 38, 104
Acc36I ACCTGC 2 cut(s) 38, 104
Acc65I GGTACC 1 cut(s) 1329
AccB1I GGYRCC 1 cut(s) 1329
AccI GTMKAC 2 cut(s) 174, 1284
AccII CGCG 1 cut(s) 1254
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 3 cut(s) 104, 739, 960
AfaI GTAC 2 cut(s) 1171, 1331
AfiI CCNNNNNNNGG 1 cut(s) 394
AflIII ACRYGT 1 cut(s) 1252
AgsI TTSAA 5 cut(s) 328, 628, 642, 1153, 1291
AjnI CCWGG 1 cut(s) 364
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 6 cut(s) 129, 876, 885, 1121, 1181, 1228
AluI AGCT 6 cut(s) 129, 876, 885, 1121, 1181, 1228
Alw26I GTCTC 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 1126
AoxI GGCC 4 cut(s) 76, 369, 405, 795
ApeKI GCWGC 6 cut(s) 142, 356, 477, 571, 574, 1064
ApoI RAATTY 3 cut(s) 104, 739, 960
Asp700I GAANNNNTTC 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 1329
AspS9I GGNCC 2 cut(s) 361, 369
AsuC2I CCSGG 3 cut(s) 648, 1096, 1271
AsuHPI GGTGA 6 cut(s) 10, 19, 85, 115, 776, 897
AsuII TTCGAA 1 cut(s) 925
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 1126
AvaII GGWCC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 797
BanI GGYRCC 1 cut(s) 1329
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 6 cut(s) 129, 343, 489, 583, 586, 1051
BccI CCATC 4 cut(s) 29, 95, 206, 1132
BceAI ACGGC 2 cut(s) 552, 1309
BcgI CGANNNNNNTGC 8 cut(s) 22, 56, 88, 122, 335, 369, 915, 949
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 3 cut(s) 648, 1096, 1271
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 4 cut(s) 290, 429, 756, 1143
BfmI CTRYAG 3 cut(s) 97, 880, 1182
BfuAI ACCTGC 2 cut(s) 38, 104
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 8 cut(s) 143, 357, 478, 540, 572, 575, 954, 1065
BlsI GCNGC 8 cut(s) 144, 358, 479, 541, 573, 576, 955, 1066
Bme1390I CCNGG 4 cut(s) 366, 648, 1096, 1271
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 1126
BmgT120I GGNCC 2 cut(s) 361, 369
BmiI GGNNCC 4 cut(s) 190, 363, 370, 1331
BmrFI CCNGG 4 cut(s) 366, 648, 1096, 1271
BmsI GCATC 3 cut(s) 258, 343, 911
BmtI GCTAGC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 820
Bpu10I CCTNAGC 1 cut(s) 1220
Bpu14I TTCGAA 1 cut(s) 925
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 3 cut(s) 648, 1096, 1271
Bsa29I ATCGAT 1 cut(s) 1302
BsaBI GATNNNNATC 2 cut(s) 627, 642
BsaJI CCNNGG 4 cut(s) 364, 365, 647, 1237
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 984
Bse1I ACTGG 2 cut(s) 305, 1333
Bse8I GATNNNNATC 2 cut(s) 627, 642
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 1302
BseDI CCNNGG 4 cut(s) 364, 365, 647, 1237
BseGI GGATG 3 cut(s) 21, 87, 552
BseJI GATNNNNATC 2 cut(s) 627, 642
BseLI CCNNNNNNNGG 1 cut(s) 394
BseNI ACTGG 2 cut(s) 305, 1333
BseRI GAGGAG 1 cut(s) 5
BseXI GCAGC 6 cut(s) 129, 343, 489, 583, 586, 1051
Bsh1236I CGCG 1 cut(s) 1254
Bsh1285I CGRYCG 2 cut(s) 595, 1113
BshFI GGCC 4 cut(s) 78, 371, 407, 797
BshNI GGYRCC 1 cut(s) 1329
BshVI ATCGAT 1 cut(s) 1302
BsiEI CGRYCG 2 cut(s) 595, 1113
BsiHKCI CYCGRG 1 cut(s) 1126
BsiSI CCGG 4 cut(s) 647, 985, 1096, 1270
BslFI GGGAC 3 cut(s) 347, 830, 1078
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 560
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 3 cut(s) 347, 830, 1078
BsnI GGCC 4 cut(s) 78, 371, 407, 797
BsoBI CYCGRG 1 cut(s) 1126
Bsp119I TTCGAA 1 cut(s) 925
Bsp143I GATC 4 cut(s) 585, 592, 1053, 1299
BspANI GGCC 4 cut(s) 78, 371, 407, 797
BspDI ATCGAT 1 cut(s) 1302
BspFNI CGCG 1 cut(s) 1254
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 4 cut(s) 190, 363, 370, 1331
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 2 cut(s) 38, 104
BspOI GCTAGC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 925
BspT107I GGYRCC 1 cut(s) 1329
BsrFI RCCGGY 1 cut(s) 984
BsrI ACTGG 2 cut(s) 305, 1333
BssAI RCCGGY 1 cut(s) 984
BssECI CCNNGG 4 cut(s) 364, 365, 647, 1237
BssMI GATC 4 cut(s) 585, 592, 1053, 1299
BssT1I CCWWGG 1 cut(s) 1237
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 772, 844, 1279
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 925
BstC8I GCNNGC 3 cut(s) 430, 865, 887
BstDEI CTNAG 1 cut(s) 1220
BstF5I GGATG 3 cut(s) 21, 87, 552
BstFNI CGCG 1 cut(s) 1254
BstKTI GATC 4 cut(s) 588, 595, 1056, 1302
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 4 cut(s) 585, 592, 1053, 1299
BstMCI CGRYCG 2 cut(s) 595, 1113
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 4 cut(s) 364, 646, 1094, 1269
BstSFI CTRYAG 3 cut(s) 97, 880, 1182
BstUI CGCG 1 cut(s) 1254
BstV1I GCAGC 6 cut(s) 129, 343, 489, 583, 586, 1051
BstV2I GAAGAC 1 cut(s) 820
Bsu15I ATCGAT 1 cut(s) 1302
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 4 cut(s) 78, 371, 407, 797
BsuTUI ATCGAT 1 cut(s) 1302
BtsCI GGATG 3 cut(s) 21, 87, 552
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 1 cut(s) 1053
BveI ACCTGC 2 cut(s) 38, 104
Cac8I GCNNGC 3 cut(s) 430, 865, 887
CciI TCATGA 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 984
Cfr13I GGNCC 2 cut(s) 361, 369
ClaI ATCGAT 1 cut(s) 1302
CseI GACGC 3 cut(s) 577, 977, 1260
Csp6I GTAC 2 cut(s) 1170, 1330
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviAII CATG 4 cut(s) 314, 818, 1030, 1297
CviQI GTAC 2 cut(s) 1170, 1330
DdeI CTNAG 1 cut(s) 1220
DpnI GATC 4 cut(s) 587, 594, 1055, 1301
DpnII GATC 4 cut(s) 585, 592, 1053, 1299
EaeI YGGCCR 1 cut(s) 795
EciI GGCGGA 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 1237
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 1126
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 1237
ErhI CCWWGG 1 cut(s) 1237
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 4 cut(s) 317, 821, 1033, 1300
FaiI YATR 9 cut(s) 315, 819, 882, 934, 1010, 1031, 1199, 1244, 1298
FalI AAGNNNNNCTT 4 cut(s) 436, 468, 1052, 1084
FaqI GGGAC 3 cut(s) 347, 830, 1078
FatI CATG 4 cut(s) 313, 817, 1029, 1296
FauI CCCGC 3 cut(s) 535, 907, 1030
FblI GTMKAC 2 cut(s) 174, 1284
Fnu4HI GCNGC 8 cut(s) 143, 357, 478, 540, 572, 575, 954, 1065
FokI GGATG 3 cut(s) 8, 74, 559
Fsp4HI GCNGC 8 cut(s) 143, 357, 478, 540, 572, 575, 954, 1065
FspBI CTAG 4 cut(s) 290, 429, 756, 1143
GluI GCNGC 8 cut(s) 143, 357, 478, 540, 572, 575, 954, 1065
HaeIII GGCC 4 cut(s) 78, 371, 407, 797
HapII CCGG 4 cut(s) 647, 985, 1096, 1270
HgaI GACGC 3 cut(s) 577, 977, 1260
Hin1II CATG 4 cut(s) 317, 821, 1033, 1300
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 5 cut(s) 605, 628, 638, 1084, 1316
HpaII CCGG 4 cut(s) 647, 985, 1096, 1270
HphI GGTGA 6 cut(s) 10, 19, 85, 115, 776, 897
Hpy166II GTNNAC 5 cut(s) 175, 789, 859, 1204, 1285
Hpy188I TCNGA 6 cut(s) 188, 556, 610, 812, 1058, 1083
Hpy188III TCNNGA 6 cut(s) 202, 471, 632, 818, 965, 1320
Hpy8I GTNNAC 5 cut(s) 175, 789, 859, 1204, 1285
Hpy99I CGWCG 5 cut(s) 257, 347, 492, 538, 1254
HpyAV CCTTC 1 cut(s) 1078
HpyCH4III ACNGT 3 cut(s) 772, 844, 1279
HpyCH4IV ACGT 2 cut(s) 218, 490
HpyF3I CTNAG 1 cut(s) 1220
HpySE526I ACGT 2 cut(s) 218, 490
Hsp92II CATG 4 cut(s) 317, 821, 1033, 1300
KpnI GGTACC 1 cut(s) 1333
Kzo9I GATC 4 cut(s) 585, 592, 1053, 1299
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 6 cut(s) 129, 343, 489, 583, 586, 1051
LweI GCATC 3 cut(s) 258, 343, 911
MaeI CTAG 4 cut(s) 290, 429, 756, 1143
MaeII ACGT 2 cut(s) 218, 490
MaeIII GTNAC 2 cut(s) 764, 1255
MalI GATC 4 cut(s) 587, 594, 1055, 1301
MboI GATC 4 cut(s) 585, 592, 1053, 1299
MfeI CAATTG 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 6 cut(s) 46, 104, 270, 323, 739, 960
MluI ACGCGT 1 cut(s) 1252
MluNI TGGCCA 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 1293
Mox20I TGGCCA 1 cut(s) 797
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 1 cut(s) 797
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 155, 910
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 3 cut(s) 142, 480, 577
MspI CCGG 4 cut(s) 647, 985, 1096, 1270
MspR9I CCNGG 4 cut(s) 366, 648, 1096, 1271
MunI CAATTG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 1254
NciI CCSGG 3 cut(s) 648, 1096, 1271
NdeII GATC 4 cut(s) 585, 592, 1053, 1299
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 4 cut(s) 317, 821, 1033, 1300
NlaIV GGNNCC 4 cut(s) 190, 363, 370, 1331
NmuCI GTSAC 2 cut(s) 764, 1255
NspI RCATGY 1 cut(s) 317
NspV TTCGAA 1 cut(s) 925
OliI CACNNNNGTG 1 cut(s) 155
PagI TCATGA 1 cut(s) 817
PaqCI CACCTGC 2 cut(s) 38, 104
PasI CCCWGGG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 1299
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 5 cut(s) 605, 628, 638, 1084, 1316
PflFI GACNNNGTC 1 cut(s) 824
PfoI TCCNGGA 2 cut(s) 1094, 1269
PkrI GCNGC 8 cut(s) 144, 358, 479, 541, 573, 576, 955, 1066
Ple19I CGATCG 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 190, 363, 370, 1331
PspPI GGNCC 2 cut(s) 361, 369
PstI CTGCAG 1 cut(s) 101
PsyI GACNNNGTC 1 cut(s) 824
PvuI CGATCG 1 cut(s) 595
RsaI GTAC 2 cut(s) 1171, 1331
RsaNI GTAC 2 cut(s) 1170, 1330
RseI CAYNNNNRTG 2 cut(s) 155, 910
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 8 cut(s) 143, 357, 478, 540, 572, 575, 954, 1065
Sau3AI GATC 4 cut(s) 585, 592, 1053, 1299
Sau96I GGNCC 2 cut(s) 361, 369
ScrFI CCNGG 4 cut(s) 366, 648, 1096, 1271
SfaNI GCATC 3 cut(s) 258, 343, 911
SfcI CTRYAG 3 cut(s) 97, 880, 1182
SfuI TTCGAA 1 cut(s) 925
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 155, 910
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 6 cut(s) 46, 104, 270, 323, 739, 960
SspI AATATT 1 cut(s) 1265
SspMI CTAG 4 cut(s) 290, 429, 756, 1143
StyD4I CCNGG 4 cut(s) 364, 646, 1094, 1269
StyI CCWWGG 1 cut(s) 1237
TaaI ACNGT 3 cut(s) 772, 844, 1279
TaiI ACGT 2 cut(s) 221, 493
TaqI TCGA 8 cut(s) 108, 201, 255, 470, 925, 1113, 1165, 1302
TaqII GACCGA 1 cut(s) 1099
TasI AATT 6 cut(s) 46, 104, 270, 323, 739, 960
TauI GCSGC 2 cut(s) 542, 956
TfiI GAWTC 5 cut(s) 605, 628, 638, 1084, 1316
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 1053
TseFI GTSAC 2 cut(s) 764, 1255
TseI GCWGC 6 cut(s) 142, 356, 477, 571, 574, 1064
Tsp45I GTSAC 2 cut(s) 764, 1255
TspDTI ATGAA 4 cut(s) 28, 563, 1038, 1320
TspRI CASTG 1 cut(s) 1053
Tth111I GACNNNGTC 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 3 cut(s) 104, 739, 960
XceI RCATGY 1 cut(s) 317
XmiI GTMKAC 2 cut(s) 174, 1284
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 4 cut(s) 290, 429, 756, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.