AT1G71360

protein self-association

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
26891956 .. 26894856
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71360.2

Sequence Viewer

Length: 1791 bp
ATGCAAAGATCACGGAGAGCTCTTCTGGTTAGAAGAAGAGTTTCTGAGACTACTTCTAATGGAAGGAATCGCTTCTACAAAGTTTCATTGTCTTTGGTTTTTCTCATATGGGGGCTTGTCTTCTTATCTACATTGTGGATCAGTCATGTTGATGGTGACAAAGGTAGATCTTTAGTGGATTCAGTTGAAAAAGGTGAACCGGATGATGAAAGGGCAGATGAGACAGCTGAGTCTGTTGATGCAACATCACTAGAGTCTACCTCTGTTCATTCTAATCCTGGATTGAGTTCGGATGTTGATATAGCTGCAGCCGGAGAAAGTAAAGGCTCAGAAACCATCTTGAAGCAATTAGAAGTCGATAACACAATCGTTATCGTAGGAAATGTTACAGAAAGCAAAGACAACGTGCCTATGAAGCAAAGTGAGATAAATAATAACACAGTTCCAGGGAATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTTCCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTAGAGACAAATCTTTGTCAGGCCAAGTAACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGCAGCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAGCATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACTGAAGGGAAGTTCGTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCGAGCATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGGACCTTGGTTTACCCAACTGATACGTGGGTTCATCTAGGGAATTTCACGGCTTTAAACATGAAGCACGAGCAGAACTTTACATTTGCAGATCCCAAATGGGTGAGATATCTAAAGCTAAACTTGCTAAGCCATTACGGTTCAGAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCTGTGGAGCGAATGCTGGAGGATTTGATATCTATCCAAGACAAGAACATATTGAAACTCCAAGAAGGAGACACTGAGCAGAAAGAGAAGAAGACAATGCAAGCAAAAGAGTCCTTCGAAAGCGATGAAGACAAGAGTAAACAGAAGGAGAAGGAACAAGAAGCCTCACCAGAGAATGCGGTTGTGAAAGATGAAGTATCACTTGAGAAAAGAAAGCTGCCAGATCCGGTGGAAGAGATAAAACATCAACCAGGAAGCAGAATGCCGGGGGACACTGTCTTGAAGATACTGATGCAGAAGATAAGGTCGCTGGACGTGAGCTTATCAGTTCTTGAGAGTTACTTGGAGGAACGGAGCTTGAAATACGGGATGATATTCAAGGAGATGGACCTGGAGGCGAGCAAGAGAGAGAAGGAGGTGGAGACTATGAGACTAGAGGTAGAAGGAATGAAGGAGAGGGAAGAGAATACGAAGAAAGAGGCGATGGAGATGAGAAAGTGGCGGATGAGAGTGGAGACAGAGCTTGAGAAGGCTGAGAATGAGAAAGAGAAAGTGAAGGAGAGGTTAGAGCAAGTGTTGGAAAGACTGGAGTGGATGGAGAAGAAAGGTGTGGTTGTGTTCACAATCTGTGTCGGGTTTGGGACTATAGCAGTTGTAGCCGTGGTTTTTGGTATGGGGATAGTTCGAGCAGAGAAGCAAGGTGGCTTGGCTTGGCTTCTGTTATTGATAAGCTCCACATTCGTTATGTTCATTTTGTCACTTTGA

Protein Analysis

596

Amino Acids

67.27

Weight (kDa)

5.38

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 245 - 367 1e-35 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 257
AciI CCGC 3 cut(s) 503, 1205, 1528
AclI AACGTT 1 cut(s) 767
AclWI GGATC 3 cut(s) 146, 923, 1244
AcsI RAATTY 3 cut(s) 793, 880, 983
AcuI CTGAAG 2 cut(s) 750, 839
AfaI GTAC 1 cut(s) 611
AjiI CACGTC 1 cut(s) 1342
AjnI CCWGG 5 cut(s) 277, 445, 595, 1276, 1416
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 8 cut(s) 41, 215, 455, 540, 1089, 1442, 1450, 1535
AlwI GGATC 3 cut(s) 146, 923, 1244
AoxI GGCC 2 cut(s) 508, 562
ApeKI GCWGC 5 cut(s) 305, 308, 620, 623, 1243
ApoI RAATTY 3 cut(s) 793, 880, 983
Asp700I GAANNNNTTC 2 cut(s) 40, 71
AspS9I GGNCC 2 cut(s) 840, 1414
AsuC2I CCSGG 2 cut(s) 692, 1293
AsuHPI GGTGA 5 cut(s) 167, 206, 784, 952, 1185
AsuII TTCGAA 1 cut(s) 1143
AvaII GGWCC 2 cut(s) 840, 1414
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanII GRGCYC 1 cut(s) 22
BauI CACGAG 2 cut(s) 492, 905
BbsI GAAGAC 3 cut(s) 112, 1124, 1161
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 5 cut(s) 292, 320, 610, 632, 1230
BccI CCATC 6 cut(s) 146, 344, 583, 1405, 1504, 1615
BceAI ACGGC 2 cut(s) 903, 1670
BciT130I CCWGG 5 cut(s) 279, 447, 597, 1278, 1418
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 2 cut(s) 692, 1293
BcoDI GTCTC 8 cut(s) 41, 215, 455, 540, 1089, 1442, 1450, 1535
BfaI CTAG 5 cut(s) 251, 543, 875, 1007, 1460
BfmI CTRYAG 2 cut(s) 306, 1671
BglII AGATCT 1 cut(s) 167
BisI GCNGC 5 cut(s) 306, 309, 621, 624, 1244
BlpI GCTNAGC 1 cut(s) 965
BlsI GCNGC 5 cut(s) 307, 310, 622, 625, 1245
Bme1390I CCNGG 7 cut(s) 279, 447, 597, 692, 1278, 1293, 1418
Bme18I GGWCC 2 cut(s) 840, 1414
BmgBI CACGTC 1 cut(s) 1342
BmgT120I GGNCC 2 cut(s) 840, 1414
BmiI GGNNCC 2 cut(s) 594, 841
BmrFI CCNGG 7 cut(s) 279, 447, 597, 692, 1278, 1293, 1418
BmsI GCATC 3 cut(s) 229, 690, 1308
BpiI GAAGAC 3 cut(s) 112, 1124, 1161
BplI GAGNNNNNCTC 4 cut(s) 245, 277, 791, 823
BpmI CTGGAG 3 cut(s) 1064, 1439, 1634
Bpu1102I GCTNAGC 1 cut(s) 965
Bpu14I TTCGAA 1 cut(s) 1143
BpuEI CTTGAG 4 cut(s) 1018, 1250, 1379, 1571
BpuMI CCSGG 2 cut(s) 692, 1293
BsaAI YACGTR 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 1058
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 446, 843, 1292, 1686
BsaWI WCCGGW 2 cut(s) 199, 1252
Bse1I ACTGG 3 cut(s) 472, 577, 1617
Bse8I GATNNNNATC 1 cut(s) 1058
BseBI CCWGG 5 cut(s) 279, 447, 597, 1278, 1418
BseDI CCNNGG 4 cut(s) 446, 843, 1292, 1686
BseGI GGATG 6 cut(s) 208, 298, 594, 1401, 1536, 1626
BseJI GATNNNNATC 1 cut(s) 1058
BseMII CTCAG 5 cut(s) 36, 219, 342, 1092, 1551
BseNI ACTGG 3 cut(s) 472, 577, 1617
BseXI GCAGC 5 cut(s) 292, 320, 610, 632, 1230
BsgI GTGCAG 1 cut(s) 976
BshFI GGCC 2 cut(s) 510, 564
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 5 cut(s) 200, 312, 691, 1253, 1292
BslFI GGGAC 4 cut(s) 707, 853, 1310, 1681
BsmAI GTCTC 8 cut(s) 41, 215, 455, 540, 1089, 1442, 1450, 1535
BsmFI GGGAC 4 cut(s) 707, 853, 1310, 1681
BsmI GAATGC 3 cut(s) 1044, 1207, 1293
BsnI GGCC 2 cut(s) 510, 564
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 1143
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
Bsp1720I GCTNAGC 1 cut(s) 965
BspACI CCGC 3 cut(s) 503, 1205, 1528
BspANI GGCC 2 cut(s) 510, 564
BspCNI CTCAG 5 cut(s) 37, 220, 341, 1093, 1552
BspLI GGNNCC 2 cut(s) 594, 841
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 3 cut(s) 146, 923, 1244
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 1143
BspTNI GGTCTC 1 cut(s) 455
BsrI ACTGG 3 cut(s) 472, 577, 1617
BssECI CCNNGG 4 cut(s) 446, 843, 1292, 1686
BssMI GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
BssSI CACGAG 2 cut(s) 492, 905
BssT1I CCWWGG 1 cut(s) 843
Bst2BI CACGAG 2 cut(s) 492, 905
Bst2UI CCWGG 5 cut(s) 279, 447, 597, 1278, 1418
Bst4CI ACNGT 3 cut(s) 442, 977, 1303
Bst6I CTCTTC 5 cut(s) 27, 31, 814, 1254, 1482
BstAPI GCANNNNNTGC 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 864
BstBI TTCGAA 1 cut(s) 1143
BstC8I GCNNGC 2 cut(s) 1128, 1426
BstDEI CTNAG 6 cut(s) 45, 228, 328, 965, 1101, 1560
BstDSI CCRYGG 1 cut(s) 1686
BstF5I GGATG 6 cut(s) 208, 298, 594, 1401, 1536, 1626
BstKTI GATC 6 cut(s) 11, 141, 170, 484, 931, 1252
BstMAI GTCTC 8 cut(s) 41, 215, 455, 540, 1089, 1442, 1450, 1535
BstMBI GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
BstMWI GCNNNNNNNGC 6 cut(s) 415, 484, 671, 687, 961, 1682
BstNI CCWGG 5 cut(s) 279, 447, 597, 1278, 1418
BstSCI CCNGG 7 cut(s) 277, 445, 595, 690, 1276, 1291, 1416
BstSFI CTRYAG 2 cut(s) 306, 1671
BstV1I GCAGC 5 cut(s) 292, 320, 610, 632, 1230
BstV2I GAAGAC 3 cut(s) 112, 1124, 1161
BstX2I RGATCY 3 cut(s) 167, 928, 1249
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 3 cut(s) 167, 928, 1249
BsuRI GGCC 2 cut(s) 510, 564
BtgI CCRYGG 1 cut(s) 1686
BtgZI GCGATG 2 cut(s) 1164, 1523
BtrI CACGTC 1 cut(s) 1342
BtsCI GGATG 6 cut(s) 208, 298, 594, 1401, 1536, 1626
BtsIMutI CAGTG 3 cut(s) 465, 1098, 1299
Cac8I GCNNGC 2 cut(s) 1128, 1426
Cfr13I GGNCC 2 cut(s) 840, 1414
CseI GACGC 2 cut(s) 522, 1034
Csp6I GTAC 1 cut(s) 610
CviAII CATG 2 cut(s) 146, 898
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 6 cut(s) 45, 228, 328, 965, 1101, 1560
DpnI GATC 6 cut(s) 10, 140, 169, 483, 930, 1251
DpnII GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
DraI TTTAAA 1 cut(s) 894
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 5 cut(s) 27, 31, 814, 1254, 1482
EarI CTCTTC 5 cut(s) 27, 31, 814, 1254, 1482
EciI GGCGGA 1 cut(s) 1543
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 2 cut(s) 947, 1056
Eco47I GGWCC 2 cut(s) 840, 1414
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 750, 839
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 840
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 5 cut(s) 277, 445, 595, 1276, 1416
EcoRV GATATC 2 cut(s) 947, 1056
EcoT14I CCWWGG 1 cut(s) 843
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 2 cut(s) 149, 901
FalI AAGNNNNNCTT 4 cut(s) 944, 976, 1212, 1244
FaqI GGGAC 4 cut(s) 707, 853, 1310, 1681
FatI CATG 2 cut(s) 145, 897
FauNDI CATATG 2 cut(s) 107, 686
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 5 cut(s) 306, 309, 621, 624, 1244
FokI GGATG 6 cut(s) 215, 305, 601, 1408, 1543, 1633
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 5 cut(s) 306, 309, 621, 624, 1244
FspBI CTAG 5 cut(s) 251, 543, 875, 1007, 1460
GluI GCNGC 5 cut(s) 306, 309, 621, 624, 1244
GsuI CTGGAG 3 cut(s) 1064, 1439, 1634
HaeIII GGCC 2 cut(s) 510, 564
HapII CCGG 5 cut(s) 200, 312, 691, 1253, 1292
HgaI GACGC 2 cut(s) 522, 1034
Hin1II CATG 2 cut(s) 149, 901
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 5 cut(s) 67, 179, 230, 254, 1136
HpaII CCGG 5 cut(s) 200, 312, 691, 1253, 1292
HphI GGTGA 5 cut(s) 167, 206, 784, 952, 1185
Hpy166II GTNNAC 8 cut(s) 197, 258, 775, 850, 1004, 1024, 1166, 1647
Hpy188I TCNGA 7 cut(s) 46, 292, 331, 713, 760, 819, 982
Hpy188III TCNNGA 6 cut(s) 340, 523, 543, 784, 1306, 1358
Hpy8I GTNNAC 8 cut(s) 197, 258, 775, 850, 1004, 1024, 1166, 1647
HpyCH4III ACNGT 3 cut(s) 442, 977, 1303
HpyCH4IV ACGT 4 cut(s) 405, 767, 863, 1341
HpyF10VI GCNNNNNNNGC 6 cut(s) 415, 484, 671, 687, 961, 1682
HpyF3I CTNAG 6 cut(s) 45, 228, 328, 965, 1101, 1560
HpySE526I ACGT 4 cut(s) 405, 767, 863, 1341
Hsp92II CATG 2 cut(s) 149, 901
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 5 cut(s) 592, 671, 1033, 1380, 1763
Lsp1109I GCAGC 5 cut(s) 292, 320, 610, 632, 1230
LweI GCATC 3 cut(s) 229, 690, 1308
MaeI CTAG 5 cut(s) 251, 543, 875, 1007, 1460
MaeII ACGT 4 cut(s) 405, 767, 863, 1341
MaeIII GTNAC 5 cut(s) 155, 385, 568, 1364, 1782
MalI GATC 6 cut(s) 10, 140, 169, 483, 930, 1251
MboI GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
MflI RGATCY 3 cut(s) 167, 928, 1249
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 347, 538, 613, 793, 880, 983
MlyI GAGTC 3 cut(s) 239, 263, 1145
MmeI TCCRAC 1 cut(s) 1584
MroXI GAANNNNTTC 2 cut(s) 40, 71
MseI TTAA 1 cut(s) 893
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 2 cut(s) 227, 623
MspI CCGG 5 cut(s) 200, 312, 691, 1253, 1292
MspR9I CCNGG 7 cut(s) 279, 447, 597, 692, 1278, 1293, 1418
Mva1269I GAATGC 3 cut(s) 1044, 1207, 1293
MvaI CCWGG 5 cut(s) 279, 447, 597, 1278, 1418
MwoI GCNNNNNNNGC 6 cut(s) 415, 484, 671, 687, 961, 1682
NciI CCSGG 2 cut(s) 692, 1293
NdeI CATATG 2 cut(s) 107, 686
NdeII GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
NlaIII CATG 2 cut(s) 149, 901
NlaIV GGNNCC 2 cut(s) 594, 841
NmuCI GTSAC 2 cut(s) 155, 1782
NspV TTCGAA 1 cut(s) 1143
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 3 cut(s) 1044, 1207, 1293
PdmI GAANNNNTTC 2 cut(s) 40, 71
PfeI GAWTC 2 cut(s) 67, 179
PflFI GACNNNGTC 1 cut(s) 1301
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 5 cut(s) 307, 310, 622, 625, 1245
PleI GAGTC 3 cut(s) 238, 262, 1144
PpsI GAGTC 3 cut(s) 238, 262, 1144
Ppu21I YACGTR 1 cut(s) 864
PpuMI RGGWCCY 1 cut(s) 840
Psp124BI GAGCTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 840
Psp6I CCWGG 5 cut(s) 277, 445, 595, 1276, 1416
PspGI CCWGG 5 cut(s) 277, 445, 595, 1276, 1416
PspN4I GGNNCC 2 cut(s) 594, 841
PspPI GGNCC 2 cut(s) 840, 1414
PspPPI RGGWCCY 1 cut(s) 840
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 3 cut(s) 167, 928, 1249
PsyI GACNNNGTC 1 cut(s) 1301
PvuII CAGCTG 2 cut(s) 227, 623
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 893
SatI GCNGC 5 cut(s) 306, 309, 621, 624, 1244
Sau3AI GATC 6 cut(s) 8, 138, 167, 481, 928, 1249
Sau96I GGNCC 2 cut(s) 840, 1414
SchI GAGTC 3 cut(s) 239, 263, 1145
ScrFI CCNGG 7 cut(s) 279, 447, 597, 692, 1278, 1293, 1418
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 3 cut(s) 229, 690, 1308
SfcI CTRYAG 2 cut(s) 306, 1671
SfuI TTCGAA 1 cut(s) 1143
SinI GGWCC 2 cut(s) 840, 1414
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 4 cut(s) 997, 1229, 1358, 1550
SmoI CTYRAG 4 cut(s) 997, 1229, 1358, 1550
Sse9I AATT 6 cut(s) 347, 538, 613, 793, 880, 983
SsiI CCGC 3 cut(s) 503, 1205, 1528
SspMI CTAG 5 cut(s) 251, 543, 875, 1007, 1460
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 7 cut(s) 277, 445, 595, 690, 1276, 1291, 1416
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 3 cut(s) 442, 977, 1303
TaiI ACGT 4 cut(s) 408, 770, 866, 1344
TaqI TCGA 4 cut(s) 357, 798, 1143, 1711
TasI AATT 6 cut(s) 347, 538, 613, 793, 880, 983
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 2 cut(s) 67, 179
Tru1I TTAA 1 cut(s) 893
Tru9I TTAA 1 cut(s) 893
TscAI CASTG 3 cut(s) 472, 1105, 1306
TseFI GTSAC 2 cut(s) 155, 1782
TseI GCWGC 5 cut(s) 305, 308, 620, 623, 1243
Tsp45I GTSAC 2 cut(s) 155, 1782
TspGWI ACGGA 2 cut(s) 28, 1393
TspRI CASTG 3 cut(s) 472, 1105, 1306
Tth111I GACNNNGTC 1 cut(s) 1301
VpaK11BI GGWCC 2 cut(s) 840, 1414
XapI RAATTY 3 cut(s) 793, 880, 983
XbaI TCTAGA 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 40, 71
XspI CTAG 5 cut(s) 251, 543, 875, 1007, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.