Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001209.1

Orthogroup ID

OG0003815

Physical Location & Seq

Genomic Coordinates Forward (+)

151053 .. 160324

Gene Structure 9272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001209.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3201 bp

atgcagaggtcgcgtagagctcttctgcataggagagctttggaaaaggtcatcaccggaaggagccgcttgtataaggtgtctctatctttagtttttgctctgtgggggtttgtcttccttatcagcttatggtttagtcgtggcgacggacacagagatggatccacagcatctccagttggattatcaacttggaatgaaactaagctggatcgtgatgaacacactgattctgtagaactacaaaagcaagaggatttagtctactcttctgaaggtgtgtgcacaaatggtgttgaaactggtagtttaaatggtgaactacttagtgaaggaaataaacatcaggcctcaacagaaggaagtgcaatttataactcggccgtagctgagcaacctgaattggagaaatctagttcaggcgtgaaacatgaaattgatgctccaaaaaatggccgcctgcctcgtgctgtgcctcttggtcttgatgaattcaagagcaaaacatttggttcaaaaattaaatctgtaattggtcaggctggaggcataaaacatagagtggagcctggtggtacagagtacaattatgcttcagctgcaaagggagccaaggtcttggcttttaacaaggaagccaagggtgcctctaatatcataagcagagacaaggacaagtaccttcgcaatccatgttctgcagaagaaaagtttgttgatatagaactttcagaagaaaccttggtagacacaatcaaaataggtaatcttgaacactattcatctaatttaagggattttgagctgcttgggagtttggtttatccaacagatgaatgggttaagcttgggaatttcactgcagcaaatattaagcttgcgcaaagatttgatcttgaggaacctaagtgggtgagatatataaggttaaggcttttaaaccatcatggttcagagttctattgcacagtcagtgttattgaaatttatggaattgatgctgttgagcgaatgcttgaggatttaatttctgttgaaagcggtgcatatgtttctaatggagtaactgttgaccagaaacctgtgacctcccacccagattcccctgagggtgatgatttttttaatattgataaagaaatggaacctcaagctgcagttgaaaactctaatgtgaacaatgaaatcatcaagagtgatgtgcctgatcctatcaaagaagtacttcatcaacaaggtagcaggatgcctggggatactgttcttaagatactaatgcagaaagtccgttcattggattttagtttatcactacttgagcgataccttgaggaatcaaattcaagatacggcagcattttcaaagaattcgagacagatatggaagagaaagagttagatttaaagaagatcaaagaaaacatgaggaatctcttagaaagccaggaagtaattgctaaagatgtaaacaatctcatgtcttggcagtcccttgtctctgtgcaattggataatttagtcagggataacgctatcctcaggtctgaggttgaaaaggtcagggagaagcagatatctgtagataataagggccagcagctatctcattcgactaaactagatgagacagagtgtaattgtcactgccgagaaatgaagcctctcaacaacaagccatctttgttttcaccattttggtcatcttctacttcttcttcttcggttttgattctagtgcttgtagctctcatttgcacgttgggcgtcacaagttcgttttcatggtcatggagagttggtaacgtactgggtactgactactcttcatcactagttttctcaacaaaagcaaggcctagttctcaagtagtgcgtgaggaagcggcagcagaagctcatcctattgtcagtccttcatcaaatgattcagaaccaaatgaaacagtacatcttccccccaatcaaattgtagagaaacaagaggtagtgttgaatgataaagaatttggtgaaattaatgctacttctgcatctgaaacaataagtataaaaagatacagcaggttagagaaacttgaagcaagtttggctggagttcgggcatccataagagaagctgctcgagtacgaaatctgacttctacccatgaagatccagactatgttcctcaaggtccaatatatagaaatgcaaatgcttttcacaggagttacttggagatggaaaggctgttcaagatatatgtatatcaagaaggagatccacccatatttcataatggtccttgcaagagcatatattctacagagggaaggttcattcatgaaatggaaatggacaatacttataggaccacaaacccagacgatgcccttgtttattttcttccattcagtgtggtgatgttggttcagtacctctatgtggccgagtcccatgacactgagtccattggtcgtgctgtggttgactatgtcaatgtcatctctgataaacatcccttttggaatcgtagccttggtgctgaccactttatgctttcctgccatgattggctataccacaagtccataagggtactatgcaatgcaaacacttcggaaggattcaatccttccaaagatgtgtcatttccagaaatccatctccgaactggcgaaaccaaaggacttctcggtggtctctccccctctcgccggtcaattctcgccttctttgcaggccggctgcatggccacataaggtacctgcttttaaatgaatggaaagaaaaagaccaagatgtgcaagtttatgaccaacttccccatggagtatcctatgagtcaatgttaaagcagagcaagttctgcttgtgccccagcggttacgaagtggcgagcccaagaattgtagaagccatctacgcagaatgcgtgccggtgttgatttcggataattatgttccgccgttcagtgatgttttagactggaagtcattttcagtccaagtacaagtgaaggatataccaaatatcaaaacaatactaatgggaatatctcagagccagtacttgagaatgcataggagagtgaaactggtgcagaggcattttgtggtgaatggaccttccaagagatatgacgttttcaatatgattgttcattctatttggctcaggaggttgaatatccgcattgaggatcaggtcgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

1066

Amino Acids

120.51

Weight (kDa)

5.82

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22882 AT1G71360 AT1G71360
fragaria_vesca	FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480
malus_domestica	MD05G1001800.v1.1 MD10G1003000.v1.1
prunus_persica	Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1
pyrus_communis	pycom05g00200 pycom10g00240
rosa_chinensis	RchiOBHm_Chr6g0250471
rosa_laevigata	RLG00000015538
rosa_multiflora	Rmu_sc0001209.1_g000035
rosa_roxburghii	Rroxscaffold_7G00217210
rosa_rugosa	Rorug05G0497300 Rorug05G0497400 Rorug05G0497400 Rorug05G0497400
rosa_samantha	Rh6AG006100 Rh6BG004600 Rh6CG004300 Rh6DG004200
rosa_wichuraiana	Rw0G015440 Rw6G000660 Rw6G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc16I	TGCGCA	1 cut(s)	885
Acc36I	ACCTGC	2 cut(s)	2055, 2760
Acc65I	GGTACC	1 cut(s)	2748
AccB1I	GGYRCC	2 cut(s)	647, 2748
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccI	GTMKAC	2 cut(s)	267, 750
AccII	CGCG	1 cut(s)	13
AciI	CCGC	7 cut(s)	67, 460, 1044, 1886, 2868, 2951, 3178
AclWI	GGATC	7 cut(s)	159, 172, 222, 1205, 2150, 2258, 3195
AcoI	YGGCCR	4 cut(s)	384, 457, 2430, 2737
AcsI	RAATTY	6 cut(s)	494, 856, 987, 1342, 1370, 2006
AcuI	CTGAAG	2 cut(s)	297, 582
AcyI	GRCGYC	1 cut(s)	1767
AfiI	CCNNNNNNNGG	5 cut(s)	455, 1297, 2428, 2700, 3184
AflII	CTTAAG	1 cut(s)	1268
AhdI	GACNNNNNGTC	2 cut(s)	2449, 2977
AhlI	ACTAGT	1 cut(s)	1834
AjnI	CCWGG	3 cut(s)	571, 1252, 1446
AloI	GAACNNNNNNTCC	2 cut(s)	2219, 2251
Alw21I	GWGCWC	2 cut(s)	22, 290
Alw26I	GTCTC	6 cut(s)	87, 663, 1370, 1504, 1622, 2690
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	7 cut(s)	159, 172, 222, 1205, 2150, 2258, 3195
Ama87I	CYCGRG	1 cut(s)	2124
AoxI	GGCC	8 cut(s)	351, 384, 457, 1594, 1856, 2430, 2725, 2737
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	9 cut(s)	602, 808, 866, 1157, 1356, 1600, 1889, 2120, 2731
ApoI	RAATTY	6 cut(s)	494, 856, 987, 1342, 1370, 2006
AseI	ATTAAT	1 cut(s)	2019
Asp700I	GAANNNNTTC	1 cut(s)	1227
Asp718I	GGTACC	1 cut(s)	2748
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	5 cut(s)	1594, 2177, 2285, 2355, 3110
AsuHPI	GGTGA	8 cut(s)	46, 332, 928, 1127, 1683, 2024, 2416, 3115
AvaI	CYCGRG	1 cut(s)	2124
AvaII	GGWCC	4 cut(s)	2177, 2285, 2355, 3110
AxyI	CCTNAGG	2 cut(s)	1110, 1541
BaeGI	GKGCMC	2 cut(s)	290, 2864
BalI	TGGCCA	1 cut(s)	2739
BamHI	GGATCC	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	647, 2748
BanII	GRGCYC	2 cut(s)	22, 2888
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	22, 290
BbvI	GCAGC	9 cut(s)	589, 795, 878, 1144, 1368, 1612, 1901, 2107, 2718
BccI	CCATC	6 cut(s)	155, 954, 1687, 2218, 2655, 2912
BceAI	ACGGC	3 cut(s)	371, 1369, 2938
BcgI	CGANNNNNNTGC	2 cut(s)	2583, 2617
BciT130I	CCWGG	3 cut(s)	573, 1254, 1448
BciVI	GTATCC	2 cut(s)	1252, 2830
BcoDI	GTCTC	6 cut(s)	87, 663, 1370, 1504, 1622, 2690
BcuI	ACTAGT	1 cut(s)	1834
BfaI	CTAG	5 cut(s)	417, 1622, 1736, 1835, 1860
BfmI	CTRYAG	6 cut(s)	237, 702, 864, 1158, 1581, 2307
BfrI	CTTAAG	1 cut(s)	1268
BfuAI	ACCTGC	2 cut(s)	2055, 2760
BfuI	GTATCC	2 cut(s)	1252, 2830
BlpI	GCTNAGC	1 cut(s)	393
BmcAI	AGTACT	2 cut(s)	1227, 3056
Bme1390I	CCNGG	3 cut(s)	573, 1254, 1448
Bme18I	GGWCC	4 cut(s)	2177, 2285, 2355, 3110
BmeRI	GACNNNNNGTC	2 cut(s)	2449, 2977
BmeT110I	CYCGRG	1 cut(s)	2124
BmgT120I	GGNCC	5 cut(s)	1594, 2177, 2285, 2355, 3110
BmiI	GGNNCC	8 cut(s)	65, 166, 570, 613, 649, 906, 1149, 2750
BmrFI	CCNGG	3 cut(s)	573, 1254, 1448
BmrI	ACTGGG	1 cut(s)	1820
BmsI	GCATC	7 cut(s)	182, 433, 991, 1239, 2042, 2114, 2362
BmuI	ACTGGG	1 cut(s)	1820
BpiI	GAAGAC	1 cut(s)	109
BpmI	CTGGAG	3 cut(s)	162, 567, 2115
Bpu10I	CCTNAGC	1 cut(s)	3161
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	8 cut(s)	920, 1040, 1137, 1340, 1352, 1851, 2157, 3079
BsaBI	GATNNNNATC	1 cut(s)	2499
BsaHI	GRCGYC	1 cut(s)	1767
BsaI	GGTCTC	1 cut(s)	2690
BsaJI	CCNNGG	6 cut(s)	615, 642, 744, 1253, 2521, 2812
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	8 cut(s)	160, 190, 603, 633, 1056, 1086, 1786, 1816
Bsc4I	CCNNNNNNNGG	5 cut(s)	455, 1297, 2428, 2700, 3184
Bse118I	RCCGGY	3 cut(s)	2700, 2727, 2923
Bse1I	ACTGG	7 cut(s)	179, 310, 1815, 2662, 2978, 3052, 3087
Bse21I	CCTNAGG	2 cut(s)	1110, 1541
Bse3DI	GCAATG	1 cut(s)	2596
Bse8I	GATNNNNATC	1 cut(s)	2499
BseBI	CCWGG	3 cut(s)	573, 1254, 1448
BseDI	CCNNGG	6 cut(s)	615, 642, 744, 1253, 2521, 2812
BseGI	GGATG	4 cut(s)	1254, 1900, 2105, 2500
BseJI	GATNNNNATC	1 cut(s)	2499
BseLI	CCNNNNNNNGG	5 cut(s)	455, 1297, 2428, 2700, 3184
BseMI	GCAATG	1 cut(s)	2596
BseMII	CTCAG	7 cut(s)	384, 1101, 1539, 1555, 2439, 3059, 3175
BseNI	ACTGG	7 cut(s)	179, 310, 1815, 2662, 2978, 3052, 3087
BseSI	GKGCMC	2 cut(s)	290, 2864
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	9 cut(s)	589, 795, 878, 1144, 1368, 1612, 1901, 2107, 2718
BseYI	CCCAGC	1 cut(s)	2864
BsgI	GTGCAG	1 cut(s)	3107
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	8 cut(s)	353, 386, 459, 1596, 1858, 2432, 2727, 2739
BshNI	GGYRCC	2 cut(s)	647, 2748
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	22, 290
BsiHKCI	CYCGRG	1 cut(s)	2124
BsiSI	CCGG	4 cut(s)	57, 2701, 2728, 2924
BslFI	GGGAC	2 cut(s)	1477, 2422
BslI	CCNNNNNNNGG	5 cut(s)	455, 1297, 2428, 2700, 3184
BsmAI	GTCTC	6 cut(s)	87, 663, 1370, 1504, 1622, 2690
BsmFI	GGGAC	2 cut(s)	1477, 2422
BsmI	GAATGC	3 cut(s)	1020, 2921, 3069
BsnI	GGCC	8 cut(s)	353, 386, 459, 1596, 1858, 2432, 2727, 2739
Bso31I	GGTCTC	1 cut(s)	2690
BsoBI	CYCGRG	1 cut(s)	2124
Bsp1286I	GDGCHC	4 cut(s)	22, 290, 2864, 2888
Bsp143I	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	2812
BspACI	CCGC	7 cut(s)	67, 460, 1044, 1886, 2868, 2951, 3178
BspANI	GGCC	8 cut(s)	353, 386, 459, 1596, 1858, 2432, 2727, 2739
BspCNI	CTCAG	7 cut(s)	385, 1102, 1540, 1554, 2440, 3058, 3174
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	2326
BspLI	GGNNCC	8 cut(s)	65, 166, 570, 613, 649, 906, 1149, 2750
BspMAI	CTGCAG	3 cut(s)	706, 868, 1162
BspMI	ACCTGC	2 cut(s)	2055, 2760
BspPI	GGATC	7 cut(s)	159, 172, 222, 1205, 2150, 2258, 3195
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	2 cut(s)	647, 2748
BspTI	CTTAAG	1 cut(s)	1268
BspTNI	GGTCTC	1 cut(s)	2690
BsrDI	GCAATG	1 cut(s)	2596
BsrFI	RCCGGY	3 cut(s)	2700, 2727, 2923
BsrI	ACTGG	7 cut(s)	179, 310, 1815, 2662, 2978, 3052, 3087
BssAI	RCCGGY	3 cut(s)	2700, 2727, 2923
BssECI	CCNNGG	6 cut(s)	615, 642, 744, 1253, 2521, 2812
BssMI	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
BssNI	GRCGYC	1 cut(s)	1767
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	5 cut(s)	615, 642, 744, 2521, 2812
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	573, 1254, 1448
Bst4CI	ACNGT	4 cut(s)	973, 1072, 1264, 1948
Bst6I	CTCTTC	4 cut(s)	27, 277, 1383, 1831
BstACI	GRCGYC	1 cut(s)	1767
BstAFI	CTTAAG	1 cut(s)	1268
BstAPI	GCANNNNNTGC	1 cut(s)	2853
BstC8I	GCNNGC	7 cut(s)	464, 882, 1598, 2725, 2729, 2884, 2921
BstDSI	CCRYGG	1 cut(s)	2812
BstF5I	GGATG	4 cut(s)	1254, 1900, 2105, 2500
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	8 cut(s)	167, 217, 898, 1213, 1416, 2158, 2266, 3190
BstMAI	GTCTC	6 cut(s)	87, 663, 1370, 1504, 1622, 2690
BstMBI	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
BstMCI	CGRYCG	1 cut(s)	387
BstNI	CCWGG	3 cut(s)	573, 1254, 1448
BstSCI	CCNGG	3 cut(s)	571, 1252, 1446
BstSFI	CTRYAG	6 cut(s)	237, 702, 864, 1158, 1581, 2307
BstSLI	GKGCMC	2 cut(s)	290, 2864
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	9 cut(s)	589, 795, 878, 1144, 1368, 1612, 1901, 2107, 2718
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	3 cut(s)	164, 2155, 2263
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	3 cut(s)	164, 2155, 2263
BstZI	CGGCCG	1 cut(s)	384
Bsu36I	CCTNAGG	2 cut(s)	1110, 1541
BsuI	GTATCC	2 cut(s)	1252, 2830
BsuRI	GGCC	8 cut(s)	353, 386, 459, 1596, 1858, 2432, 2727, 2739
BtgI	CCRYGG	1 cut(s)	2812
BtsCI	GGATG	4 cut(s)	1254, 1900, 2105, 2500
BtsI	GCAGTG	2 cut(s)	861, 1645
BtsIMutI	CAGTG	7 cut(s)	228, 861, 982, 1645, 2404, 2445, 2965
BveI	ACCTGC	2 cut(s)	2055, 2760
Cac8I	GCNNGC	7 cut(s)	464, 882, 1598, 2725, 2729, 2884, 2921
CciI	TCATGA	1 cut(s)	2326
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	3 cut(s)	2700, 2727, 2923
Cfr13I	GGNCC	5 cut(s)	1594, 2177, 2285, 2355, 3110
CseI	GACGC	1 cut(s)	1756
DpnI	GATC	8 cut(s)	166, 216, 897, 1212, 1415, 2157, 2265, 3189
DpnII	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
DraI	TTTAAA	4 cut(s)	315, 942, 1407, 2760
DriI	GACNNNNNGTC	2 cut(s)	2449, 2977
EaeI	YGGCCR	4 cut(s)	384, 457, 2430, 2737
EagI	CGGCCG	1 cut(s)	384
Eam1104I	CTCTTC	4 cut(s)	27, 277, 1383, 1831
Eam1105I	GACNNNNNGTC	2 cut(s)	2449, 2977
EarI	CTCTTC	4 cut(s)	27, 277, 1383, 1831
EciI	GGCGGA	1 cut(s)	2940
Ecl136II	GAGCTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	384
Eco130I	CCWWGG	5 cut(s)	615, 642, 744, 2521, 2812
Eco147I	AGGCCT	2 cut(s)	353, 1858
Eco24I	GRGCYC	2 cut(s)	22, 2888
Eco31I	GGTCTC	1 cut(s)	2690
Eco32I	GATATC	1 cut(s)	1578
Eco47I	GGWCC	4 cut(s)	2177, 2285, 2355, 3110
Eco52I	CGGCCG	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	297, 582
Eco81I	CCTNAGG	2 cut(s)	1110, 1541
Eco88I	CYCGRG	1 cut(s)	2124
EcoICRI	GAGCTC	1 cut(s)	20
EcoRI	GAATTC	2 cut(s)	494, 1370
EcoRII	CCWGG	3 cut(s)	571, 1252, 1446
EcoRV	GATATC	1 cut(s)	1578
EcoT14I	CCWWGG	5 cut(s)	615, 642, 744, 2521, 2812
EcoT22I	ATGCAT	1 cut(s)	3069
EcoT38I	GRGCYC	2 cut(s)	22, 2888
ErhI	CCWWGG	5 cut(s)	615, 642, 744, 2521, 2812
FalI	AAGNNNNNCTT	4 cut(s)	1212, 1244, 2840, 2872
FaqI	GGGAC	2 cut(s)	1477, 2422
FauNDI	CATATG	1 cut(s)	1051
FblI	GTMKAC	2 cut(s)	267, 750
FokI	GGATG	4 cut(s)	1261, 1887, 2092, 2487
FriOI	GRGCYC	2 cut(s)	22, 2888
FspBI	CTAG	5 cut(s)	417, 1622, 1736, 1835, 1860
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	1 cut(s)	885
GsaI	CCCAGC	1 cut(s)	2868
GsuI	CTGGAG	3 cut(s)	162, 567, 2115
HaeIII	GGCC	8 cut(s)	353, 386, 459, 1596, 1858, 2432, 2727, 2739
HapII	CCGG	4 cut(s)	57, 2701, 2728, 2924
HgaI	GACGC	1 cut(s)	1756
HhaI	GCGC	1 cut(s)	886
Hin1I	GRCGYC	1 cut(s)	1767
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HincII	GTYRAC	2 cut(s)	1075, 2473
HindII	GTYRAC	2 cut(s)	1075, 2473
HindIII	AAGCTT	2 cut(s)	848, 878
HpaII	CCGG	4 cut(s)	57, 2701, 2728, 2924
HphI	GGTGA	8 cut(s)	46, 332, 928, 1127, 1683, 2024, 2416, 3115
Hpy166II	GTNNAC	8 cut(s)	268, 288, 323, 751, 1075, 1180, 1471, 2473
Hpy8I	GTNNAC	8 cut(s)	268, 288, 323, 751, 1075, 1180, 1471, 2473
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	4 cut(s)	973, 1072, 1264, 1948
HpyCH4IV	ACGT	3 cut(s)	1760, 1806, 3129
HpySE526I	ACGT	3 cut(s)	1760, 1806, 3129
Hsp92I	GRCGYC	1 cut(s)	1767
HspAI	GCGC	1 cut(s)	884
KpnI	GGTACC	1 cut(s)	2752
KroI	GCCGGC	1 cut(s)	2727
KroNI	GCCGGC	1 cut(s)	2729
Kzo9I	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	63, 451, 568, 611
Lsp1109I	GCAGC	9 cut(s)	589, 795, 878, 1144, 1368, 1612, 1901, 2107, 2718
LweI	GCATC	7 cut(s)	182, 433, 991, 1239, 2042, 2114, 2362
MaeI	CTAG	5 cut(s)	417, 1622, 1736, 1835, 1860
MaeII	ACGT	3 cut(s)	1760, 1806, 3129
MaeIII	GTNAC	7 cut(s)	1066, 1087, 1643, 1768, 1802, 2213, 2870
MalI	GATC	8 cut(s)	166, 216, 897, 1212, 1415, 2157, 2265, 3189
MboI	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
MfeI	CAATTG	1 cut(s)	1508
MflI	RGATCY	3 cut(s)	164, 2155, 2263
MhlI	GDGCHC	4 cut(s)	22, 290, 2864, 2888
MlsI	TGGCCA	1 cut(s)	2739
MluNI	TGGCCA	1 cut(s)	2739
MlyI	GAGTC	3 cut(s)	2444, 2459, 2837
MmeI	TCCRAC	2 cut(s)	163, 854
Mox20I	TGGCCA	1 cut(s)	2739
Mph1103I	ATGCAT	1 cut(s)	3069
MroNI	GCCGGC	1 cut(s)	2727
MroXI	GAANNNNTTC	1 cut(s)	1227
MscI	TGGCCA	1 cut(s)	2739
MslI	CAYNNNNRTG	2 cut(s)	159, 1789
Msp20I	TGGCCA	1 cut(s)	2739
MspA1I	CMGCKG	2 cut(s)	602, 2868
MspCI	CTTAAG	1 cut(s)	1268
MspI	CCGG	4 cut(s)	57, 2701, 2728, 2924
MspR9I	CCNGG	3 cut(s)	573, 1254, 1448
MunI	CAATTG	1 cut(s)	1508
Mva1269I	GAATGC	3 cut(s)	1020, 2921, 3069
MvaI	CCWGG	3 cut(s)	573, 1254, 1448
MvnI	CGCG	1 cut(s)	13
NaeI	GCCGGC	1 cut(s)	2729
NcoI	CCATGG	1 cut(s)	2812
NdeI	CATATG	1 cut(s)	1051
NdeII	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
NgoMIV	GCCGGC	1 cut(s)	2727
NlaIV	GGNNCC	8 cut(s)	65, 166, 570, 613, 649, 906, 1149, 2750
NmeAIII	GCCGAG	3 cut(s)	362, 1676, 2458
NmuCI	GTSAC	3 cut(s)	1087, 1643, 1768
NsbI	TGCGCA	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	3069
PaeR7I	CTCGAG	1 cut(s)	2124
PagI	TCATGA	1 cut(s)	2326
PceI	AGGCCT	2 cut(s)	353, 1858
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	2916
PctI	GAATGC	3 cut(s)	1020, 2921, 3069
PdiI	GCCGGC	1 cut(s)	2729
PdmI	GAANNNNTTC	1 cut(s)	1227
PfeI	GAWTC	8 cut(s)	233, 1103, 1337, 1432, 1732, 1928, 2512, 2610
PflFI	GACNNNGTC	1 cut(s)	2477
PflMI	CCANNNNNTGG	1 cut(s)	455
PleI	GAGTC	3 cut(s)	2443, 2458, 2836
PpsI	GAGTC	3 cut(s)	2443, 2458, 2836
PshBI	ATTAAT	1 cut(s)	2019
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	3 cut(s)	571, 1252, 1446
PspFI	CCCAGC	1 cut(s)	2864
PspGI	CCWGG	3 cut(s)	571, 1252, 1446
PspN4I	GGNNCC	8 cut(s)	65, 166, 570, 613, 649, 906, 1149, 2750
PspPI	GGNCC	5 cut(s)	1594, 2177, 2285, 2355, 3110
PspXI	VCTCGAGB	1 cut(s)	2124
PstI	CTGCAG	3 cut(s)	706, 868, 1162
PsuI	RGATCY	3 cut(s)	164, 2155, 2263
PsyI	GACNNNGTC	1 cut(s)	2477
PvuII	CAGCTG	1 cut(s)	602
RseI	CAYNNNNRTG	2 cut(s)	159, 1789
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	27
Sau3AI	GATC	8 cut(s)	164, 214, 895, 1210, 1413, 2155, 2263, 3187
Sau96I	GGNCC	5 cut(s)	1594, 2177, 2285, 2355, 3110
ScaI	AGTACT	2 cut(s)	1227, 3056
SchI	GAGTC	3 cut(s)	2444, 2459, 2837
ScrFI	CCNGG	3 cut(s)	573, 1254, 1448
SduI	GDGCHC	4 cut(s)	22, 290, 2864, 2888
SfaNI	GCATC	7 cut(s)	182, 433, 991, 1239, 2042, 2114, 2362
SfcI	CTRYAG	6 cut(s)	237, 702, 864, 1158, 1581, 2307
Sfr274I	CTCGAG	1 cut(s)	2124
SinI	GGWCC	4 cut(s)	2177, 2285, 2355, 3110
SlaI	CTCGAG	1 cut(s)	2124
SmiMI	CAYNNNNRTG	2 cut(s)	159, 1789
SpeI	ACTAGT	1 cut(s)	1834
SseBI	AGGCCT	2 cut(s)	353, 1858
SsiI	CCGC	7 cut(s)	67, 460, 1044, 1886, 2868, 2951, 3178
SspI	AATATT	2 cut(s)	874, 1132
SspMI	CTAG	5 cut(s)	417, 1622, 1736, 1835, 1860
SstI	GAGCTC	1 cut(s)	22
StuI	AGGCCT	2 cut(s)	353, 1858
StyD4I	CCNGG	3 cut(s)	571, 1252, 1446
StyI	CCWWGG	5 cut(s)	615, 642, 744, 2521, 2812
TaaI	ACNGT	4 cut(s)	973, 1072, 1264, 1948
TaiI	ACGT	3 cut(s)	1763, 1809, 3132
TaqI	TCGA	4 cut(s)	1374, 1613, 2125, 3195
TatI	WGTACW	5 cut(s)	585, 1225, 1948, 2995, 3054
TauI	GCSGC	3 cut(s)	69, 462, 1889
TfiI	GAWTC	8 cut(s)	233, 1103, 1337, 1432, 1732, 1928, 2512, 2610
TscAI	CASTG	7 cut(s)	235, 868, 982, 1652, 2404, 2452, 2965
TseFI	GTSAC	3 cut(s)	1087, 1643, 1768
TseI	GCWGC	9 cut(s)	602, 808, 866, 1157, 1356, 1600, 1889, 2120, 2731
Tsp45I	GTSAC	3 cut(s)	1087, 1643, 1768
TspGWI	ACGGA	2 cut(s)	165, 1280
TspRI	CASTG	7 cut(s)	235, 868, 982, 1652, 2404, 2452, 2965
Tth111I	GACNNNGTC	1 cut(s)	2477
Van91I	CCANNNNNTGG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	1268
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	4 cut(s)	2177, 2285, 2355, 3110
VspI	ATTAAT	1 cut(s)	2019
XapI	RAATTY	6 cut(s)	494, 856, 987, 1342, 1370, 2006
XcmI	CCANNNNNNNNNTGG	3 cut(s)	837, 2654, 2810
XhoI	CTCGAG	1 cut(s)	2124
XmiI	GTMKAC	2 cut(s)	267, 750
XmnI	GAANNNNTTC	1 cut(s)	1227
XspI	CTAG	5 cut(s)	417, 1622, 1736, 1835, 1860
ZrmI	AGTACT	2 cut(s)	1227, 3056
Zsp2I	ATGCAT	1 cut(s)	3069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.