Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003815

Physical Location & Seq

Genomic Coordinates Forward (+)

67923838 .. 67926037

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0497400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCAGAAGTTGGAGAAAGCTCTGGTGCAAAGCCCTCTGGTGAAATCTGGGCCAAGCTTGTTCCTTCTGACTCGAGATTTCCGGATGTTGAGATCAGAGATCTTGTTCAAGATACCCCTCAGAGTCAAGATATTGGTTCAGATGAGAGTTTAGTTTGCTCTCCTATTGACAAATGTGAGTGGTGCAGAATTACGAGGAACCCCGATCAGTCTTCTGCCACTATACAAAATAAGAGTTCAAATGCAATACTTGTTGATGGAGCTGCGATCCAATCCGAAGAGAGTACTGTTATCAGATCTGGAAGTGAAATTATTACAGGTCTTGAGAGAGAAGGGTGTTTAAGCTACAGATTCAATGTGTTGCTTGGTCCTGAAACTTGTCAGAAGATGCTGAAGATTAGTGTGGATGCTGAGCATGCAAAGTGCTGCATTTGTTTAAATATATGGCATGATGCTGTTACCATTGCTCCTTGCTTCCATAACTTCTGCAATGGGTGCTTCTCAGAGTGGTTAAGGAGATCACAGGAGAAACGTTCAAGTGTACTCTGTCCCCAATGTCGAGCAGTTGTGCAATTTGTTGGAAGAAACCACTTCCTGCATAACATTGCTGATGAAATACTGAATGCGGATTCTTCACTGAGACGCTCCAACGAAGACACTGCAGTTTTAGATTCCTATGCAACAGTACGATCAAATCTGGTAATAAAGTCGGGAAAAGGGCTGCTTGGGAAAAGGGTTCGTTCAGCAGTGCAAGATGAAGCTGATAGTGTAGAGCTTCCCTGCCCTCAATGCAGTAATCAATTTGGTGGGTTTCTCTGCAACCGAAGCACTACCCATCTGCAATGTCAAGCATGTGGAGGAATGATGCCTTCACGAACCAATACAAGTGTACCTCAACACTGTATAGGGTGTGATAGGTCATTTTGTGGTGCATATTGGCATTCTCAAGGCGTTGCACAAAGTGCTTCTCACCACATATGCAGTCGCGATACTTTCAAACCAATCACAGAACGCACCATCTCTAGAATTCCTACTTCAGCACATGAAAACAATCGCCATGAACAAGAAATCACTATGAGGTGTATTGCACAAATGGGAAGAACATTGCAGGATGTTATTGCAGAATGGATGGTAATGTTCAATAACAGAACAATTGATCGAACTAACAGGATGCCACTGAAGCATGCCGAGCTGATAACTTCTGGGACATATACATGCAGTGATTGTTATGAGAAACTGATCTCATTCCTCTTGTACTGGTTTCGGGTTTCAGTTTCTGCATCTCATCTTCCCCCAGATGCATCAAAAAGGGAAAATTGCTGGTATGGATATGCATGTCGAACACAGCACCATAATGAAGACCATGCTCGTAAAAGGAATCATGTATGCCGGCCGACTAGGGGTGCTAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

471

Amino Acids

52.73

Weight (kDa)

7.2

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	141 - 187	3.5e-07	Ring finger domain
zf-C3HC4_2	PF13923	141 - 186	9.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	142 - 186	2.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-CRD	PF17979	261 - 424	7.3e-48	Cysteine rich domain with multizinc binding regions

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22882 AT1G71360 AT1G71360
fragaria_vesca	FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480 FvH4_2g00480
malus_domestica	MD05G1001800.v1.1 MD10G1003000.v1.1
prunus_persica	Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1 Prupe.8G004700_v2.0.a1
pyrus_communis	pycom05g00200 pycom10g00240
rosa_chinensis	RchiOBHm_Chr6g0250471
rosa_laevigata	RLG00000015538
rosa_multiflora	Rmu_sc0001209.1_g000035
rosa_roxburghii	Rroxscaffold_7G00217210
rosa_rugosa	Rorug05G0497300 Rorug05G0497400 Rorug05G0497400 Rorug05G0497400
rosa_samantha	Rh6AG006100 Rh6BG004600 Rh6CG004300 Rh6DG004200
rosa_wichuraiana	Rw0G015440 Rw6G000660 Rw6G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	987
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	1 cut(s)	626
AclI	AACGTT	1 cut(s)	532
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	1391
AcsI	RAATTY	1 cut(s)	1026
AcuI	CTGAAG	3 cut(s)	413, 1020, 1199
AdeI	CACNNNGTG	1 cut(s)	962
AfaI	GTAC	5 cut(s)	286, 543, 687, 891, 1256
AfiI	CCNNNNNNNGG	1 cut(s)	1400
AgsI	TTSAA	6 cut(s)	110, 240, 355, 537, 997, 1141
AluBI	AGCT	7 cut(s)	21, 58, 263, 345, 761, 775, 1192
AluI	AGCT	7 cut(s)	21, 58, 263, 345, 761, 775, 1192
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	1277
Ama87I	CYCGRG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	51, 1391
ApeKI	GCWGC	3 cut(s)	263, 426, 721
ApoI	RAATTY	1 cut(s)	1026
AspS9I	GGNCC	2 cut(s)	51, 368
AsuHPI	GGTGA	2 cut(s)	53, 962
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	368
BaeI	ACNNNNGTAYC	2 cut(s)	873, 906
BbsI	GAAGAC	3 cut(s)	204, 660, 1365
BbvI	GCAGC	3 cut(s)	250, 413, 708
BccI	CCATC	4 cut(s)	251, 843, 1025, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	2 cut(s)	1023, 1398
BfmI	CTRYAG	2 cut(s)	346, 660
BglII	AGATCT	2 cut(s)	100, 296
BisI	GCNGC	3 cut(s)	264, 427, 722
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	265, 428, 723
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	51, 368
BmiI	GGNNCC	1 cut(s)	200
BmsI	GCATC	8 cut(s)	378, 397, 442, 855, 1161, 1288, 1289, 1310
BpiI	GAAGAC	3 cut(s)	204, 660, 1365
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	344, 930
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	1400
Bse118I	RCCGGY	1 cut(s)	1389
Bse1I	ACTGG	1 cut(s)	1262
Bse3DI	GCAATG	5 cut(s)	462, 496, 603, 848, 1103
BseAI	TCCGGA	1 cut(s)	82
BseGI	GGATG	5 cut(s)	91, 412, 1117, 1134, 1176
BseLI	CCNNNNNNNGG	1 cut(s)	1400
BseMI	GCAATG	5 cut(s)	462, 496, 603, 848, 1103
BseMII	CTCAG	4 cut(s)	134, 402, 516, 629
BseNI	ACTGG	1 cut(s)	1262
BseX3I	CGGCCG	1 cut(s)	1391
BseXI	GCAGC	3 cut(s)	250, 413, 708
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	987
Bsh1285I	CGRYCG	1 cut(s)	1394
BshFI	GGCC	2 cut(s)	53, 1393
BsiEI	CGRYCG	1 cut(s)	1394
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	83, 1390
BslFI	GGGAC	2 cut(s)	534, 1219
BslI	CCNNNNNNNGG	1 cut(s)	1400
BsmAI	GTCTC	1 cut(s)	634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	534, 1219
BsmI	GAATGC	2 cut(s)	628, 940
BsnI	GGCC	2 cut(s)	53, 1393
BsoBI	CYCGRG	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp68I	TCGCGA	1 cut(s)	987
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	2 cut(s)	53, 1393
BspCNI	CTCAG	4 cut(s)	133, 403, 515, 630
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	987
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	262
BsrDI	GCAATG	5 cut(s)	462, 496, 603, 848, 1103
BsrFI	RCCGGY	1 cut(s)	1389
BsrI	ACTGG	1 cut(s)	1262
BssAI	RCCGGY	1 cut(s)	1389
BssMI	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
Bst4CI	ACNGT	3 cut(s)	289, 685, 902
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	2 cut(s)	495, 962
BstC8I	GCNNGC	3 cut(s)	417, 1185, 1391
BstDEI	CTNAG	4 cut(s)	120, 411, 502, 638
BstF5I	GGATG	5 cut(s)	91, 412, 1117, 1134, 1176
BstFNI	CGCG	1 cut(s)	987
BstKTI	GATC	9 cut(s)	96, 103, 208, 270, 299, 521, 692, 1159, 1242
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
BstMCI	CGRYCG	1 cut(s)	1394
BstMWI	GCNNNNNNNGC	7 cut(s)	416, 495, 789, 825, 962, 1180, 1189
BstNSI	RCATGY	5 cut(s)	419, 855, 1187, 1218, 1338
BstSFI	CTRYAG	2 cut(s)	346, 660
BstUI	CGCG	1 cut(s)	987
BstV1I	GCAGC	3 cut(s)	250, 413, 708
BstV2I	GAAGAC	3 cut(s)	204, 660, 1365
BstX2I	RGATCY	2 cut(s)	100, 296
BstYI	RGATCY	2 cut(s)	100, 296
BstZI	CGGCCG	1 cut(s)	1391
BsuRI	GGCC	2 cut(s)	53, 1393
BtsCI	GGATG	5 cut(s)	91, 412, 1117, 1134, 1176
BtsI	GCAGTG	3 cut(s)	657, 753, 1225
BtsIMutI	CAGTG	6 cut(s)	635, 657, 753, 898, 1175, 1225
BtuMI	TCGCGA	1 cut(s)	987
Cac8I	GCNNGC	3 cut(s)	417, 1185, 1391
CaiI	CAGNNNCTG	1 cut(s)	1277
Cfr10I	RCCGGY	1 cut(s)	1389
Cfr13I	GGNCC	2 cut(s)	51, 368
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	5 cut(s)	285, 542, 686, 890, 1255
CviQI	GTAC	5 cut(s)	285, 542, 686, 890, 1255
DdeI	CTNAG	4 cut(s)	120, 411, 502, 638
DpnI	GATC	9 cut(s)	95, 102, 207, 269, 298, 520, 691, 1158, 1241
DpnII	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
DraI	TTTAAA	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	962
EaeI	YGGCCR	1 cut(s)	1391
EagI	CGGCCG	1 cut(s)	1391
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	1391
Eco47I	GGWCC	1 cut(s)	368
Eco52I	CGGCCG	1 cut(s)	1391
Eco57I	CTGAAG	3 cut(s)	413, 1020, 1199
Eco88I	CYCGRG	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	1026
EcoT22I	ATGCAT	2 cut(s)	1303, 1336
Esp3I	CGTCTC	1 cut(s)	634
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	2 cut(s)	534, 1219
FauNDI	CATATG	1 cut(s)	977
Fnu4HI	GCNGC	3 cut(s)	264, 427, 722
FokI	GGATG	5 cut(s)	98, 419, 1124, 1141, 1183
Fsp4HI	GCNGC	3 cut(s)	264, 427, 722
FspBI	CTAG	2 cut(s)	1023, 1398
GluI	GCNGC	3 cut(s)	264, 427, 722
HaeIII	GGCC	2 cut(s)	53, 1393
HapII	CCGG	2 cut(s)	83, 1390
HgaI	GACGC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	6 cut(s)	71, 124, 351, 629, 671, 1378
HpaII	CCGG	2 cut(s)	83, 1390
HphI	GGTGA	2 cut(s)	53, 962
Hpy166II	GTNNAC	2 cut(s)	542, 890
Hpy188I	TCNGA	8 cut(s)	70, 98, 123, 142, 277, 296, 384, 505
Hpy8I	GTNNAC	2 cut(s)	542, 890
HpyAV	CCTTC	3 cut(s)	75, 326, 879
HpyCH4III	ACNGT	3 cut(s)	289, 685, 902
HpyCH4IV	ACGT	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	7 cut(s)	416, 495, 789, 825, 962, 1180, 1189
HpyF3I	CTNAG	4 cut(s)	120, 411, 502, 638
HpySE526I	ACGT	1 cut(s)	532
Kpn2I	TCCGGA	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	1389
KroNI	GCCGGC	1 cut(s)	1391
Kzo9I	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
LmnI	GCTCC	3 cut(s)	260, 472, 650
Lsp1109I	GCAGC	3 cut(s)	250, 413, 708
LweI	GCATC	8 cut(s)	378, 397, 442, 855, 1161, 1288, 1289, 1310
MaeI	CTAG	2 cut(s)	1023, 1398
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	9 cut(s)	95, 102, 207, 269, 298, 520, 691, 1158, 1241
MboI	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
MfeI	CAATTG	1 cut(s)	1152
MflI	RGATCY	2 cut(s)	100, 296
MluCI	AATT	7 cut(s)	189, 309, 572, 800, 1026, 1152, 1315
MlyI	GAGTC	2 cut(s)	65, 133
MmeI	TCCRAC	2 cut(s)	559, 672
MnlI	CCTC	8 cut(s)	46, 129, 189, 795, 851, 903, 1071, 1259
Mph1103I	ATGCAT	2 cut(s)	1303, 1336
MroI	TCCGGA	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	1389
MseI	TTAA	3 cut(s)	341, 437, 512
MslI	CAYNNNNRTG	2 cut(s)	1213, 1353
MspI	CCGG	2 cut(s)	83, 1390
MunI	CAATTG	1 cut(s)	1152
Mva1269I	GAATGC	2 cut(s)	628, 940
MvnI	CGCG	1 cut(s)	987
MwoI	GCNNNNNNNGC	7 cut(s)	416, 495, 789, 825, 962, 1180, 1189
NaeI	GCCGGC	1 cut(s)	1391
NdeI	CATATG	1 cut(s)	977
NdeII	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
NgoMIV	GCCGGC	1 cut(s)	1389
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	1213
NruI	TCGCGA	1 cut(s)	987
NsiI	ATGCAT	2 cut(s)	1303, 1336
NspI	RCATGY	5 cut(s)	419, 855, 1187, 1218, 1338
PaeI	GCATGC	2 cut(s)	419, 1187
PaeR7I	CTCGAG	1 cut(s)	73
PctI	GAATGC	2 cut(s)	628, 940
PdiI	GCCGGC	1 cut(s)	1391
PfeI	GAWTC	4 cut(s)	351, 629, 671, 1378
PkrI	GCNGC	3 cut(s)	265, 428, 723
PleI	GAGTC	2 cut(s)	65, 132
PpsI	GAGTC	2 cut(s)	65, 132
Psp1406I	AACGTT	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	51, 368
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	1277
PsuI	RGATCY	2 cut(s)	100, 296
RruI	TCGCGA	1 cut(s)	987
RsaI	GTAC	5 cut(s)	286, 543, 687, 891, 1256
RsaNI	GTAC	5 cut(s)	285, 542, 686, 890, 1255
RseI	CAYNNNNRTG	2 cut(s)	1213, 1353
SaqAI	TTAA	3 cut(s)	341, 437, 512
SatI	GCNGC	3 cut(s)	264, 427, 722
Sau3AI	GATC	9 cut(s)	93, 100, 205, 267, 296, 518, 689, 1156, 1239
Sau96I	GGNCC	2 cut(s)	51, 368
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	2 cut(s)	65, 133
SfaNI	GCATC	8 cut(s)	378, 397, 442, 855, 1161, 1288, 1289, 1310
SfcI	CTRYAG	2 cut(s)	346, 660
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	1213, 1353
SmlI	CTYRAG	3 cut(s)	73, 323, 945
SmoI	CTYRAG	3 cut(s)	73, 323, 945
SphI	GCATGC	2 cut(s)	419, 1187
Sse9I	AATT	7 cut(s)	189, 309, 572, 800, 1026, 1152, 1315
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	2 cut(s)	1023, 1398
TaaI	ACNGT	3 cut(s)	289, 685, 902
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	4 cut(s)	74, 559, 1159, 1339
TasI	AATT	7 cut(s)	189, 309, 572, 800, 1026, 1152, 1315
TatI	WGTACW	3 cut(s)	284, 541, 1254
TfiI	GAWTC	4 cut(s)	351, 629, 671, 1378
Tru1I	TTAA	3 cut(s)	341, 437, 512
Tru9I	TTAA	3 cut(s)	341, 437, 512
TscAI	CASTG	6 cut(s)	642, 664, 753, 905, 1182, 1225
TseI	GCWGC	3 cut(s)	263, 426, 721
TspDTI	ATGAA	5 cut(s)	627, 771, 1059, 1074, 1371
TspRI	CASTG	6 cut(s)	642, 664, 753, 905, 1182, 1225
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	1026
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	5 cut(s)	419, 855, 1187, 1218, 1338
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	2 cut(s)	1023, 1398
ZrmI	AGTACT	1 cut(s)	286
Zsp2I	ATGCAT	2 cut(s)	1303, 1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.