MD10G1003000.v1.1

Sad1 / UNC-like C-terminal

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
627113 .. 632392
5280 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1003000.v1.1.491

Sequence Viewer

Length: 1839 bp
ATGCAGAGATCACGTAGAGCTCTTCTGAACAGAAGAGCTTTAGGGATCAGTGGAAGGAACCGCTTGTATAAGGTGTCTCTGTCTTTAGTTTTCGTCCTTTGGGGGCTTGTCTTCCTTTTCAGCTTATGGTTCAGTCGTGGACATGGATACAAAGATGGATCCACTGTATCTCCAGTTGGTATATCAACTTGGGATGAAGCTAAGCTGGATCGTGATGAACACTATGATATACAAAAAGAATCTGATTTGGGCTACTCTTCTGGAGGTGAGTGCACAAATGGGGTTGAAACCGGTGGTTTAAATGGTGAGTTCTTTGCTATGGAAGGAAGTAAACAGCATGCCTCTGCTGAAGGAAGTAGACAGCAAGATTTAGCTGAAGGAAGTCTACATCATGCCTCAACTGAAGGAAGTATCTTTCATGACTCAGCTGTGGATGAGCAACCTGAGGTGGTGACTGCTGGTTCAGGTGTAAAACTTGAAAATGATGCTCCAAAGAATGGTCGGTTGCCTCGTGCTGTGCCTCTTGGTCTTGATGAATTCAAGAGCAAAACATTTAGTTCCAAAAGTAAATCTGGAAATGGTCAGGCTGGAGGCATAAAACATAGAGTGGAGCCTGGTGGTGCAGAGTACAATTATGCGTCAGCTGCAAAGGGAGCCAAGGTCTTGGCTTTCAACAAGGAAGCTAAGGGTGCCTCTAATATCTTAGGCAAAGACAAAGACAAGTACCTTCGCAATCCATGTTCTGCAGAAGGAAAGTTTGTCGATATAGAGCTTTCTGAAGAAACCTTGGTAGATACAATTGAAATAGCTAATCTTGAGCACTATTCGTCTAATTTAAAAGATTTTGAGGTGCTCGGCAGTTTGACTTATCCAACAAATGAATGGGTCTTTCTTGGGAATGTTACTGCTGCAAATAATAAACTTGTACAAAGGTTTGTTCTTCAGCAACCCAAGTGGGTGAGATATATAAAGTTGAAACTTTTGAGCCATTATGGTTCAGAATTCTACTGCACACTTAGTATTATTGAACTTTATGGAGTCGATGCTGTTGAGCGAATGCTTGAGGATTTGATTTCTGTTGAAAGCAGTTCGTTTGTTTCTGAGGGAGCAACAGTTGACCAGAAACCTGTACCCTCACACCCGGACTCCCCTGAGGTTGATGAATTTTTTCATGATATTGTTAAAGAATCGGAACCCCAATATGCAGCTGGAGTGTCTAATGTGAATAATGATATGATGAATAGTGAAGTGCCTGATCCTGTCAAAGAAGTTCGTCATCAACAAGTTAATAGGATGCCTGGGGACACAGTTCTGAAAATTTTAATGCAGAAAGTTCGTTCATTAGATTTCAGTTTATCAGTTCTGGAGCGATACCTGGAGGAATCAACTTCAAAATATGGCAGTATTTTTGGAGAATTTGACAAGGATTTGGGAGAGAAAGGTACGGATTTACAGAAGATCAGAGAAGACATAAGGAATCTCGTTCAAAGCCAGGAAGTCATTGCTAAAGATGTTCACAATCTTATATCTTGGCAGTCCCTAGTTACCATGCAATTGAATAATCTAGTCAGGGACAATGCTATCCTCAGATCTGAGGTTGAAAAGGTGAGGGAGAAGCAGATATCTGTAGATAATAAGGGTATCTTAATATTTCTTATATGCATAATATTTTCTTTGTTAGCTCTTGTGAGGCTTTTCACAGAAATGGCGGTTAGTGTTTATATGGTATTGAGTGTTGATAGAGCAACAGAAAAGCCGAGGAAATTTTGTTGGATGAGTTCTTCCTGGCTTTTTTTACTTGTGAGCTGTATCCTTGTCCTGTTTATATTATCATTATAA

Protein Analysis

613

Amino Acids

68.25

Weight (kDa)

5.56

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 225 - 347 2.4e-33 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1837
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 497
AccI GTMKAC 2 cut(s) 358, 385
AciI CCGC 2 cut(s) 61, 1709
AclWI GGATC 5 cut(s) 53, 153, 166, 216, 1250
AcsI RAATTY 6 cut(s) 536, 1001, 1163, 1317, 1415, 1763
AcuI CTGAAG 5 cut(s) 369, 396, 423, 798, 926
AfaI GTAC 5 cut(s) 629, 725, 927, 1131, 1444
AfiI CCNNNNNNNGG 1 cut(s) 497
AgeI ACCGGT 1 cut(s) 290
AjnI CCWGG 5 cut(s) 613, 1297, 1374, 1491, 1784
Alw21I GWGCWC 4 cut(s) 22, 275, 822, 855
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 271
AlwI GGATC 5 cut(s) 53, 153, 166, 216, 1250
ApaLI GTGCAC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 644, 908, 1205
ApoI RAATTY 6 cut(s) 536, 1001, 1163, 1317, 1415, 1763
AsiGI ACCGGT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 1167
AsuC2I CCSGG 1 cut(s) 1142
AsuHPI GGTGA 5 cut(s) 278, 317, 463, 970, 1618
AxyI CCTNAGG 2 cut(s) 444, 1152
BaeGI GKGCMC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 689
BanII GRGCYC 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BauI CACGAG 1 cut(s) 510
BbsI GAAGAC 2 cut(s) 103, 1473
Bbv12I GWGCWC 4 cut(s) 22, 275, 822, 855
BbvI GCAGC 3 cut(s) 631, 895, 1217
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 1316, 1350
BciT130I CCWGG 5 cut(s) 615, 1299, 1376, 1493, 1786
BciVI GTATCC 2 cut(s) 140, 1820
BcnI CCSGG 1 cut(s) 1142
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 1541, 1565
BfmI CTRYAG 2 cut(s) 744, 1626
BfuI GTATCC 2 cut(s) 140, 1820
BglII AGATCT 1 cut(s) 1589
BisI GCNGC 3 cut(s) 645, 909, 1206
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 3 cut(s) 646, 910, 1207
Bme1390I CCNGG 6 cut(s) 615, 1142, 1299, 1376, 1493, 1786
BmiI GGNNCC 6 cut(s) 59, 160, 612, 655, 691, 1194
BmrFI CCNGG 6 cut(s) 615, 1142, 1299, 1376, 1493, 1786
BmsI GCATC 3 cut(s) 475, 1033, 1284
BpiI GAAGAC 2 cut(s) 103, 1473
BpmI CTGGAG 6 cut(s) 156, 282, 609, 1230, 1385, 1397
Bpu10I CCTNAGC 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 836, 1082
BpuMI CCSGG 1 cut(s) 1142
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 657, 786, 1298, 1757
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 8 cut(s) 154, 184, 645, 675, 1098, 1128, 1130, 1160
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 173
Bse21I CCTNAGG 2 cut(s) 444, 1152
Bse3DI GCAATG 1 cut(s) 1500
BseBI CCWGG 5 cut(s) 615, 1299, 1376, 1493, 1786
BseDI CCNNGG 4 cut(s) 657, 786, 1298, 1757
BseGI GGATG 4 cut(s) 199, 439, 1299, 1779
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 1500
BseMII CTCAG 6 cut(s) 435, 438, 1092, 1143, 1584, 1600
BseNI ACTGG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 631, 895, 1217
BsgI GTGCAG 2 cut(s) 642, 994
BshNI GGYRCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 4 cut(s) 22, 275, 822, 855
BsiSI CCGG 2 cut(s) 291, 1142
BslFI GGGAC 3 cut(s) 1316, 1522, 1586
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 3 cut(s) 1316, 1522, 1586
BsmI GAATGC 1 cut(s) 1062
Bsp1286I GDGCHC 4 cut(s) 22, 275, 822, 855
Bsp1407I TGTACA 1 cut(s) 925
Bsp143I GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 61, 1709
BspCNI CTCAG 6 cut(s) 436, 437, 1093, 1144, 1585, 1599
BspHI TCATGA 2 cut(s) 418, 1171
BspLI GGNNCC 6 cut(s) 59, 160, 612, 655, 691, 1194
BspMAI CTGCAG 1 cut(s) 748
BspPI GGATC 5 cut(s) 53, 153, 166, 216, 1250
BspQI GCTCTTC 2 cut(s) 27, 28
BspT107I GGYRCC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 1500
BsrFI RCCGGY 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 925
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 4 cut(s) 657, 786, 1298, 1757
BssMI GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 2 cut(s) 657, 786
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 5 cut(s) 615, 1299, 1376, 1493, 1786
Bst4CI ACNGT 3 cut(s) 166, 1114, 1309
Bst6I CTCTTC 3 cut(s) 27, 28, 262
BstAUI TGTACA 1 cut(s) 925
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 339
BstF5I GGATG 4 cut(s) 199, 439, 1299, 1779
BstKTI GATC 7 cut(s) 11, 48, 161, 211, 1258, 1461, 1592
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
BstMWI GCNNNNNNNGC 3 cut(s) 644, 653, 689
BstNI CCWGG 5 cut(s) 615, 1299, 1376, 1493, 1786
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 6 cut(s) 613, 1140, 1297, 1374, 1491, 1784
BstSFI CTRYAG 2 cut(s) 744, 1626
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 631, 895, 1217
BstV2I GAAGAC 2 cut(s) 103, 1473
BstX2I RGATCY 2 cut(s) 158, 1589
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 2 cut(s) 158, 1589
Bsu36I CCTNAGG 2 cut(s) 444, 1152
BsuI GTATCC 2 cut(s) 140, 1820
BtsCI GGATG 4 cut(s) 199, 439, 1299, 1779
BtsIMutI CAGTG 2 cut(s) 55, 162
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 2 cut(s) 418, 1171
Cfr10I RCCGGY 1 cut(s) 290
CseI GACGC 1 cut(s) 627
Csp6I GTAC 5 cut(s) 628, 724, 926, 1130, 1443
CspAI ACCGGT 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 935, 970
CviAII CATG 7 cut(s) 143, 338, 392, 419, 738, 1172, 1549
CviQI GTAC 5 cut(s) 628, 724, 926, 1130, 1443
DpnI GATC 7 cut(s) 10, 47, 160, 210, 1257, 1460, 1591
DpnII GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
DraI TTTAAA 2 cut(s) 300, 837
Eam1104I CTCTTC 3 cut(s) 27, 28, 262
EarI CTCTTC 3 cut(s) 27, 28, 262
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 657, 786
Eco24I GRGCYC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 1623
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 5 cut(s) 369, 396, 423, 798, 926
Eco81I CCTNAGG 2 cut(s) 444, 1152
EcoICRI GAGCTC 1 cut(s) 20
EcoRI GAATTC 2 cut(s) 536, 1001
EcoRII CCWGG 5 cut(s) 613, 1297, 1374, 1491, 1784
EcoRV GATATC 1 cut(s) 1623
EcoT14I CCWWGG 2 cut(s) 657, 786
EcoT22I ATGCAT 1 cut(s) 1664
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 2 cut(s) 657, 786
FaeI CATG 7 cut(s) 146, 341, 395, 422, 741, 1175, 1552
FalI AAGNNNNNCTT 2 cut(s) 1628, 1660
FaqI GGGAC 3 cut(s) 1316, 1522, 1586
FatI CATG 7 cut(s) 142, 337, 391, 418, 737, 1171, 1548
FblI GTMKAC 2 cut(s) 358, 385
Fnu4HI GCNGC 3 cut(s) 645, 909, 1206
FokI GGATG 4 cut(s) 206, 446, 1306, 1786
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 645, 909, 1206
FspBI CTAG 2 cut(s) 1541, 1565
GluI GCNGC 3 cut(s) 645, 909, 1206
GsuI CTGGAG 6 cut(s) 156, 282, 609, 1230, 1385, 1397
HapII CCGG 2 cut(s) 291, 1142
HgaI GACGC 1 cut(s) 627
Hin1II CATG 7 cut(s) 146, 341, 395, 422, 741, 1175, 1552
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HinfI GANTC 7 cut(s) 239, 422, 1038, 1145, 1187, 1382, 1477
HpaII CCGG 2 cut(s) 291, 1142
HphI GGTGA 5 cut(s) 278, 317, 463, 970, 1618
Hpy166II GTNNAC 7 cut(s) 140, 273, 332, 359, 386, 1117, 1516
Hpy188III TCNNGA 9 cut(s) 212, 261, 419, 530, 541, 573, 815, 1172, 1364
Hpy8I GTNNAC 7 cut(s) 140, 273, 332, 359, 386, 1117, 1516
HpyAV CCTTC 7 cut(s) 48, 317, 344, 371, 398, 737, 743
HpyCH4III ACNGT 3 cut(s) 166, 1114, 1309
HpyCH4IV ACGT 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 653, 689
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 7 cut(s) 146, 341, 395, 422, 741, 1175, 1552
Kzo9I GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
LguI GCTCTTC 2 cut(s) 27, 28
LmnI GCTCC 5 cut(s) 493, 610, 653, 1106, 1366
Lsp1109I GCAGC 3 cut(s) 631, 895, 1217
LweI GCATC 3 cut(s) 475, 1033, 1284
MaeI CTAG 2 cut(s) 1541, 1565
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 3 cut(s) 451, 901, 1543
MalI GATC 7 cut(s) 10, 47, 160, 210, 1257, 1460, 1591
MboI GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
MboII GAAGA 9 cut(s) 14, 45, 103, 249, 791, 932, 1468, 1478, 1773
MfeI CAATTG 2 cut(s) 798, 1553
MflI RGATCY 2 cut(s) 158, 1589
MhlI GDGCHC 4 cut(s) 22, 275, 822, 855
MlyI GAGTC 3 cut(s) 416, 1047, 1139
MmeI TCCRAC 2 cut(s) 896, 1751
Mph1103I ATGCAT 1 cut(s) 1664
MroXI GAANNNNTTC 1 cut(s) 1167
MseI TTAA 6 cut(s) 299, 836, 1182, 1287, 1322, 1646
MslI CAYNNNNRTG 1 cut(s) 1703
MspA1I CMGCKG 3 cut(s) 428, 644, 1208
MspI CCGG 2 cut(s) 291, 1142
MspR9I CCNGG 6 cut(s) 615, 1142, 1299, 1376, 1493, 1786
MunI CAATTG 2 cut(s) 798, 1553
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 5 cut(s) 615, 1299, 1376, 1493, 1786
MwoI GCNNNNNNNGC 3 cut(s) 644, 653, 689
NciI CCSGG 1 cut(s) 1142
NdeII GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
NlaIII CATG 7 cut(s) 146, 341, 395, 422, 741, 1175, 1552
NlaIV GGNNCC 6 cut(s) 59, 160, 612, 655, 691, 1194
NmeAIII GCCGAG 2 cut(s) 834, 1782
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 1664
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 2 cut(s) 418, 1171
PciSI GCTCTTC 2 cut(s) 27, 28
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PctI GAATGC 1 cut(s) 1062
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 4 cut(s) 239, 1187, 1382, 1477
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 3 cut(s) 646, 910, 1207
PleI GAGTC 3 cut(s) 416, 1046, 1139
PpsI GAGTC 3 cut(s) 416, 1046, 1139
Ppu21I YACGTR 1 cut(s) 14
PsiI TTATAA 1 cut(s) 1837
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 5 cut(s) 613, 1297, 1374, 1491, 1784
PspGI CCWGG 5 cut(s) 613, 1297, 1374, 1491, 1784
PspN4I GGNNCC 6 cut(s) 59, 160, 612, 655, 691, 1194
PstI CTGCAG 1 cut(s) 748
PsuI RGATCY 2 cut(s) 158, 1589
PvuII CAGCTG 3 cut(s) 428, 644, 1208
RsaI GTAC 5 cut(s) 629, 725, 927, 1131, 1444
RsaNI GTAC 5 cut(s) 628, 724, 926, 1130, 1443
RseI CAYNNNNRTG 1 cut(s) 1703
SacI GAGCTC 1 cut(s) 22
SapI GCTCTTC 2 cut(s) 27, 28
SaqAI TTAA 6 cut(s) 299, 836, 1182, 1287, 1322, 1646
SatI GCNGC 3 cut(s) 645, 909, 1206
Sau3AI GATC 7 cut(s) 8, 45, 158, 208, 1255, 1458, 1589
SchI GAGTC 3 cut(s) 416, 1047, 1139
ScrFI CCNGG 6 cut(s) 615, 1142, 1299, 1376, 1493, 1786
SduI GDGCHC 4 cut(s) 22, 275, 822, 855
SfaNI GCATC 3 cut(s) 475, 1033, 1284
SfcI CTRYAG 2 cut(s) 744, 1626
SmiMI CAYNNNNRTG 1 cut(s) 1703
SmlI CTYRAG 2 cut(s) 815, 1061
SmoI CTYRAG 2 cut(s) 815, 1061
SphI GCATGC 1 cut(s) 341
SsiI CCGC 2 cut(s) 61, 1709
SspI AATATT 2 cut(s) 1650, 1668
SspMI CTAG 2 cut(s) 1541, 1565
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 6 cut(s) 613, 1140, 1297, 1374, 1491, 1784
StyI CCWWGG 2 cut(s) 657, 786
TaaI ACNGT 3 cut(s) 166, 1114, 1309
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 762, 1041
TatI WGTACW 2 cut(s) 627, 925
TfiI GAWTC 4 cut(s) 239, 1187, 1382, 1477
Tru1I TTAA 6 cut(s) 299, 836, 1182, 1287, 1322, 1646
Tru9I TTAA 6 cut(s) 299, 836, 1182, 1287, 1322, 1646
TscAI CASTG 2 cut(s) 55, 169
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 644, 908, 1205
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 9 cut(s) 210, 231, 407, 549, 894, 1160, 1176, 1253, 1329
TspGWI ACGGA 1 cut(s) 1460
TspRI CASTG 2 cut(s) 55, 169
Van91I CCANNNNNTGG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 271
XapI RAATTY 6 cut(s) 536, 1001, 1163, 1317, 1415, 1763
XceI RCATGY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 2 cut(s) 879, 1205
XmiI GTMKAC 2 cut(s) 358, 385
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 2 cut(s) 1541, 1565
Zsp2I ATGCAT 1 cut(s) 1664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.