AT1G71480

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009015
Physical Location & Seq
Forward (+)
26931852 .. 26933313
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71480.1

Sequence Viewer

Length: 651 bp
ATGAGCTTCACTGCTTCTCTCGTCTCTTATTTGACGTCTCCCTCACTCGTCTCGCTCAACCATCTTCCTCCTTCCTTCTTCCTCCCAACCAAACTTGTCAAGCCAACAAGCCTCACTCATTCACAGCCTCCGAGATTGTCCGCATCCTATGGTCCAGCTGCAAAAGCTGCTACAGCCAACGACGTTGTTCCAGAAACAGCTCCGACATCAGCGTCGGAGGTCGTCTCCAGCTTCTACGCCGCCGTTAACGTCCATGATTTATCCTCTGTCACAGACCTCATCGCTCAGGACTGCGTCTACGAGGATCTCGTCTTCTCATCTCCCTTTGTTGGCCGAAAGGCAATTCTTGATTTCTTCGGAAAATTCATTGAATCAACAAGTACGGATCTCCAATTCGTGATAGATGATATCTCAACAGAAGACTCTTCAGCTGTTGGAGTTTCATGGCATTTAGAATGGAAAGGAAAGAACTTCCCATTTAGCAAAGGTTGCAGCTTTTACCGGTTAGAGGTGATTGATGGGAAGAGACAGATCGTATATGGAAGAGACTGCGTTGAGCCTGCAATCAAACCTGGAGAAACAGTTCTGGCTGCTATAAAGGGAGTTACCTGGCTGCTGCAGAAATTTCCTCAACTGGCCGACCAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

216

Amino Acids

23.52

Weight (kDa)

5.32

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 71 - 190 1.2e-18 Nuclear transport factor 2 (NTF2) domain
SnoaL PF07366 74 - 150 7.3e-06 SnoaL-like polyketide cyclase
SnoaL_2 PF12680 76 - 175 1.1e-14 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 297
AciI CCGC 2 cut(s) 141, 240
AclWI GGATC 2 cut(s) 312, 393
AcoI YGGCCR 2 cut(s) 331, 636
AcsI RAATTY 2 cut(s) 362, 623
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 329, 508
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 2 cut(s) 571, 608
AloI GAACNNNNNNTCC 2 cut(s) 567, 599
AluBI AGCT 7 cut(s) 6, 158, 167, 200, 231, 431, 495
AluI AGCT 7 cut(s) 6, 158, 167, 200, 231, 431, 495
Alw26I GTCTC 6 cut(s) 28, 42, 55, 229, 520, 540
AlwI GGATC 2 cut(s) 312, 393
AoxI GGCC 2 cut(s) 331, 636
ApeKI GCWGC 6 cut(s) 158, 167, 492, 590, 613, 616
ApoI RAATTY 2 cut(s) 362, 623
AsiGI ACCGGT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 304, 426
BbvI GCAGC 6 cut(s) 145, 154, 504, 577, 600, 603
BccI CCATC 2 cut(s) 69, 512
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 573, 610
BcoDI GTCTC 6 cut(s) 28, 42, 55, 229, 520, 540
BfmI CTRYAG 2 cut(s) 171, 617
BisI GCNGC 7 cut(s) 159, 168, 240, 493, 591, 614, 617
BlsI GCNGC 7 cut(s) 160, 169, 241, 494, 592, 615, 618
Bme1390I CCNGG 2 cut(s) 573, 610
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 573, 610
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 2 cut(s) 304, 426
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 2 cut(s) 211, 594
Bpu10I CCTNAGC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 508
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 639
BseBI CCWGG 2 cut(s) 573, 610
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 329, 508
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 639
BseXI GCAGC 6 cut(s) 145, 154, 504, 577, 600, 603
BshFI GGCC 2 cut(s) 333, 638
BshTI ACCGGT 1 cut(s) 501
BsiSI CCGG 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 329, 508
BsmAI GTCTC 6 cut(s) 28, 42, 55, 229, 520, 540
BsmBI CGTCTC 4 cut(s) 28, 42, 55, 229
BsnI GGCC 2 cut(s) 333, 638
Bsp143I GATC 3 cut(s) 304, 385, 531
BspACI CCGC 2 cut(s) 141, 240
BspANI GGCC 2 cut(s) 333, 638
BspCNI CTCAG 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 621
BspPI GGATC 2 cut(s) 312, 393
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 639
BssAI RCCGGY 1 cut(s) 501
BssMI GATC 3 cut(s) 304, 385, 531
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 573, 610
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 3 cut(s) 430, 518, 538
BstACI GRCGYC 1 cut(s) 35
BstAPI GCANNNNNTGC 2 cut(s) 167, 489
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 3 cut(s) 307, 388, 534
BstMAI GTCTC 6 cut(s) 28, 42, 55, 229, 520, 540
BstMBI GATC 3 cut(s) 304, 385, 531
BstMWI GCNNNNNNNGC 4 cut(s) 164, 167, 173, 489
BstNI CCWGG 2 cut(s) 573, 610
BstSCI CCNGG 2 cut(s) 571, 608
BstSFI CTRYAG 2 cut(s) 171, 617
BstV1I GCAGC 6 cut(s) 145, 154, 504, 577, 600, 603
BstV2I GAAGAC 2 cut(s) 304, 426
BstX2I RGATCY 2 cut(s) 304, 385
BstYI RGATCY 2 cut(s) 304, 385
BsuRI GGCC 2 cut(s) 333, 638
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 2 cut(s) 201, 283
Csp6I GTAC 1 cut(s) 381
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 2 cut(s) 254, 444
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 306, 387, 533
DpnII GATC 3 cut(s) 304, 385, 531
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 2 cut(s) 331, 636
Eam1104I CTCTTC 3 cut(s) 430, 518, 538
EarI CTCTTC 3 cut(s) 430, 518, 538
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 571, 608
EcoRV GATATC 1 cut(s) 409
Esp3I CGTCTC 4 cut(s) 28, 42, 55, 229
FaeI CATG 2 cut(s) 257, 447
FaiI YATR 6 cut(s) 150, 255, 445, 538, 540, 596
FatI CATG 2 cut(s) 253, 443
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 7 cut(s) 159, 168, 240, 493, 591, 614, 617
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 7 cut(s) 159, 168, 240, 493, 591, 614, 617
GluI GCNGC 7 cut(s) 159, 168, 240, 493, 591, 614, 617
GsuI CTGGAG 2 cut(s) 211, 594
HaeIII GGCC 2 cut(s) 333, 638
HapII CCGG 1 cut(s) 502
HgaI GACGC 2 cut(s) 201, 283
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 257, 447
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 371, 422
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 502
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 247, 298
Hpy188I TCNGA 5 cut(s) 132, 204, 217, 359, 650
Hpy188III TCNNGA 4 cut(s) 191, 287, 347, 397
Hpy8I GTNNAC 2 cut(s) 247, 298
Hpy99I CGWCG 2 cut(s) 185, 217
HpyAV CCTTC 2 cut(s) 81, 85
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 3 cut(s) 35, 183, 249
HpyCH4V TGCA 4 cut(s) 161, 492, 563, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 167, 173, 489
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 3 cut(s) 35, 183, 249
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 257, 447
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 3 cut(s) 304, 385, 531
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 6 cut(s) 145, 154, 504, 577, 600, 603
LweI GCATC 1 cut(s) 152
MaeII ACGT 3 cut(s) 35, 183, 249
MaeIII GTNAC 2 cut(s) 268, 604
MalI GATC 3 cut(s) 306, 387, 533
MboI GATC 3 cut(s) 304, 385, 531
MboII GAAGA 8 cut(s) 56, 70, 304, 346, 417, 431, 535, 555
MflI RGATCY 2 cut(s) 304, 385
MluCI AATT 5 cut(s) 342, 362, 392, 623, 644
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 195, 227, 415
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 158, 431
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 2 cut(s) 573, 610
MvaI CCWGG 2 cut(s) 573, 610
MwoI GCNNNNNNNGC 4 cut(s) 164, 167, 173, 489
NdeII GATC 3 cut(s) 304, 385, 531
NlaIII CATG 2 cut(s) 257, 447
NmuCI GTSAC 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 371
PflFI GACNNNGTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 7 cut(s) 160, 169, 241, 494, 592, 615, 618
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 571, 608
PspGI CCWGG 2 cut(s) 571, 608
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 621
PsuI RGATCY 2 cut(s) 304, 385
PsyI GACNNNGTC 1 cut(s) 293
PvuII CAGCTG 2 cut(s) 158, 431
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 7 cut(s) 159, 168, 240, 493, 591, 614, 617
Sau3AI GATC 3 cut(s) 304, 385, 531
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 573, 610
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 2 cut(s) 171, 617
SinI GGWCC 1 cut(s) 152
Sse9I AATT 5 cut(s) 342, 362, 392, 623, 644
SsiI CCGC 2 cut(s) 141, 240
StyD4I CCNGG 2 cut(s) 571, 608
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 3 cut(s) 38, 186, 252
TasI AATT 5 cut(s) 342, 362, 392, 623, 644
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 6 cut(s) 158, 167, 492, 590, 613, 616
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 355, 432
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 16
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 362, 623
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 582
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.