Rmu_sc0005937.1_g000001

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005937.1
OG0009015
Physical Location & Seq
Reverse (-)
2 .. 4943
4942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005937.1_g000001.1.cds

Sequence Viewer

Length: 589 bp
atgctgatgataaagccctccgtattttcatctcctctcctaaacgtcaccaaatttcctccctttcaactccccacttccaacgccgcaactggtatcacactatcgaaacggaacccgcagcaggcccttcaatttcgggtgtccacgtcagtcaatccgacggtcgaggttgcaccgtcatccccggctaatgtcgacggtgaagaacccgaatctggagcggacattgtgcggaagttctacgacggaatcaaccgccaggatttggcctcagtggaggagctcatcgccgagaaatgcgtgtacgaggaccttgtgtttcctcggcctttcgttggtcgtaaggatatacttcagttctttagaaagtttaatgattctgtcggcaaagaccttcagtttattattgacgatttatccaccaaggattctacagcagttggggccacatggcatttagaatggaatgggaagcctttcccctttagcaaaggatgtagcttttatcggttggaggtcataaacggcaagagacagattatctatggtcgagatagtgttgaacctgcaatcaagcctggggact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

5.93

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 198
AciI CCGC 5 cut(s) 87, 119, 224, 235, 259
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 2 cut(s) 341, 383
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
AgsI TTSAA 3 cut(s) 68, 134, 566
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 2 cut(s) 261, 580
AluBI AGCT 2 cut(s) 286, 504
AluI AGCT 2 cut(s) 286, 504
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 529
AoxI GGCC 4 cut(s) 126, 270, 329, 447
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 127, 313, 447
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 40, 215
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 2 cut(s) 263, 582
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 2 cut(s) 87, 122
BlsI GCNGC 2 cut(s) 88, 123
Bme1390I CCNGG 3 cut(s) 188, 263, 582
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 127, 313, 447
BmiI GGNNCC 2 cut(s) 116, 448
BmrFI CCNGG 3 cut(s) 188, 263, 582
BpmI CTGGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 186, 326, 426, 581
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 263, 582
BseDI CCNNGG 4 cut(s) 186, 326, 426, 581
BseGI GGATG 2 cut(s) 182, 503
BseLI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 24, 296
BseXI GCAGC 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 4 cut(s) 128, 272, 331, 449
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BsmAI GTCTC 1 cut(s) 529
BsnI GGCC 4 cut(s) 128, 272, 331, 449
Bsp1286I GDGCHC 1 cut(s) 288
BspACI CCGC 5 cut(s) 87, 119, 224, 235, 259
BspANI GGCC 4 cut(s) 128, 272, 331, 449
BspCNI CTCAG 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 116, 448
BspMI ACCTGC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 186, 326, 426, 581
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 263, 582
Bst4CI ACNGT 3 cut(s) 166, 180, 203
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 182, 503
BstMAI GTCTC 1 cut(s) 529
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 2 cut(s) 263, 582
BstSCI CCNGG 3 cut(s) 186, 261, 580
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 128, 272, 331, 449
BtgZI GCGATG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 182, 503
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 127, 313, 447
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 341, 383
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 2 cut(s) 127, 313
EcoRII CCWGG 2 cut(s) 261, 580
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 456
FaiI YATR 4 cut(s) 353, 454, 524, 549
FatI CATG 1 cut(s) 452
FauI CCCGC 1 cut(s) 126
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 87, 122
FokI GGATG 2 cut(s) 169, 510
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 87, 122
GluI GCNGC 2 cut(s) 87, 122
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 4 cut(s) 128, 272, 331, 449
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 456
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 4 cut(s) 215, 252, 380, 431
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 40, 215
Hpy166II GTNNAC 3 cut(s) 147, 199, 307
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 219, 554
Hpy8I GTNNAC 3 cut(s) 147, 199, 307
Hpy99I CGWCG 3 cut(s) 166, 203, 251
HpyAV CCTTC 2 cut(s) 140, 407
HpyCH4III ACNGT 3 cut(s) 166, 180, 203
HpyCH4IV ACGT 2 cut(s) 45, 149
HpyCH4V TGCA 2 cut(s) 176, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 2 cut(s) 45, 149
Hsp92II CATG 1 cut(s) 456
LmnI GCTCC 2 cut(s) 221, 283
LpnPI CCDG 8 cut(s) 78, 110, 201, 204, 248, 275, 567, 582
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 2 cut(s) 45, 149
MaeIII GTNAC 1 cut(s) 46
MbiI CCGCTC 1 cut(s) 224
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 53, 134
MmeI TCCRAC 3 cut(s) 105, 185, 495
MnlI CCTC 9 cut(s) 28, 45, 69, 163, 274, 283, 304, 336, 511
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 1 cut(s) 375
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 188, 263, 582
MvaI CCWGG 2 cut(s) 263, 582
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 1 cut(s) 188
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 2 cut(s) 116, 448
NmeAIII GCCGAG 2 cut(s) 307, 319
NmuCI GTSAC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 215, 252, 380, 431
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 88, 123
PpuMI RGGWCCY 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 261, 580
PspGI CCWGG 2 cut(s) 261, 580
PspN4I GGNNCC 2 cut(s) 116, 448
PspPI GGNCC 3 cut(s) 127, 313, 447
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 87, 122
Sau96I GGNCC 3 cut(s) 127, 313, 447
ScrFI CCNGG 3 cut(s) 188, 263, 582
SduI GDGCHC 1 cut(s) 288
SetI ASST 9 cut(s) 48, 152, 174, 288, 318, 399, 506, 522, 571
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 313
Sse9I AATT 2 cut(s) 53, 134
SsiI CCGC 5 cut(s) 87, 119, 224, 235, 259
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 186, 261, 580
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 166, 180, 203
TaiI ACGT 2 cut(s) 48, 152
TaqI TCGA 4 cut(s) 107, 168, 198, 553
TasI AATT 2 cut(s) 53, 134
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 215, 252, 380, 431
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 3 cut(s) 10, 127, 264
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.