Prupe.1G545800_v2.0.a1

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009015
Physical Location & Seq
Forward (+)
44589122 .. 44593012
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G545800.1

Sequence Viewer

Length: 669 bp
ATGCTGCTGACGATAAACTCTTCAGTCTCCTCCTCCCTCCTCATCAAATCTCCTTCCATTCCAATCACCACTTCCAGCTTCCCCAATTCCAACCCAGCAACTGCCGTCAGAACCCCAAGATGGAACCCGCAGGCTCTTCAATTTCGGGTCTCGTCGTCCGCCAATCAGACAGTCGAGGTTGCATCACCGCCGGAAAATGTCGGTGGAGCTGATTGCGCGACGGAATCTGGAGCGGACATCGTGAGGAAATTCTATGGAGGAATAAACGTCCAGGATTTGGCTTCTGTGGAGGAGCTCATCGCAGAGAAATGTGTGTACGAGGACCTGGTTTTTCCTCGTCCTTTCGTTGGCCGCAAGGATATACTTCAGTTCTTTAAAAAGTTTAACGATTCTGTTGGCAAAGACCTTCAATTTGTTATTGATGATATATCCACGGAGGATTCCGCAGCAGTTGGGGTGACATGGCATTTAGAATGGAATGGGAAGCCTTTTCCCTTTAGCAAAGGATGTAGCTTTTATCGGTTGGAAGTCGTCAATGGCAAGAGACAAATAATCTATGGGCGAGATAGTGTCGAGCCTGCTATCAAGCCTGGGGATACTGTGTTGGTTGCGATCAGAGGTGTGGCTTGGCTTCTTCGACAGTTCCCTCAGCTGGCTGACCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

5.92

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 1 cut(s) 218
AciI CCGC 6 cut(s) 128, 159, 188, 233, 352, 444
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 2 cut(s) 6, 350
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 120, 277, 347, 652
AgeI ACCGGT 1 cut(s) 660
AgsI TTSAA 2 cut(s) 140, 410
AjnI CCWGG 3 cut(s) 270, 324, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 5 cut(s) 78, 209, 295, 513, 652
AluI AGCT 5 cut(s) 78, 209, 295, 513, 652
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 31, 154, 538
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 4, 446
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AsiGI ACCGGT 1 cut(s) 660
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 58, 177, 469
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 458
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 3 cut(s) 272, 326, 591
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 3 cut(s) 31, 154, 538
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 3 cut(s) 5, 352, 447
BlsI GCNGC 3 cut(s) 6, 353, 448
Bme1390I CCNGG 3 cut(s) 272, 326, 591
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 3 cut(s) 272, 326, 591
BmsI GCATC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 432, 590
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 277, 347, 652
Bse118I RCCGGY 1 cut(s) 660
BseBI CCWGG 3 cut(s) 272, 326, 591
BseDI CCNNGG 2 cut(s) 432, 590
BseGI GGATG 1 cut(s) 512
BseLI CCNNNNNNNGG 4 cut(s) 120, 277, 347, 652
BseMII CTCAG 1 cut(s) 662
BseRI GAGGAG 4 cut(s) 19, 22, 29, 305
BseXI GCAGC 1 cut(s) 458
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 351
BshTI ACCGGT 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 191, 661
BslI CCNNNNNNNGG 4 cut(s) 120, 277, 347, 652
BsmAI GTCTC 3 cut(s) 31, 154, 538
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 612
BspACI CCGC 6 cut(s) 128, 159, 188, 233, 352, 444
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 660
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 2 cut(s) 432, 590
BssMI GATC 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 272, 326, 591
Bst4CI ACNGT 3 cut(s) 172, 601, 642
Bst6I CTCTTC 2 cut(s) 25, 141
BstC8I GCNNGC 3 cut(s) 132, 579, 654
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 512
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 615
BstMAI GTCTC 3 cut(s) 31, 154, 538
BstMBI GATC 1 cut(s) 612
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 3 cut(s) 272, 326, 591
BstSCI CCNGG 3 cut(s) 270, 324, 589
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 458
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 512
Cac8I GCNNGC 3 cut(s) 132, 579, 654
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 316
CspAI ACCGGT 1 cut(s) 660
CviAII CATG 1 cut(s) 462
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 648
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 2 cut(s) 25, 141
EarI CTCTTC 2 cut(s) 25, 141
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 6, 350
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 270, 324, 589
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 1 cut(s) 465
FaiI YATR 5 cut(s) 255, 362, 428, 463, 558
FatI CATG 1 cut(s) 461
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 5, 352, 447
FokI GGATG 1 cut(s) 519
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 5, 352, 447
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 5, 352, 447
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 191, 661
HhaI GCGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 465
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 3 cut(s) 224, 389, 440
HpaII CCGG 2 cut(s) 191, 661
HphI GGTGA 3 cut(s) 58, 177, 469
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 110, 168, 617
Hpy188III TCNNGA 2 cut(s) 228, 241
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 157, 223
HpyAV CCTTC 2 cut(s) 63, 416
HpyCH4III ACNGT 3 cut(s) 172, 601, 642
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 465
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 612
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 206, 230, 292
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 1 cut(s) 191
MabI ACCWGGT 1 cut(s) 324
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 457
MalI GATC 1 cut(s) 614
MbiI CCGCTC 1 cut(s) 233
MboI GATC 1 cut(s) 612
MboII GAAGA 3 cut(s) 12, 128, 626
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 4 cut(s) 85, 140, 248, 410
MmeI TCCRAC 2 cut(s) 114, 504
MseI TTAA 3 cut(s) 375, 384, 667
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 2 cut(s) 191, 661
MspR9I CCNGG 3 cut(s) 272, 326, 591
MvaI CCWGG 3 cut(s) 272, 326, 591
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 612
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 224, 389, 440
PflMI CCANNNNNTGG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 270
PinAI ACCGGT 1 cut(s) 660
PkrI GCNGC 3 cut(s) 6, 353, 448
PpuMI RGGWCCY 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 270, 324, 589
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 270, 324, 589
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 375, 384, 667
SatI GCNGC 3 cut(s) 5, 352, 447
Sau3AI GATC 1 cut(s) 612
Sau96I GGNCC 1 cut(s) 322
ScrFI CCNGG 3 cut(s) 272, 326, 591
SduI GDGCHC 1 cut(s) 297
SexAI ACCWGGT 1 cut(s) 324
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 1 cut(s) 322
Sse9I AATT 4 cut(s) 85, 140, 248, 410
SsiI CCGC 6 cut(s) 128, 159, 188, 233, 352, 444
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 270, 324, 589
TaaI ACNGT 3 cut(s) 172, 601, 642
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 174, 573, 637
TasI AATT 4 cut(s) 85, 140, 248, 410
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 3 cut(s) 224, 389, 440
Tru1I TTAA 3 cut(s) 375, 384, 667
Tru9I TTAA 3 cut(s) 375, 384, 667
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 2 cut(s) 4, 446
Tsp45I GTSAC 1 cut(s) 457
TspGWI ACGGA 2 cut(s) 236, 449
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.