Rh7BG396500

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009015
Physical Location & Seq
Reverse (-)
43819869 .. 43826804
6936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG396500.1

Sequence Viewer

Length: 660 bp
ATGCTGATGATAAAGCCCTCCGTATTTTCATCTCCTCTCCTAAACGTCACCAAATCTCCTCCCTTTCAACTCCCCACTTCCAACGCCGCAACTGCTATTACACTATCGACACGGAACCCGCAGCAGGCCCTTCAATTCCGGGTGTCCACGTCAGTCAATCCGACGGTCGAGGTTGCACCATCATCCCCGGCTAATGTCGACGGTGAAGAACCCGAATCTGGAGCGGACATTGTGCGGAAGTTCTACGACGGAATCAACCGCCAGGATTTGGCCTCAGTGGAGGGGCTCATCGCCGACAAATGCGTGTACGAGGACCTTGTGTTTCCTCGGCCTTTCGTTGGTCGTAAGGATATACTTCAGTTCTTTAGAAAGTTTAATGATTCTGTCGGCAAAGACCTTCAGTTTGTTATTGACGATTTATCCACCAAGGATTCTACAGCAGTTGGGGCCACATGGCATTTAGAATGGAATGGGAAGCCTTTCCCCTTTAGCAAAGGATGTAGCTTTTATCGGTTGGAGGTCATAAATGGCAAGAGACAGATTATCTATGGTCGAGATAGTGTTGAACCTGCAATCAAGCCTGGGGACTCTGTGTTGGTAGCTATCAGAGGTGTGACTTGGCTTCTCCGACAATTCCCTCAGCTTGTTGACCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

219

Amino Acids

24.37

Weight (kDa)

7.72

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 76 - 179 5.8e-11 Nuclear transport factor 2 (NTF2) domain
SnoaL_2 PF12680 78 - 173 3.1e-13 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 198
AciI CCGC 5 cut(s) 87, 119, 224, 235, 259
AcuI CTGAAG 2 cut(s) 341, 383
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 68, 134, 566
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 2 cut(s) 261, 580
AluBI AGCT 3 cut(s) 504, 602, 643
AluI AGCT 3 cut(s) 504, 602, 643
Alw26I GTCTC 1 cut(s) 529
AoxI GGCC 4 cut(s) 126, 270, 329, 447
ApeKI GCWGC 1 cut(s) 121
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 127, 313, 447
AsuC2I CCSGG 2 cut(s) 140, 188
AsuHPI GGTGA 2 cut(s) 40, 215
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 263, 582
BcnI CCSGG 2 cut(s) 140, 188
BcoDI GTCTC 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 2 cut(s) 87, 122
BlsI GCNGC 2 cut(s) 88, 123
Bme1390I CCNGG 4 cut(s) 140, 188, 263, 582
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 127, 313, 447
BmiI GGNNCC 2 cut(s) 116, 448
BmrFI CCNGG 4 cut(s) 140, 188, 263, 582
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 639
BpuMI CCSGG 2 cut(s) 140, 188
BsaJI CCNNGG 4 cut(s) 186, 326, 426, 581
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
Bse118I RCCGGY 1 cut(s) 651
BseBI CCWGG 2 cut(s) 263, 582
BseDI CCNNGG 4 cut(s) 186, 326, 426, 581
BseGI GGATG 2 cut(s) 182, 503
BseLI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BseMII CTCAG 2 cut(s) 288, 653
BseRI GAGGAG 2 cut(s) 24, 48
BseXI GCAGC 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 4 cut(s) 128, 272, 331, 449
BshTI ACCGGT 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 3 cut(s) 139, 188, 652
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 4 cut(s) 128, 272, 331, 449
Bsp1286I GDGCHC 1 cut(s) 288
BspACI CCGC 5 cut(s) 87, 119, 224, 235, 259
BspANI GGCC 4 cut(s) 128, 272, 331, 449
BspCNI CTCAG 2 cut(s) 287, 652
BspLI GGNNCC 2 cut(s) 116, 448
BspMI ACCTGC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 186, 326, 426, 581
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 263, 582
Bst4CI ACNGT 2 cut(s) 166, 203
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 274, 639
BstF5I GGATG 2 cut(s) 182, 503
BstMAI GTCTC 1 cut(s) 529
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 92, 446
BstNI CCWGG 2 cut(s) 263, 582
BstSCI CCNGG 4 cut(s) 138, 186, 261, 580
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 128, 272, 331, 449
BtgZI GCGATG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 182, 503
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 127, 313, 447
Csp6I GTAC 1 cut(s) 307
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 274, 639
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 341, 383
EcoO109I RGGNCCY 2 cut(s) 127, 313
EcoRII CCWGG 2 cut(s) 261, 580
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 456
FaiI YATR 4 cut(s) 353, 454, 524, 549
FaqI GGGAC 1 cut(s) 599
FatI CATG 1 cut(s) 452
FauI CCCGC 1 cut(s) 126
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 87, 122
FokI GGATG 2 cut(s) 169, 510
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 87, 122
GluI GCNGC 2 cut(s) 87, 122
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 4 cut(s) 128, 272, 331, 449
HapII CCGG 3 cut(s) 139, 188, 652
Hin1II CATG 1 cut(s) 456
HincII GTYRAC 2 cut(s) 199, 649
HindII GTYRAC 2 cut(s) 199, 649
HinfI GANTC 5 cut(s) 215, 252, 380, 431, 587
HpaII CCGG 3 cut(s) 139, 188, 652
HphI GGTGA 2 cut(s) 40, 215
Hpy166II GTNNAC 4 cut(s) 147, 199, 307, 649
Hpy188I TCNGA 3 cut(s) 162, 608, 629
Hpy188III TCNNGA 2 cut(s) 219, 554
Hpy8I GTNNAC 4 cut(s) 147, 199, 307, 649
Hpy99I CGWCG 3 cut(s) 166, 203, 251
HpyAV CCTTC 2 cut(s) 140, 407
HpyCH4III ACNGT 2 cut(s) 166, 203
HpyCH4IV ACGT 2 cut(s) 45, 149
HpyCH4V TGCA 2 cut(s) 176, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 446
HpyF3I CTNAG 2 cut(s) 274, 639
HpySE526I ACGT 2 cut(s) 45, 149
Hsp92II CATG 1 cut(s) 456
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 9 cut(s) 110, 152, 201, 204, 248, 275, 567, 582, 594
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 2 cut(s) 45, 149
MaeIII GTNAC 2 cut(s) 46, 613
MbiI CCGCTC 1 cut(s) 224
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 134, 632
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 4 cut(s) 105, 185, 495, 652
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 375, 658
MspI CCGG 3 cut(s) 139, 188, 652
MspR9I CCNGG 4 cut(s) 140, 188, 263, 582
MvaI CCWGG 2 cut(s) 263, 582
MwoI GCNNNNNNNGC 2 cut(s) 92, 446
NciI CCSGG 2 cut(s) 140, 188
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 2 cut(s) 116, 448
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 46, 613
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 215, 252, 380, 431
PflMI CCANNNNNTGG 1 cut(s) 268
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 2 cut(s) 88, 123
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 261, 580
PspGI CCWGG 2 cut(s) 261, 580
PspN4I GGNNCC 2 cut(s) 116, 448
PspPI GGNCC 3 cut(s) 127, 313, 447
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 375, 658
SatI GCNGC 2 cut(s) 87, 122
Sau96I GGNCC 3 cut(s) 127, 313, 447
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 4 cut(s) 140, 188, 263, 582
SduI GDGCHC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 313
Sse9I AATT 2 cut(s) 134, 632
SsiI CCGC 5 cut(s) 87, 119, 224, 235, 259
StyD4I CCNGG 4 cut(s) 138, 186, 261, 580
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 166, 203
TaiI ACGT 2 cut(s) 48, 152
TaqI TCGA 4 cut(s) 107, 168, 198, 553
TasI AATT 2 cut(s) 134, 632
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 215, 252, 380, 431
Tru1I TTAA 2 cut(s) 375, 658
Tru9I TTAA 2 cut(s) 375, 658
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 46, 613
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 2 cut(s) 46, 613
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 3 cut(s) 10, 127, 264
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.