MD08G1213700.v1.1

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0009015
Physical Location & Seq
Forward (+)
27682336 .. 27684773
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1213700.v1.1.491

Sequence Viewer

Length: 699 bp
ATGCTGATGATAAACTCCTTATTCCTCTCATCTTCTTCGTCTCCTCGTCTCCTTCTTAACCACACCAAATCTCCTTCCATTCCAATCACCACTTCCAACCTCCCCATATCCAATCCAGCAACTGCTATCAGCACACCACTGAGATGGACCCCGCAGACCCTTCAGTTTCGGGCCTCATCGTCATCAGCCAATCCGACAGTCGAGGTTGCATCACCGCCGGGAACTGATGGCGATGAGTCAGCTGATGTGGTGGAATCTGGAGCGGACGTTGTGAGGAAGTTCTACGCGGGAGTCAACCGCCAAGATTTGGGTTCAGTGGAGGGGCTCATAGCAGAGAAATGTGTGTACGAGGACCTTGTTTTTCCTCGTCCTTTCATTGGTCGCAAGGATATACTTCAATTCTTCAAAAAGTTCAATGATTCTGTCGGCAAAGACCTTAAGTTTGTTATTGACGACTTATCCGCTGAGGACTCCACGGCAGTTGGGGTAACATGGCATTTAGAATGGAATGGGAAGCCTTTTCCCTTCAGCAAAGGATGTAGCTTTTATAAGTTGGAGGTCATCGATGGCAAGAGACAAATAATCTACGGGCGAGATAGTGTCGAACCTGCGATCAAGCCTGGAGAAACTGTGTTGATTGCCATCAGAGGTGTGGCATGGCTTCTACGACAATTCCCTCAGCTGATCGACCAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

233

Amino Acids

25.52

Weight (kDa)

5.76

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 88 - 192 8.8e-11 Nuclear transport factor 2 (NTF2) domain
SnoaL PF07366 90 - 166 7e-06 SnoaL-like polyketide cyclase
SnoaL_2 PF12680 91 - 191 1.5e-12 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 263
AccII CGCG 1 cut(s) 287
AciI CCGC 6 cut(s) 152, 215, 263, 287, 298, 462
AcuI CTGAAG 2 cut(s) 146, 511
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 307, 377
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 3 cut(s) 398, 406, 415
AjnI CCWGG 1 cut(s) 619
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 3 cut(s) 242, 543, 682
AluI AGCT 3 cut(s) 242, 543, 682
Alw26I GTCTC 3 cut(s) 45, 53, 568
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspS9I GGNCC 3 cut(s) 147, 171, 352
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 79, 204
AvaII GGWCC 2 cut(s) 147, 352
BanII GRGCYC 1 cut(s) 327
BbvCI CCTCAGC 2 cut(s) 465, 678
BccI CCATC 4 cut(s) 138, 221, 560, 650
BceAI ACGGC 1 cut(s) 492
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 3 cut(s) 45, 53, 568
BfrI CTTAAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 616
Bme1390I CCNGG 2 cut(s) 219, 621
Bme18I GGWCC 2 cut(s) 147, 352
BmgT120I GGNCC 3 cut(s) 147, 171, 352
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 219, 621
BmsI GCATC 1 cut(s) 218
BpmI CTGGAG 2 cut(s) 279, 642
Bpu10I CCTNAGC 2 cut(s) 465, 678
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 474
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 252, 282, 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 377
Bse8I GATNNNNATC 1 cut(s) 641
BseBI CCWGG 1 cut(s) 621
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 542
BseJI GATNNNNATC 1 cut(s) 641
BseLI CCNNNNNNNGG 2 cut(s) 307, 377
BseMII CTCAG 3 cut(s) 131, 456, 692
BseRI GAGGAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 564
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 307, 377
BsmAI GTCTC 3 cut(s) 45, 53, 568
BsmBI CGTCTC 2 cut(s) 45, 53
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 612, 684
BspACI CCGC 6 cut(s) 152, 215, 263, 287, 298, 462
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 132, 457, 691
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 2 cut(s) 612, 684
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 199, 631
BstAFI CTTAAG 1 cut(s) 437
BstDEI CTNAG 3 cut(s) 140, 465, 678
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 542
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 2 cut(s) 615, 687
BstMAI GTCTC 3 cut(s) 45, 53, 568
BstMBI GATC 2 cut(s) 612, 684
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 217, 619
BstUI CGCG 1 cut(s) 287
BstXI CCANNNNNNTGG 1 cut(s) 144
Bsu15I ATCGAT 1 cut(s) 564
BsuRI GGCC 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 137, 321
BveI ACCTGC 1 cut(s) 616
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 147, 171, 352
ClaI ATCGAT 1 cut(s) 564
Csp6I GTAC 1 cut(s) 346
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 2 cut(s) 492, 657
CviJI RGCY 9 cut(s) 173, 188, 242, 325, 517, 543, 619, 661, 682
CviKI_1 RGCY 9 cut(s) 173, 188, 242, 325, 517, 543, 619, 661, 682
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 140, 465, 678
DpnI GATC 2 cut(s) 614, 686
DpnII GATC 2 cut(s) 612, 684
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 147, 352
Eco57I CTGAAG 2 cut(s) 146, 511
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 327
Esp3I CGTCTC 2 cut(s) 45, 53
FaeI CATG 2 cut(s) 495, 660
FaiI YATR 6 cut(s) 107, 329, 392, 493, 549, 658
FatI CATG 2 cut(s) 491, 656
FauI CCCGC 2 cut(s) 159, 280
FokI GGATG 1 cut(s) 549
FriOI GRGCYC 1 cut(s) 327
GsuI CTGGAG 2 cut(s) 279, 642
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 218
Hin1II CATG 2 cut(s) 495, 660
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 236, 254, 291, 419, 470
HpaII CCGG 1 cut(s) 218
HphI GGTGA 2 cut(s) 79, 204
Hpy166II GTNNAC 2 cut(s) 295, 346
Hpy188I TCNGA 2 cut(s) 195, 647
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 295, 346
HpyAV CCTTC 4 cut(s) 62, 84, 170, 535
HpyCH4III ACNGT 2 cut(s) 199, 631
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 3 cut(s) 140, 465, 678
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 495, 660
Kzo9I GATC 2 cut(s) 612, 684
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 129, 231, 243, 606, 621, 633
LweI GCATC 1 cut(s) 218
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 487
MalI GATC 2 cut(s) 614, 686
MbiI CCGCTC 1 cut(s) 263
MboI GATC 2 cut(s) 612, 684
MboII GAAGA 3 cut(s) 24, 27, 394
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 2 cut(s) 398, 671
MlyI GAGTC 3 cut(s) 245, 300, 464
MmeI TCCRAC 3 cut(s) 120, 218, 534
MseI TTAA 2 cut(s) 57, 438
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 3 cut(s) 242, 464, 682
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 219, 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 1 cut(s) 287
NciI CCSGG 1 cut(s) 219
NdeII GATC 2 cut(s) 612, 684
NlaIII CATG 2 cut(s) 495, 660
NlaIV GGNNCC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 254, 419
PflMI CCANNNNNTGG 1 cut(s) 307
PleI GAGTC 3 cut(s) 244, 299, 464
PpsI GAGTC 3 cut(s) 244, 299, 464
PpuMI RGGWCCY 1 cut(s) 352
PsiI TTATAA 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 3 cut(s) 147, 171, 352
PspPPI RGGWCCY 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 242, 682
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 57, 438
Sau3AI GATC 2 cut(s) 612, 684
Sau96I GGNCC 3 cut(s) 147, 171, 352
SchI GAGTC 3 cut(s) 245, 300, 464
ScrFI CCNGG 2 cut(s) 219, 621
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 2 cut(s) 147, 352
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 398, 671
SsiI CCGC 6 cut(s) 152, 215, 263, 287, 298, 462
StyD4I CCNGG 2 cut(s) 217, 619
TaaI ACNGT 2 cut(s) 199, 631
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 201, 564, 603, 687
TasI AATT 2 cut(s) 398, 671
TfiI GAWTC 2 cut(s) 254, 419
Tru1I TTAA 2 cut(s) 57, 438
Tru9I TTAA 2 cut(s) 57, 438
TscAI CASTG 2 cut(s) 144, 321
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 2 cut(s) 144, 321
Van91I CCANNNNNTGG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 147, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.