RLG00000001407

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009015
Physical Location & Seq
Forward (+)
15222909 .. 15228124
5216 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001407

Sequence Viewer

Length: 660 bp
ATGCTGATGATAAAGCCCTCCGTATTTTCATCTCCTCTCCTAAACGTCACCAAATCTCCTCCCTTTCAACTCCCCGCTTCCAACGCCGCAACTGCTATTACACTATCGACACGGAGCCCACAGCAGGCCCTTCAATTTCGGGTGTCCACGTCAGTCAATCCGACGGTCGAGGTTGCACCATCATCCCCGGCTAATGTCGACGGTGAAGAACCCGAATCAGGAGCGGACATTGTGCGGAAGTTCTACGACGGAATCAACCGCCAGGATTTGGCCTCAGTGGAGGAGCTCATCGCCGAGAAATGCGTGTACGAGGACCTTGTGTTTCCTCGGCCTTTTGTTGGCCGTAAGGATATACTTCAGTTCTTTAGAAAGTTTAATGATTCTGTCGGCAAAGACCTTCAGTTTGTTATTGACGATTTATCCACCAAGGATTCTACAGCAGTTGGGGCCACATGGCATTTAGAATGGAATGGGAAGCCTTTCCCCTTTAGCAAAGGATGTAGCTTTTATCGGTTGGAGATCATAAATGGCAAGAGACAGATTATCTATGGTCGAGATAGTGTTGAACCTGCAATCAAGCCTGGGGACTCTGTGTTGGTAGCTATCAGAGGTGTGGCTTGGCTTCTTCGACAATTCCCTCAGCTTGTTGACCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

220

Amino Acids

24.38

Weight (kDa)

6.61

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 76 - 179 4.4e-11 Nuclear transport factor 2 (NTF2) domain
SnoaL PF07366 77 - 153 3e-06 SnoaL-like polyketide cyclase
SnoaL_2 PF12680 78 - 173 7e-14 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 198
AciI CCGC 5 cut(s) 75, 87, 224, 235, 259
AcoI YGGCCR 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 341, 383
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 68, 134, 566
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 2 cut(s) 261, 580
AluBI AGCT 4 cut(s) 286, 504, 602, 643
AluI AGCT 4 cut(s) 286, 504, 602, 643
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 529
AoxI GGCC 5 cut(s) 126, 270, 329, 340, 447
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 127, 313, 447
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 40, 215
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 2 cut(s) 119, 288
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 639
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 263, 582
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 188, 263, 582
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 127, 313, 447
BmiI GGNNCC 2 cut(s) 116, 448
BmrFI CCNGG 3 cut(s) 188, 263, 582
Bpu10I CCTNAGC 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 186, 326, 426, 581
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
Bse118I RCCGGY 1 cut(s) 651
BseBI CCWGG 2 cut(s) 263, 582
BseDI CCNNGG 4 cut(s) 186, 326, 426, 581
BseGI GGATG 2 cut(s) 182, 503
BseLI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BseMII CTCAG 2 cut(s) 288, 653
BseRI GAGGAG 3 cut(s) 24, 48, 296
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 5 cut(s) 128, 272, 331, 342, 449
BshTI ACCGGT 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 188, 652
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 4 cut(s) 124, 218, 268, 338
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 5 cut(s) 128, 272, 331, 342, 449
Bsp1286I GDGCHC 2 cut(s) 119, 288
Bsp143I GATC 1 cut(s) 519
BspACI CCGC 5 cut(s) 75, 87, 224, 235, 259
BspANI GGCC 5 cut(s) 128, 272, 331, 342, 449
BspCNI CTCAG 2 cut(s) 287, 652
BspLI GGNNCC 2 cut(s) 116, 448
BspMI ACCTGC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 186, 326, 426, 581
BssMI GATC 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 263, 582
Bst4CI ACNGT 2 cut(s) 166, 203
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 274, 639
BstF5I GGATG 2 cut(s) 182, 503
BstKTI GATC 1 cut(s) 522
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 1 cut(s) 519
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 83, 92, 446
BstNI CCWGG 2 cut(s) 263, 582
BstSCI CCNGG 3 cut(s) 186, 261, 580
BstSFI CTRYAG 1 cut(s) 435
BsuRI GGCC 5 cut(s) 128, 272, 331, 342, 449
BtgZI GCGATG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 182, 503
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 127, 313, 447
Csp6I GTAC 1 cut(s) 307
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 274, 639
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 119, 288
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 341, 383
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 2 cut(s) 127, 313
EcoRII CCWGG 2 cut(s) 261, 580
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 119, 288
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 456
FaiI YATR 4 cut(s) 353, 454, 524, 549
FaqI GGGAC 1 cut(s) 599
FatI CATG 1 cut(s) 452
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 2 cut(s) 169, 510
FriOI GRGCYC 2 cut(s) 119, 288
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 5 cut(s) 128, 272, 331, 342, 449
HapII CCGG 2 cut(s) 188, 652
Hin1II CATG 1 cut(s) 456
HincII GTYRAC 2 cut(s) 199, 649
HindII GTYRAC 2 cut(s) 199, 649
HinfI GANTC 5 cut(s) 215, 252, 380, 431, 587
HpaII CCGG 2 cut(s) 188, 652
HphI GGTGA 2 cut(s) 40, 215
Hpy166II GTNNAC 4 cut(s) 147, 199, 307, 649
Hpy188I TCNGA 2 cut(s) 162, 608
Hpy188III TCNNGA 2 cut(s) 219, 554
Hpy8I GTNNAC 4 cut(s) 147, 199, 307, 649
Hpy99I CGWCG 3 cut(s) 166, 203, 251
HpyAV CCTTC 2 cut(s) 140, 407
HpyCH4III ACNGT 2 cut(s) 166, 203
HpyCH4IV ACGT 2 cut(s) 45, 149
HpyCH4V TGCA 2 cut(s) 176, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 92, 446
HpyF3I CTNAG 2 cut(s) 274, 639
HpySE526I ACGT 2 cut(s) 45, 149
Hsp92II CATG 1 cut(s) 456
Kzo9I GATC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 114, 221, 283
LpnPI CCDG 8 cut(s) 110, 201, 204, 248, 275, 567, 582, 594
MaeII ACGT 2 cut(s) 45, 149
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 521
MbiI CCGCTC 1 cut(s) 224
MboI GATC 1 cut(s) 519
MboII GAAGA 2 cut(s) 218, 617
MhlI GDGCHC 2 cut(s) 119, 288
MluCI AATT 2 cut(s) 134, 632
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 3 cut(s) 105, 185, 495
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 375, 658
MspI CCGG 2 cut(s) 188, 652
MspR9I CCNGG 3 cut(s) 188, 263, 582
MvaI CCWGG 2 cut(s) 263, 582
MwoI GCNNNNNNNGC 3 cut(s) 83, 92, 446
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 519
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 2 cut(s) 116, 448
NmeAIII GCCGAG 2 cut(s) 307, 319
NmuCI GTSAC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 215, 252, 380, 431
PflMI CCANNNNNTGG 1 cut(s) 268
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 261, 580
PspGI CCWGG 2 cut(s) 261, 580
PspN4I GGNNCC 2 cut(s) 116, 448
PspPI GGNCC 3 cut(s) 127, 313, 447
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 375, 658
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 3 cut(s) 127, 313, 447
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 3 cut(s) 188, 263, 582
SduI GDGCHC 2 cut(s) 119, 288
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 313
Sse9I AATT 2 cut(s) 134, 632
SsiI CCGC 5 cut(s) 75, 87, 224, 235, 259
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 186, 261, 580
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 166, 203
TaiI ACGT 2 cut(s) 48, 152
TaqI TCGA 5 cut(s) 107, 168, 198, 553, 628
TasI AATT 2 cut(s) 134, 632
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 215, 252, 380, 431
Tru1I TTAA 2 cut(s) 375, 658
Tru9I TTAA 2 cut(s) 375, 658
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 3 cut(s) 10, 127, 264
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.