FvH4_5g33211

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009015
Physical Location & Seq
Reverse (-)
24009537 .. 24013383
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33211.t4

Sequence Viewer

Length: 630 bp
ATGCTGATGATAAAGCCCGCCGTATTTCCATCACCACCTCTCCTCCTAAACGTCACCAAGTCGTCTCCTCCCTTTCAATTCCCCACTTCCAACGCCGCTACACTCTCCACGCAGTCCCTTAAGTTTCGGGTGTCCTCGTCTCCCAATCCAACCGTCGAGGTTGCACCGTCGAATATCGACGCTGAAGAAGAACTCGAATCCGGAGCGGACATTGTGCGCAAGTTCTACGACGGAATCAACCGCCAGGATTTGACCTCCGTGGAGGAGCTCATCGCCGAGAAATGTGTATACGAGGACCTCGTGTTTCCTCAGCCTTTCGTTGGTCGTAAGTTCTTTAGAAAGTTCAATGATTCTGTTGGCAAAGACCTTCAGTTCGTTATTGATGATTTATCTACCAATGATTCTACAGCAGTTGGGGCCACATGGCATTTAGAGTGGAATGGGAAGCCTTTCCCCTTTAGCAAAGGATGTAGCTTCTATCGGTTGGAGGTCATAAATGGCAAGAGACAGATTATCTATGGTCGAGATAGTGTTGAACCTGCAATCAAGCCTGGGGACTCTGTGCTGGTAGCTATCAGAGGTGTGGCTTGGCTACTTCGACAATTCCCTCAGCTGGTGGACCGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2 SnoaL_2

Protein Analysis

210

Amino Acids

23.4

Weight (kDa)

5.55

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 70 - 173 2.5e-11 Nuclear transport factor 2 (NTF2) domain
SnoaL PF07366 71 - 147 4.2e-06 SnoaL-like polyketide cyclase
SnoaL_2 PF12680 72 - 167 6.3e-14 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71480 AT1G71480 AT1G71480
fragaria_vesca FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211 FvH4_5g33211
malus_domestica MD08G1213700.v1.1
prunus_persica Prupe.1G545800_v2.0.a1
pyrus_communis pycom08g18350
rosa_chinensis RchiOBHm_Chr7g0231601
rosa_laevigata RLG00000001407
rosa_multiflora Rmu_sc0005937.1_g000001
rosa_roxburghii Rroxscaffold_3G00229060
rosa_rugosa Rorug07G0267400 Rorug07G0267500
rosa_samantha Rh7AG422200 Rh7BG396500 Rh7CG442400 Rh7DG414500
rosa_wichuraiana Rw7G034810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 4 cut(s) 18, 96, 206, 241
AcuI CTGAAG 2 cut(s) 204, 353
AfiI CCNNNNNNNGG 2 cut(s) 320, 613
AflII CTTAAG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 621
AgsI TTSAA 3 cut(s) 77, 346, 536
AjnI CCWGG 2 cut(s) 243, 550
AluBI AGCT 4 cut(s) 268, 474, 572, 613
AluI AGCT 4 cut(s) 268, 474, 572, 613
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 3 cut(s) 69, 144, 499
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 295, 417, 619
AsuHPI GGTGA 2 cut(s) 24, 46
AvaII GGWCC 2 cut(s) 295, 619
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 270
BbvCI CCTCAGC 2 cut(s) 309, 609
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 245, 552
BcoDI GTCTC 3 cut(s) 69, 144, 499
BfmI CTRYAG 1 cut(s) 405
BfrI CTTAAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 547
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 245, 552
Bme18I GGWCC 2 cut(s) 295, 619
BmgT120I GGNCC 3 cut(s) 295, 417, 619
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 245, 552
Bpu10I CCTNAGC 2 cut(s) 309, 609
BsaJI CCNNGG 2 cut(s) 258, 551
BsaWI WCCGGW 2 cut(s) 200, 621
BsaXI ACNNNNNCTCC 4 cut(s) 24, 27, 54, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 613
Bse118I RCCGGY 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 2 cut(s) 245, 552
BseDI CCNNGG 2 cut(s) 258, 551
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 2 cut(s) 320, 613
BseMII CTCAG 2 cut(s) 323, 623
BseRI GAGGAG 3 cut(s) 32, 57, 278
BshFI GGCC 1 cut(s) 419
BshTI ACCGGT 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 201, 622
BslFI GGGAC 2 cut(s) 100, 569
BslI CCNNNNNNNGG 2 cut(s) 320, 613
BsmAI GTCTC 3 cut(s) 69, 144, 499
BsmBI CGTCTC 2 cut(s) 69, 144
BsmFI GGGAC 2 cut(s) 100, 569
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 200
BspACI CCGC 4 cut(s) 18, 96, 206, 241
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 322, 622
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 621
BssAI RCCGGY 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 258, 551
BssNAI GTATAC 1 cut(s) 289
BssSI CACGAG 1 cut(s) 299
Bst1107I GTATAC 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 245, 552
Bst4CI ACNGT 2 cut(s) 154, 168
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 309, 609
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 473
BstHHI GCGC 1 cut(s) 219
BstMAI GTCTC 3 cut(s) 69, 144, 499
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 2 cut(s) 245, 552
BstSCI CCNGG 2 cut(s) 243, 550
BstSFI CTRYAG 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 473
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 621
Cfr13I GGNCC 3 cut(s) 295, 417, 619
CseI GACGC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 621
CviAII CATG 1 cut(s) 423
DdeI CTNAG 2 cut(s) 309, 609
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 295, 619
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 204, 353
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 243, 550
EcoT38I GRGCYC 1 cut(s) 270
Esp3I CGTCTC 2 cut(s) 69, 144
FaeI CATG 1 cut(s) 426
FaiI YATR 4 cut(s) 289, 424, 494, 519
FaqI GGGAC 2 cut(s) 100, 569
FatI CATG 1 cut(s) 422
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 480
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 96
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 201, 622
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 426
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 5 cut(s) 197, 234, 350, 401, 557
HpaII CCGG 2 cut(s) 201, 622
HphI GGTGA 2 cut(s) 24, 46
Hpy166II GTNNAC 2 cut(s) 289, 619
Hpy188I TCNGA 1 cut(s) 578
Hpy188III TCNNGA 2 cut(s) 201, 524
Hpy8I GTNNAC 2 cut(s) 289, 619
Hpy99I CGWCG 4 cut(s) 158, 172, 182, 233
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 154, 168
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 164, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 309, 609
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 426
HspAI GCGC 1 cut(s) 217
Kpn2I TCCGGA 1 cut(s) 200
LmnI GCTCC 2 cut(s) 203, 265
LpnPI CCDG 8 cut(s) 214, 230, 257, 537, 551, 552, 564, 599
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MbiI CCGCTC 1 cut(s) 206
MboII GAAGA 2 cut(s) 197, 200
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 77, 602
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 3 cut(s) 114, 173, 465
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 613
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 2 cut(s) 201, 622
MspR9I CCNGG 2 cut(s) 245, 552
MvaI CCWGG 2 cut(s) 245, 552
MwoI GCNNNNNNNGC 1 cut(s) 416
NlaIII CATG 1 cut(s) 426
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 52
NsbI TGCGCA 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 4 cut(s) 197, 234, 350, 401
PinAI ACCGGT 1 cut(s) 621
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PpuMI RGGWCCY 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 243, 550
PspGI CCWGG 2 cut(s) 243, 550
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 3 cut(s) 295, 417, 619
PspPPI RGGWCCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 613
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 96
Sau96I GGNCC 3 cut(s) 295, 417, 619
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 245, 552
SduI GDGCHC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 2 cut(s) 295, 619
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 77, 602
SsiI CCGC 4 cut(s) 18, 96, 206, 241
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 243, 550
TaaI ACNGT 2 cut(s) 154, 168
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 156, 170, 177, 195, 523, 598
TasI AATT 2 cut(s) 77, 602
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 4 cut(s) 197, 234, 350, 401
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspGWI ACGGA 2 cut(s) 246, 247
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 295, 619
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.