AT1G71720

S1 RNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013437
Physical Location & Seq
Forward (+)
26983615 .. 26985990
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71720.2

Sequence Viewer

Length: 1503 bp
ATGCAAACGCTTCTCTGTCAGCCATGTAAGTCTCTTCCTATACTCACTGCTTCGTCGTCGTCGTCGTTGATTCGTAGCTCCGGTGATGTGCGAGAATGTATCGATTTTAGAGCGTCGGAGAAAGTCTCGAAGTTTCAATTTCATGTAACCCTAAGCCCCTTTGCCTTTCGTGGTTTCTCAATATGTCGCGAATTTGCTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGAAGATGTTTCCGGTGTTGGAAATGGAGGAATCGTGGCGGAGGAGGAGATTGAGCTATTGAACAAGCCGAATCCTTTACCAAAATCAGAAAATGAGGAGAGTGGTAAAGCAGACGATGACGCGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCGGAAGAAGAAGGGGAAGGAATTGAATCGGAAGTTTCGGATGAGACGGATAGAGTCAGCGTAGAGTATTATGATCCTAAACCAGGTGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAATATTGGTGCAGATATGTTGGGAACTATGTTGACGAAAGAGATACTTCCTTTGTATGATAAAGAGTTGGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAGTTTTTGGTTAATGGGAAAATGGGGATTGTTAAGGATGATGATGAAGGTGTTGAGATTGCGGAGTTTGCTCGGCAAGGTAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCGGAGGTTTTAGGGAGGACGTTGAGTGGAAGACCTTTGCTTTCTTCTAGACGGTATTTTCGGAGAATCGCTTGGCACCGAGTGAGGCAGATCAAACAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACTGGAGGGCTTCTCACCAGAATTGAGGGCTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAAAGTGAACACTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGATTCCTTGTGCAGATAACGCGATTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCTGTACCTTCGAGAAGGAACACTCTTAGAAGGAACAGTTGTCAAAATCTTACCATATGGAGCTCAAGTCAAACTTGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCGAAGAAGAATTGGATCGGTGAGCGATGTGCTTCAGGTGGACGAAAGTGTAAAGGTTCTGGTTGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACCAGGATTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAAGCTGAAGAGATGGCGAAGAAGTACAGAGAAAAAATGCCTTTGGTGGCTACAAGTCCAATTTCTGATCGTCCTCCGATCACAAGCAGTTTCCCACAGGGCAAGGATGAAGAAATCTATGCTAACTGGGAGTGGTTCAAGTTCGAGAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

500

Amino Acids

56.33

Weight (kDa)

5.06

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 359 - 419 8e-10 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 819
AccII CGCG 4 cut(s) 189, 356, 746, 1012
AciI CCGC 3 cut(s) 272, 692, 746
AclWI GGATC 2 cut(s) 455, 1210
AcsI RAATTY 2 cut(s) 191, 377
AcuI CTGAAG 3 cut(s) 648, 1205, 1374
AdeI CACNNNGTG 1 cut(s) 826
AfaI GTAC 2 cut(s) 1073, 1373
AfiI CCNNNNNNNGG 1 cut(s) 470
AjnI CCWGG 3 cut(s) 469, 1058, 1309
AluBI AGCT 8 cut(s) 78, 209, 289, 517, 920, 1069, 1130, 1352
AluI AGCT 8 cut(s) 78, 209, 289, 517, 920, 1069, 1130, 1352
Alw21I GWGCWC 1 cut(s) 1132
Alw26I GTCTC 3 cut(s) 36, 130, 425
AlwI GGATC 2 cut(s) 455, 1210
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 191, 377
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp700I GAANNNNTTC 1 cut(s) 959
AsuHPI GGTGA 6 cut(s) 95, 485, 889, 955, 955, 1219
BanI GGYRCC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 1132
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 2 cut(s) 781, 1029
Bbv12I GWGCWC 1 cut(s) 1132
BccI CCATC 1 cut(s) 1354
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 3 cut(s) 471, 1060, 1311
BcoDI GTCTC 3 cut(s) 36, 130, 425
BfaI CTAG 1 cut(s) 792
BglII AGATCT 1 cut(s) 1275
Bme1390I CCNGG 3 cut(s) 471, 1060, 1311
BmiI GGNNCC 2 cut(s) 366, 821
BmrFI CCNGG 3 cut(s) 471, 1060, 1311
BmrI ACTGGG 1 cut(s) 1483
BmsI GCATC 1 cut(s) 613
BmuI ACTGGG 1 cut(s) 1483
BpiI GAAGAC 2 cut(s) 781, 1029
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 879, 911
BpmI CTGGAG 2 cut(s) 383, 906
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 934, 1116
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 1059
BsaWI WCCGGW 3 cut(s) 80, 245, 388
BsaXI ACNNNNNCTCC 6 cut(s) 252, 282, 1055, 1085, 1119, 1149
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 3 cut(s) 889, 945, 1478
Bse3DI GCAATG 1 cut(s) 1287
BseBI CCWGG 3 cut(s) 471, 1060, 1311
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 1059
BseGI GGATG 3 cut(s) 433, 673, 1459
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 2 cut(s) 1034, 1338
BseNI ACTGG 3 cut(s) 889, 945, 1478
BseRI GAGGAG 3 cut(s) 290, 293, 344
BsgI GTGCAG 2 cut(s) 555, 1022
Bsh1236I CGCG 4 cut(s) 189, 356, 746, 1012
BshFI GGCC 1 cut(s) 715
BshNI GGYRCC 1 cut(s) 819
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 1132
BsiSI CCGG 4 cut(s) 81, 246, 389, 716
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 36, 130, 425
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 1 cut(s) 715
Bsp1286I GDGCHC 1 cut(s) 1132
Bsp143I GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
Bsp68I TCGCGA 1 cut(s) 189
BspACI CCGC 3 cut(s) 272, 692, 746
BspANI GGCC 1 cut(s) 715
BspCNI CTCAG 2 cut(s) 1035, 1337
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 4 cut(s) 189, 356, 746, 1012
BspLI GGNNCC 2 cut(s) 366, 821
BspPI GGATC 2 cut(s) 455, 1210
BspT107I GGYRCC 1 cut(s) 819
BsrDI GCAATG 1 cut(s) 1287
BsrFI RCCGGY 1 cut(s) 715
BsrI ACTGG 3 cut(s) 889, 945, 1478
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 1 cut(s) 1059
BssMI GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 3 cut(s) 471, 1060, 1311
Bst4CI ACNGT 3 cut(s) 736, 798, 1105
Bst6I CTCTTC 3 cut(s) 39, 624, 1350
BstDEI CTNAG 5 cut(s) 152, 1043, 1093, 1283, 1324
BstENI CCTNNNNNAGG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 433, 673, 1459
BstFNI CGCG 4 cut(s) 189, 356, 746, 1012
BstKTI GATC 7 cut(s) 463, 837, 1205, 1278, 1297, 1417, 1428
BstMAI GTCTC 3 cut(s) 36, 130, 425
BstMBI GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
BstMWI GCNNNNNNNGC 3 cut(s) 698, 712, 1009
BstNI CCWGG 3 cut(s) 471, 1060, 1311
BstSCI CCNGG 3 cut(s) 469, 1058, 1309
BstUI CGCG 4 cut(s) 189, 356, 746, 1012
BstV2I GAAGAC 2 cut(s) 781, 1029
BstX2I RGATCY 1 cut(s) 1275
BstYI RGATCY 1 cut(s) 1275
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 1 cut(s) 715
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 1227
BtsCI GGATG 3 cut(s) 433, 673, 1459
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
BtuMI TCGCGA 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 940
Cfr10I RCCGGY 1 cut(s) 715
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 2 cut(s) 102, 362
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 2 cut(s) 1072, 1372
CviAII CATG 2 cut(s) 24, 143
CviQI GTAC 2 cut(s) 1072, 1372
DdeI CTNAG 5 cut(s) 152, 1043, 1093, 1283, 1324
DpnI GATC 7 cut(s) 462, 836, 1204, 1277, 1296, 1416, 1427
DpnII GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
DraI TTTAAA 1 cut(s) 385
DraIII CACNNNGTG 1 cut(s) 826
Eam1104I CTCTTC 3 cut(s) 39, 624, 1350
EarI CTCTTC 3 cut(s) 39, 624, 1350
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 1130
Eco24I GRGCYC 1 cut(s) 1132
Eco53kI GAGCTC 1 cut(s) 1130
Eco57I CTGAAG 3 cut(s) 648, 1205, 1374
EcoICRI GAGCTC 1 cut(s) 1130
EcoNI CCTNNNNNAGG 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 469, 1058, 1309
EcoT38I GRGCYC 1 cut(s) 1132
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 2 cut(s) 27, 146
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 1125, 1157
FaqI GGGAC 1 cut(s) 745
FatI CATG 2 cut(s) 23, 142
FauNDI CATATG 1 cut(s) 1123
FokI GGATG 3 cut(s) 440, 680, 1466
FriOI GRGCYC 1 cut(s) 1132
FspBI CTAG 1 cut(s) 792
GsuI CTGGAG 2 cut(s) 383, 906
HaeIII GGCC 1 cut(s) 715
HapII CCGG 4 cut(s) 81, 246, 389, 716
HgaI GACGC 2 cut(s) 102, 362
Hin1II CATG 2 cut(s) 27, 146
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 9 cut(s) 70, 264, 304, 358, 413, 441, 810, 993, 1495
HpaII CCGG 4 cut(s) 81, 246, 389, 716
HphI GGTGA 6 cut(s) 95, 485, 889, 955, 955, 1219
Hpy166II GTNNAC 5 cut(s) 558, 955, 1163, 1228, 1344
Hpy188I TCNGA 9 cut(s) 118, 322, 418, 427, 807, 930, 1327, 1414, 1425
Hpy188III TCNNGA 9 cut(s) 127, 188, 231, 362, 792, 1079, 1268, 1298, 1492
Hpy8I GTNNAC 5 cut(s) 558, 955, 1163, 1228, 1344
Hpy99I CGWCG 5 cut(s) 58, 61, 64, 67, 118
HpyAV CCTTC 7 cut(s) 392, 398, 671, 967, 1076, 1085, 1091
HpyCH4III ACNGT 3 cut(s) 736, 798, 1105
HpyCH4IV ACGT 2 cut(s) 764, 981
HpyCH4V TGCA 3 cut(s) 4, 536, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 698, 712, 1009
HpyF3I CTNAG 5 cut(s) 152, 1043, 1093, 1283, 1324
HpySE526I ACGT 2 cut(s) 764, 981
Hsp92II CATG 2 cut(s) 27, 146
Kzo9I GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
LmnI GCTCC 4 cut(s) 83, 206, 364, 1127
LweI GCATC 1 cut(s) 613
MabI ACCWGGT 1 cut(s) 469
MaeI CTAG 1 cut(s) 792
MaeII ACGT 2 cut(s) 764, 981
MaeIII GTNAC 1 cut(s) 145
MalI GATC 7 cut(s) 462, 836, 1204, 1277, 1296, 1416, 1427
MboI GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
MflI RGATCY 1 cut(s) 1275
MhlI GDGCHC 1 cut(s) 1132
MluCI AATT 7 cut(s) 137, 191, 377, 408, 903, 1197, 1407
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 3 cut(s) 96, 232, 573
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 5 cut(s) 384, 642, 663, 846, 864
MspI CCGG 4 cut(s) 81, 246, 389, 716
MspR9I CCNGG 3 cut(s) 471, 1060, 1311
MvaI CCWGG 3 cut(s) 471, 1060, 1311
MvnI CGCG 4 cut(s) 189, 356, 746, 1012
MwoI GCNNNNNNNGC 3 cut(s) 698, 712, 1009
NdeI CATATG 1 cut(s) 1123
NdeII GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
NlaIII CATG 2 cut(s) 27, 146
NlaIV GGNNCC 2 cut(s) 366, 821
NmeAIII GCCGAG 1 cut(s) 682
NruI TCGCGA 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 62
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 7 cut(s) 70, 264, 304, 358, 413, 810, 993
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 1132
Psp6I CCWGG 3 cut(s) 469, 1058, 1309
PspGI CCWGG 3 cut(s) 469, 1058, 1309
PspN4I GGNNCC 2 cut(s) 366, 821
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 1 cut(s) 1275
RruI TCGCGA 1 cut(s) 189
RsaI GTAC 2 cut(s) 1073, 1373
RsaNI GTAC 2 cut(s) 1072, 1372
SacI GAGCTC 1 cut(s) 1132
SaqAI TTAA 5 cut(s) 384, 642, 663, 846, 864
Sau3AI GATC 7 cut(s) 460, 834, 1202, 1275, 1294, 1414, 1425
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 471, 1060, 1311
SduI GDGCHC 1 cut(s) 1132
SexAI ACCWGGT 1 cut(s) 469
SfaNI GCATC 1 cut(s) 613
SmlI CTYRAG 2 cut(s) 913, 1131
SmoI CTYRAG 2 cut(s) 913, 1131
Sse9I AATT 7 cut(s) 137, 191, 377, 408, 903, 1197, 1407
SsiI CCGC 3 cut(s) 272, 692, 746
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 792
SstI GAGCTC 1 cut(s) 1132
StyD4I CCNGG 3 cut(s) 469, 1058, 1309
TaaI ACNGT 3 cut(s) 736, 798, 1105
TaiI ACGT 2 cut(s) 767, 984
TaqI TCGA 5 cut(s) 102, 128, 1078, 1189, 1491
TasI AATT 7 cut(s) 137, 191, 377, 408, 903, 1197, 1407
TatI WGTACW 1 cut(s) 1371
TfiI GAWTC 7 cut(s) 70, 264, 304, 358, 413, 810, 993
Tru1I TTAA 5 cut(s) 384, 642, 663, 846, 864
Tru9I TTAA 5 cut(s) 384, 642, 663, 846, 864
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 131, 690, 1309, 1470
TspGWI ACGGA 2 cut(s) 449, 1361
TspRI CASTG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 468
XapI RAATTY 2 cut(s) 191, 377
XbaI TCTAGA 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.