FvH4_2g12900

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013437
Physical Location & Seq
Reverse (-)
11323763 .. 11329735
5973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12900.t1

Sequence Viewer

Length: 1518 bp
ATGCTACTCCTTGTTCACCCTTGTAAGTCTTTCTCTTCTCCCGACTCACCTCCACTGCTTAACAACTTCAACACACTCACGCTGACCTCCCCAGCCTACTCAATTCCAAAGCCTCCAAGTTATACCTCATCTGGGTTTCGTAAAAGACTCGTAATTTCCAAGAAGGCCATCACTTTTTGCTCTAGGAATGATGTTTTTGATGTTTTTCCGAGCACCCATTTGGCCCATAAGGCCAACGGAGTTGAGATGGAAGATAATGAAGAGCTTGAGTTGCTGAACAAGCCTTCCCCAGTTCCTATGGAGAATGGGTCTGCTTCTGAAGTAGATAAAGAATCTGTAAAAAACGAGGCTTTAGCGCCCTTTTTGAAGTTTTTCACTCCAAGAGATTCTATGGAGGAAGTAGAAGACAAGGGAGGGGTTGAAGTAGAAGTGTTTGAGGAGACAAGTGAAGTGGACGATGAGCATGAGGAGGTTGAAAAGGTTAAGGTTGAGTACTATGAACCGAAACCTGGTGATTTTGTGGTTGGTGTTGTTGTTTCGGGTAATGAGAATAAGCTTGATGTGAATGTGGGGGCAGACTTACTGGGTACAATGTTGACTAAGGAGGTGTTACCTTTGTATGACAAAGAGATGGAATACTTGCTTTGTGAAACGGATTATGGTGCCGAGGAATTTATGGTTCGAGGGAAGATGGGAATTGTCAAGAGTGAAGCTGTTCGTGGAGCACCAATGCCAGGGAAGCCTGTTGTGGAAACTGGAACTATTTTGTTTGCTGAGGTTCTTGGGAGAACGCTCAGCGGTCGGCCTTTGCTTTCAACTAGGCGGCTCTTCCGCAGGATTGCTTGGCACCGAGTGAGGCAGATAAAACAACTCAATGAACCTATCAGAGTAAGAATTACAGAATGGAATACTGGAGGACTTCTTACGAGAATTGAGGGTTTGCGAGCTTTCCTTCCAAAAGCTGAGTTAATGAGCAGAGTCAACAACTTTACAGAGCTGAAAGAAAATGTGGGAAGCCAGATGTATGTGCAGATCACTCGAATAGACGAAGCCAAGAATGACTTGGTATTGAGCGAAAGGGAAGCTTGGGAAATGTTAAACCTTAGAGAGGGAACACTTTTGGAAGGGACTGTCAAGAAAATTTTTCCATATGGAGCCCAAGTCAGGATAGGTGAAACTAACAGAAGTGGCTTGCTGCATATCTCAAACATCACTCGTTCCCGAATCACTTCCGTTGGCGACCTACTTTCTGTTGATGAGAAGATCAAAGTTCTGGTTGTGAAGTCGATGTTTCCTGATAAAATATCTCTTAGCATTGCAGACCTTGAAAGCGAGCCTGGCCTGTTTGTATCGAACAAAGAGAAATTATTTTCAGAGGCTGAATTGATGGCAAAAAAGTATAGGCAAAAGCTGCCTGCTGTTCTATCTCGTAGGTCAGAATCCCCTCGAACCAATTCTCTACCGTTTGATAGTCTAAACATGTATGCAAATTGGAAGTGGTTCAAATTTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

506

Amino Acids

57.05

Weight (kDa)

5.72

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 369 - 428 8.9e-09 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 662, 846
AciI CCGC 3 cut(s) 798, 823, 832
AcsI RAATTY 3 cut(s) 671, 1140, 1505
AcuI CTGAAG 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 2 cut(s) 494, 589
AfiI CCNNNNNNNGG 5 cut(s) 132, 509, 734, 1108, 1164
AflIII ACRYGT 1 cut(s) 1479
AgsI TTSAA 8 cut(s) 70, 367, 422, 476, 816, 1328, 1504, 1511
AjnI CCWGG 3 cut(s) 508, 733, 1336
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 8 cut(s) 265, 556, 713, 947, 962, 997, 1085, 1411
AluI AGCT 8 cut(s) 265, 556, 713, 947, 962, 997, 1085, 1411
Alw21I GWGCWC 2 cut(s) 215, 727
Alw26I GTCTC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 1379
AoxI GGCC 5 cut(s) 165, 222, 231, 803, 1339
ApeKI GCWGC 2 cut(s) 1195, 1411
ApoI RAATTY 3 cut(s) 671, 1140, 1505
Asp700I GAANNNNTTC 5 cut(s) 371, 714, 1228, 1453, 1499
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 8, 39, 524, 1184
BanI GGYRCC 2 cut(s) 662, 846
BanII GRGCYC 1 cut(s) 1159
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 215, 727
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 1182, 1398
BccI CCATC 5 cut(s) 176, 241, 625, 685, 1381
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 3 cut(s) 510, 735, 1338
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 2 cut(s) 183, 819
BfoI RGCGCY 1 cut(s) 359
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 3 cut(s) 824, 1196, 1412
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 3 cut(s) 825, 1197, 1413
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 3 cut(s) 510, 735, 1338
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 3 cut(s) 664, 848, 1156
BmrFI CCNGG 3 cut(s) 510, 735, 1338
BmrI ACTGGG 2 cut(s) 284, 593
BmuI ACTGGG 2 cut(s) 284, 593
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 774
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 666, 734
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 1146, 1176
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 509, 734, 1108, 1164
Bse1I ACTGG 4 cut(s) 290, 588, 760, 916
Bse3DI GCAATG 1 cut(s) 1314
BseBI CCWGG 3 cut(s) 510, 735, 1338
BseDI CCNNGG 2 cut(s) 666, 734
BseLI CCNNNNNNNGG 5 cut(s) 132, 509, 734, 1108, 1164
BseMI GCAATG 1 cut(s) 1314
BseMII CTCAG 3 cut(s) 765, 808, 954
BseNI ACTGG 4 cut(s) 290, 588, 760, 916
BseRI GAGGAG 2 cut(s) 452, 482
BseXI GCAGC 2 cut(s) 1182, 1398
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 1049
Bsh1285I CGRYCG 1 cut(s) 802
BshFI GGCC 5 cut(s) 167, 224, 233, 805, 1341
BshNI GGYRCC 2 cut(s) 662, 846
BsiEI CGRYCG 1 cut(s) 802
BsiHKAI GWGCWC 2 cut(s) 215, 727
BslFI GGGAC 1 cut(s) 1141
BslI CCNNNNNNNGG 5 cut(s) 132, 509, 734, 1108, 1164
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 1141
BsnI GGCC 5 cut(s) 167, 224, 233, 805, 1341
Bsp1286I GDGCHC 3 cut(s) 215, 727, 1159
Bsp143I GATC 2 cut(s) 1032, 1263
Bsp1720I GCTNAGC 1 cut(s) 794
BspACI CCGC 3 cut(s) 798, 823, 832
BspANI GGCC 5 cut(s) 167, 224, 233, 805, 1341
BspCNI CTCAG 3 cut(s) 766, 807, 955
BspLI GGNNCC 3 cut(s) 664, 848, 1156
BspQI GCTCTTC 2 cut(s) 255, 833
BspT107I GGYRCC 2 cut(s) 662, 846
BsrDI GCAATG 1 cut(s) 1314
BsrI ACTGG 4 cut(s) 290, 588, 760, 916
BssECI CCNNGG 2 cut(s) 666, 734
BssMI GATC 2 cut(s) 1032, 1263
Bst2UI CCWGG 3 cut(s) 510, 735, 1338
Bst4CI ACNGT 2 cut(s) 1132, 1464
Bst6I CTCTTC 3 cut(s) 40, 255, 833
BstAPI GCANNNNNTGC 1 cut(s) 1411
BstC8I GCNNGC 4 cut(s) 945, 1193, 1334, 1416
BstDEI CTNAG 6 cut(s) 600, 774, 794, 963, 1103, 1310
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 1035, 1266
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 1032, 1263
BstMCI CGRYCG 1 cut(s) 802
BstMWI GCNNNNNNNGC 6 cut(s) 230, 271, 280, 739, 1338, 1411
BstNI CCWGG 3 cut(s) 510, 735, 1338
BstNSI RCATGY 1 cut(s) 1483
BstSCI CCNGG 3 cut(s) 508, 733, 1336
BstV1I GCAGC 2 cut(s) 1182, 1398
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 5 cut(s) 167, 224, 233, 805, 1341
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 4 cut(s) 945, 1193, 1334, 1416
CaiI CAGNNNCTG 1 cut(s) 1379
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 2 cut(s) 493, 588
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 2 cut(s) 464, 1480
CviQI GTAC 2 cut(s) 493, 588
DdeI CTNAG 6 cut(s) 600, 774, 794, 963, 1103, 1310
DpnI GATC 2 cut(s) 1034, 1265
DpnII GATC 2 cut(s) 1032, 1263
DraIII CACNNNGTG 1 cut(s) 853
Eam1104I CTCTTC 3 cut(s) 40, 255, 833
EarI CTCTTC 3 cut(s) 40, 255, 833
Eco24I GRGCYC 1 cut(s) 1159
Eco57I CTGAAG 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoRII CCWGG 3 cut(s) 508, 733, 1336
EcoT38I GRGCYC 1 cut(s) 1159
FaeI CATG 2 cut(s) 467, 1483
FalI AAGNNNNNCTT 4 cut(s) 1046, 1078, 1069, 1101
FaqI GGGAC 1 cut(s) 1141
FatI CATG 2 cut(s) 463, 1479
FauNDI CATATG 1 cut(s) 1150
Fnu4HI GCNGC 3 cut(s) 824, 1196, 1412
FriOI GRGCYC 1 cut(s) 1159
Fsp4HI GCNGC 3 cut(s) 824, 1196, 1412
FspBI CTAG 2 cut(s) 183, 819
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 824, 1196, 1412
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 5 cut(s) 167, 224, 233, 805, 1341
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 467, 1483
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 2 cut(s) 597, 982
HindII GTYRAC 2 cut(s) 597, 982
HindIII AAGCTT 2 cut(s) 554, 1083
HinfI GANTC 7 cut(s) 44, 147, 332, 386, 978, 1224, 1439
HphI GGTGA 4 cut(s) 8, 39, 524, 1184
Hpy166II GTNNAC 4 cut(s) 16, 454, 597, 982
Hpy188I TCNGA 5 cut(s) 210, 319, 887, 1375, 1438
Hpy188III TCNNGA 6 cut(s) 41, 703, 1135, 1165, 1221, 1295
Hpy8I GTNNAC 4 cut(s) 16, 454, 597, 982
HpyAV CCTTC 4 cut(s) 157, 294, 962, 1118
HpyCH4III ACNGT 2 cut(s) 1132, 1464
HpyCH4V TGCA 4 cut(s) 1030, 1198, 1319, 1487
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 271, 280, 739, 1338, 1411
HpyF3I CTNAG 6 cut(s) 600, 774, 794, 963, 1103, 1310
Hsp92II CATG 2 cut(s) 467, 1483
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 2 cut(s) 1032, 1263
LguI GCTCTTC 2 cut(s) 255, 833
LmnI GCTCC 2 cut(s) 722, 1154
Lsp1109I GCAGC 2 cut(s) 1182, 1398
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 2 cut(s) 183, 819
MaeIII GTNAC 1 cut(s) 609
MalI GATC 2 cut(s) 1034, 1265
MboI GATC 2 cut(s) 1032, 1263
MboII GAAGA 7 cut(s) 27, 263, 272, 416, 700, 820, 1273
MhlI GDGCHC 3 cut(s) 215, 727, 1159
MlyI GAGTC 3 cut(s) 38, 141, 987
MroXI GAANNNNTTC 5 cut(s) 371, 714, 1228, 1453, 1499
MseI TTAA 4 cut(s) 60, 483, 968, 1097
MspA1I CMGCKG 1 cut(s) 798
MspR9I CCNGG 3 cut(s) 510, 735, 1338
MvaI CCWGG 3 cut(s) 510, 735, 1338
MwoI GCNNNNNNNGC 6 cut(s) 230, 271, 280, 739, 1338, 1411
NdeI CATATG 1 cut(s) 1150
NdeII GATC 2 cut(s) 1032, 1263
NlaIII CATG 2 cut(s) 467, 1483
NlaIV GGNNCC 3 cut(s) 664, 848, 1156
NmeAIII GCCGAG 1 cut(s) 691
NspI RCATGY 1 cut(s) 1483
PciI ACATGT 1 cut(s) 1479
PciSI GCTCTTC 2 cut(s) 255, 833
PdmI GAANNNNTTC 5 cut(s) 371, 714, 1228, 1453, 1499
PfeI GAWTC 4 cut(s) 332, 386, 1224, 1439
PkrI GCNGC 3 cut(s) 825, 1197, 1413
PleI GAGTC 3 cut(s) 38, 141, 986
PpsI GAGTC 3 cut(s) 38, 141, 986
PscI ACATGT 1 cut(s) 1479
Psp6I CCWGG 3 cut(s) 508, 733, 1336
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 3 cut(s) 508, 733, 1336
PspN4I GGNNCC 3 cut(s) 664, 848, 1156
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 1379
RsaI GTAC 2 cut(s) 494, 589
RsaNI GTAC 2 cut(s) 493, 588
SapI GCTCTTC 2 cut(s) 255, 833
SaqAI TTAA 4 cut(s) 60, 483, 968, 1097
SatI GCNGC 3 cut(s) 824, 1196, 1412
Sau3AI GATC 2 cut(s) 1032, 1263
Sau96I GGNCC 1 cut(s) 223
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 3 cut(s) 38, 141, 987
ScrFI CCNGG 3 cut(s) 510, 735, 1338
SduI GDGCHC 3 cut(s) 215, 727, 1159
SexAI ACCWGGT 1 cut(s) 508
SfiI GGCCNNNNNGGCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SsiI CCGC 3 cut(s) 798, 823, 832
SspMI CTAG 2 cut(s) 183, 819
StyD4I CCNGG 3 cut(s) 508, 733, 1336
TaaI ACNGT 2 cut(s) 1132, 1464
TaqI TCGA 5 cut(s) 682, 1039, 1286, 1352, 1447
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 826
TfiI GAWTC 4 cut(s) 332, 386, 1224, 1439
Tru1I TTAA 4 cut(s) 60, 483, 968, 1097
Tru9I TTAA 4 cut(s) 60, 483, 968, 1097
TscAI CASTG 1 cut(s) 60
TseI GCWGC 2 cut(s) 1195, 1411
TspDTI ATGAA 3 cut(s) 273, 513, 891
TspGWI ACGGA 3 cut(s) 252, 668, 1222
TspRI CASTG 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 3 cut(s) 671, 1140, 1505
XceI RCATGY 1 cut(s) 1483
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmnI GAANNNNTTC 5 cut(s) 371, 714, 1228, 1453, 1499
XspI CTAG 2 cut(s) 183, 819
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.