RLG00000013585

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013437
Physical Location & Seq
Forward (+)
33639447 .. 33645836
6390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013585

Sequence Viewer

Length: 1584 bp
ATGAAGAGAGAGTCCGCCGAGGAAAGAAGTAGTTTCGACGAACCTCAAGGTAGAGAGGGTTCAGTTTCTTGCACCTTAATGTCTTTCTCTTTTCCCGACTCCCCACCACCGCTTAACACCTTCAACACACTAAGACCAACCGTCCCAAATTACTCAATTCCCAAACCTCCAACTCATACCTCATTTGGGTTTCCTACAAGACTCGTAATTTCCAAGATTTTTCCACTTCGGAGAAGTTCGGCCATCACGTTTTGCTCTAGGAATGATGTTTTCGATGTTTTTCCGAGTACCCATGAGGCGAACGGAGTGGAAATGGAAGAAAACGAAGAGCTTGAGTTGCTAAACAAGCCTTCCCCAGTTCCTATGGATAATGGGTCTGCTTCAGAAATAGATAAAGAATCGGTAAAAAACGAGGCTTTAGCGCCTTTTTTGAAGTTTTTCACGCCAAGGGATTCTGTGGAGGAAGTAGAAGAAAAGGGAGGTGATGAAGTAGAAGTGTTTGAGGAGAAAAGTGAAGTGGATGATGAAAATGAGGAGGTTGAGAAGGTTAGTGTTGAGTACTATGAACCGAAACCGGGTGATTTTGTGGTTGGTGTTGTTGTGTCGGGTAATGAGAATAAGCTTGATGTGAATGTTGGGGCAGACTTACTAGGTACAATGTTGACTAAGGAGGTGTTACCTTTGTATGACAAAGAGATGGAATATTTGCTTTGTGATACAAGTTATGGTGTCGAGGAATTTATGGTTCGAGGGAAGATGGGAATTGTCAAGAGTGAAGCTGTGAGCGGGGCACCAATGCCGGGGAAGCCTGTTGTGGAAACTGGAACTATTTTGTTTGCTGAGGTTCTTGGGAGAACGCTCAGCGGTCGGCCCTTGCTTTCGACAAGGCGGCTCTTCCGCAGGATTGCTTGGCACCGAGTGAGGCAGATAAAGCAACTCAATGAACCTATCAGCGTTAGAATTACAGAATGGAATACTGGAGGCCTTCTTACGAGAATTGAGGGTTTGCGAGCTTTCCTTCCAAAAGCTGAGTTAATGAGCAGAGTGAACAACTTTACGGAGCTGAAGCAGAACGTGGGATGCCAGATGTATGTGCAGATCACTCGAATAGATGAAGCCAAGAATGACTTAGTATTGAGTGAAAGGGAAGCTTGGGAAATGTTAAACCTTAGAGAGGGAACACTCTTAGAAGGGACTGTTAAGAAAATTTTTCCTTATGGAGCCCAAGTCAGGATAGGTGAAACTAACAGAAGTGGCCTGCTGCATATCTCAAACATCACTCGTGCTCGAATTACTTCTGTTGGCGACCTACTTTCTGTCAATGAGAAGATCAAAGTTCTAGTAGTGAAGTCGATGTTTCCTGATAAAATATGTCTCAGCATTGCAGACCTTGAGAGCGAGCCTGGCCTCTTTGTATCAAACAAAGAGAAATTTTTTTCAGAGGCTGAATTGATGGCAAAAAAGTATAGGCAAAAGCTACCTGCTGTTCTATCTCGTAGGTCAGAATCCCCTCAAGGCAATTCTCTACCTTTTGATAGACTAAACATGTATGCAAATTGGAAGTGGTTCAAATTTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

528

Amino Acids

59.51

Weight (kDa)

5.29

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 317 - 380 3.7e-06 S1 RNA binding domain
S1 PF00575 391 - 450 3.6e-08 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1489
AccB1I GGYRCC 2 cut(s) 790, 912
AccBSI CCGCTC 1 cut(s) 786
AciI CCGC 6 cut(s) 15, 110, 786, 864, 889, 898
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 4 cut(s) 737, 1206, 1430, 1571
AcuI CTGAAG 2 cut(s) 366, 1085
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 3 cut(s) 289, 560, 655
AfiI CCNNNNNNNGG 5 cut(s) 186, 575, 800, 1174, 1230
AflIII ACRYGT 1 cut(s) 1545
AgsI TTSAA 4 cut(s) 124, 433, 1570, 1577
AhdI GACNNNNNGTC 1 cut(s) 140
AjnI CCWGG 1 cut(s) 1402
AluBI AGCT 8 cut(s) 331, 622, 779, 1013, 1028, 1063, 1151, 1477
AluI AGCT 8 cut(s) 331, 622, 779, 1013, 1028, 1063, 1151, 1477
Alw21I GWGCWC 1 cut(s) 1288
Alw26I GTCTC 1 cut(s) 1379
AlwNI CAGNNNCTG 1 cut(s) 1445
AoxI GGCC 5 cut(s) 240, 869, 982, 1255, 1405
ApeKI GCWGC 1 cut(s) 1261
ApoI RAATTY 4 cut(s) 737, 1206, 1430, 1571
Asp700I GAANNNNTTC 3 cut(s) 437, 1294, 1565
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 870
AsuC2I CCSGG 2 cut(s) 576, 801
AsuHPI GGTGA 3 cut(s) 494, 590, 1250
BaeGI GKGCMC 1 cut(s) 793
BanI GGYRCC 2 cut(s) 790, 912
BanII GRGCYC 1 cut(s) 1225
BauI CACGAG 1 cut(s) 1281
Bbv12I GWGCWC 1 cut(s) 1288
BbvCI CCTCAGC 1 cut(s) 840
BbvI GCAGC 1 cut(s) 1248
BccI CCATC 4 cut(s) 251, 691, 751, 1447
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BciT130I CCWGG 1 cut(s) 1404
BcnI CCSGG 2 cut(s) 576, 801
BcoDI GTCTC 1 cut(s) 1379
BfaI CTAG 3 cut(s) 258, 650, 1340
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 1489
BisI GCNGC 2 cut(s) 890, 1262
BlpI GCTNAGC 1 cut(s) 860
BlsI GCNGC 2 cut(s) 891, 1263
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 3 cut(s) 576, 801, 1404
BmeRI GACNNNNNGTC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 870
BmiI GGNNCC 3 cut(s) 792, 914, 1222
BmrFI CCNGG 3 cut(s) 576, 801, 1404
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 1070
BmuI ACTGGG 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 840
Bpu1102I GCTNAGC 1 cut(s) 860
BpuEI CTTGAG 4 cut(s) 30, 353, 1412, 1497
BpuMI CCSGG 2 cut(s) 576, 801
BsaJI CCNNGG 3 cut(s) 18, 446, 800
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 575, 800, 1174, 1230
Bse1I ACTGG 3 cut(s) 356, 826, 982
Bse3DI GCAATG 1 cut(s) 1380
BseBI CCWGG 1 cut(s) 1404
BseDI CCNNGG 3 cut(s) 18, 446, 800
BseGI GGATG 2 cut(s) 526, 1085
BseLI CCNNNNNNNGG 5 cut(s) 186, 575, 800, 1174, 1230
BseMI GCAATG 1 cut(s) 1380
BseMII CTCAG 4 cut(s) 831, 874, 1020, 1390
BseNI ACTGG 3 cut(s) 356, 826, 982
BseRI GAGGAG 2 cut(s) 518, 548
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 1 cut(s) 1248
BsgI GTGCAG 1 cut(s) 1115
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 5 cut(s) 242, 871, 984, 1257, 1407
BshNI GGYRCC 2 cut(s) 790, 912
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 1288
BsiSI CCGG 2 cut(s) 575, 800
BslFI GGGAC 2 cut(s) 128, 1207
BslI CCNNNNNNNGG 5 cut(s) 186, 575, 800, 1174, 1230
BsmAI GTCTC 1 cut(s) 1379
BsmFI GGGAC 2 cut(s) 128, 1207
BsnI GGCC 5 cut(s) 242, 871, 984, 1257, 1407
Bsp1286I GDGCHC 3 cut(s) 793, 1225, 1288
Bsp143I GATC 2 cut(s) 1098, 1329
Bsp1720I GCTNAGC 1 cut(s) 860
BspACI CCGC 6 cut(s) 15, 110, 786, 864, 889, 898
BspANI GGCC 5 cut(s) 242, 871, 984, 1257, 1407
BspCNI CTCAG 4 cut(s) 832, 873, 1021, 1389
BspLI GGNNCC 3 cut(s) 792, 914, 1222
BspMI ACCTGC 1 cut(s) 1489
BspQI GCTCTTC 2 cut(s) 321, 899
BspT107I GGYRCC 2 cut(s) 790, 912
BsrBI CCGCTC 1 cut(s) 786
BsrDI GCAATG 1 cut(s) 1380
BsrI ACTGG 3 cut(s) 356, 826, 982
BssECI CCNNGG 3 cut(s) 18, 446, 800
BssMI GATC 2 cut(s) 1098, 1329
BssSI CACGAG 1 cut(s) 1281
BssT1I CCWWGG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 1281
Bst2UI CCWGG 1 cut(s) 1404
Bst4CI ACNGT 2 cut(s) 142, 1198
Bst6I CTCTTC 2 cut(s) 321, 899
BstC8I GCNNGC 3 cut(s) 1011, 1259, 1400
BstDEI CTNAG 9 cut(s) 131, 666, 840, 860, 1029, 1129, 1169, 1186, 1376
BstENI CCTNNNNNAGG 1 cut(s) 1172
BstF5I GGATG 2 cut(s) 526, 1085
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 1101, 1332
BstMAI GTCTC 1 cut(s) 1379
BstMBI GATC 2 cut(s) 1098, 1329
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 5 cut(s) 337, 346, 805, 931, 1404
BstNI CCWGG 1 cut(s) 1404
BstNSI RCATGY 1 cut(s) 1549
BstSCI CCNGG 3 cut(s) 574, 799, 1402
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 1248
BsuRI GGCC 5 cut(s) 242, 871, 984, 1257, 1407
BtsCI GGATG 2 cut(s) 526, 1085
BveI ACCTGC 1 cut(s) 1489
Cac8I GCNNGC 3 cut(s) 1011, 1259, 1400
CaiI CAGNNNCTG 1 cut(s) 1445
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 870
Csp6I GTAC 3 cut(s) 288, 559, 654
CviAII CATG 2 cut(s) 293, 1546
CviQI GTAC 3 cut(s) 288, 559, 654
DdeI CTNAG 9 cut(s) 131, 666, 840, 860, 1029, 1129, 1169, 1186, 1376
DpnI GATC 2 cut(s) 1100, 1331
DpnII GATC 2 cut(s) 1098, 1329
DraIII CACNNNGTG 1 cut(s) 919
DriI GACNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 321, 899
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 2 cut(s) 321, 899
EciI GGCGGA 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 1225
Eco57I CTGAAG 2 cut(s) 366, 1085
EcoNI CCTNNNNNAGG 1 cut(s) 1172
EcoRII CCWGG 1 cut(s) 1402
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 1225
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 2 cut(s) 296, 1549
FalI AAGNNNNNCTT 4 cut(s) 1112, 1144, 1135, 1167
FaqI GGGAC 2 cut(s) 128, 1207
FatI CATG 2 cut(s) 292, 1545
FauI CCCGC 1 cut(s) 779
Fnu4HI GCNGC 2 cut(s) 890, 1262
FokI GGATG 2 cut(s) 533, 1092
FriOI GRGCYC 1 cut(s) 1225
Fsp4HI GCNGC 2 cut(s) 890, 1262
FspBI CTAG 3 cut(s) 258, 650, 1340
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 890, 1262
GsuI CTGGAG 1 cut(s) 999
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 5 cut(s) 242, 871, 984, 1257, 1407
HapII CCGG 2 cut(s) 575, 800
HhaI GCGC 1 cut(s) 424
Hin1II CATG 2 cut(s) 296, 1549
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 2 cut(s) 620, 1149
HinfI GANTC 6 cut(s) 11, 98, 201, 398, 452, 1505
HpaII CCGG 2 cut(s) 575, 800
HphI GGTGA 3 cut(s) 494, 590, 1250
Hpy166II GTNNAC 2 cut(s) 663, 1048
Hpy188I TCNGA 5 cut(s) 231, 285, 385, 1441, 1504
Hpy188III TCNNGA 4 cut(s) 95, 769, 1231, 1361
Hpy8I GTNNAC 2 cut(s) 663, 1048
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 6 cut(s) 130, 360, 538, 995, 1028, 1184
HpyCH4III ACNGT 2 cut(s) 142, 1198
HpyCH4IV ACGT 2 cut(s) 248, 1074
HpyCH4V TGCA 5 cut(s) 72, 1096, 1264, 1385, 1553
HpyF10VI GCNNNNNNNGC 5 cut(s) 337, 346, 805, 931, 1404
HpyF3I CTNAG 9 cut(s) 131, 666, 840, 860, 1029, 1129, 1169, 1186, 1376
HpySE526I ACGT 2 cut(s) 248, 1074
Hsp92II CATG 2 cut(s) 296, 1549
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 2 cut(s) 1098, 1329
LguI GCTCTTC 2 cut(s) 321, 899
LmnI GCTCC 2 cut(s) 1060, 1220
Lsp1109I GCAGC 1 cut(s) 1248
LweI GCATC 1 cut(s) 1070
MaeI CTAG 3 cut(s) 258, 650, 1340
MaeII ACGT 2 cut(s) 248, 1074
MaeIII GTNAC 1 cut(s) 675
MalI GATC 2 cut(s) 1100, 1331
MbiI CCGCTC 1 cut(s) 786
MboI GATC 2 cut(s) 1098, 1329
MboII GAAGA 7 cut(s) 16, 329, 338, 482, 766, 886, 1339
MhlI GDGCHC 3 cut(s) 793, 1225, 1288
MlyI GAGTC 3 cut(s) 20, 92, 195
MmeI TCCRAC 1 cut(s) 194
MroXI GAANNNNTTC 3 cut(s) 437, 1294, 1565
MseI TTAA 5 cut(s) 77, 114, 1034, 1163, 1200
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 2 cut(s) 575, 800
MspR9I CCNGG 3 cut(s) 576, 801, 1404
MvaI CCWGG 1 cut(s) 1404
MwoI GCNNNNNNNGC 5 cut(s) 337, 346, 805, 931, 1404
NciI CCSGG 2 cut(s) 576, 801
NdeII GATC 2 cut(s) 1098, 1329
NlaIII CATG 2 cut(s) 296, 1549
NlaIV GGNNCC 3 cut(s) 792, 914, 1222
NmeAIII GCCGAG 1 cut(s) 43
NspI RCATGY 1 cut(s) 1549
PceI AGGCCT 1 cut(s) 984
PciI ACATGT 1 cut(s) 1545
PciSI GCTCTTC 2 cut(s) 321, 899
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PdmI GAANNNNTTC 3 cut(s) 437, 1294, 1565
PfeI GAWTC 3 cut(s) 398, 452, 1505
PkrI GCNGC 2 cut(s) 891, 1263
PleI GAGTC 3 cut(s) 19, 92, 195
PpsI GAGTC 3 cut(s) 19, 92, 195
PscI ACATGT 1 cut(s) 1545
Psp6I CCWGG 1 cut(s) 1402
PspGI CCWGG 1 cut(s) 1402
PspN4I GGNNCC 3 cut(s) 792, 914, 1222
PspPI GGNCC 1 cut(s) 870
PsrI GAACNNNNNNTAC 2 cut(s) 43, 75
PstNI CAGNNNCTG 1 cut(s) 1445
RsaI GTAC 3 cut(s) 289, 560, 655
RsaNI GTAC 3 cut(s) 288, 559, 654
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 2 cut(s) 321, 899
SaqAI TTAA 5 cut(s) 77, 114, 1034, 1163, 1200
SatI GCNGC 2 cut(s) 890, 1262
Sau3AI GATC 2 cut(s) 1098, 1329
Sau96I GGNCC 1 cut(s) 870
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 3 cut(s) 20, 92, 195
ScrFI CCNGG 3 cut(s) 576, 801, 1404
SduI GDGCHC 3 cut(s) 793, 1225, 1288
SfaNI GCATC 1 cut(s) 1070
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 4 cut(s) 45, 332, 1391, 1512
SmoI CTYRAG 4 cut(s) 45, 332, 1391, 1512
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 6 cut(s) 15, 110, 786, 864, 889, 898
SspI AATATT 1 cut(s) 704
SspMI CTAG 3 cut(s) 258, 650, 1340
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 3 cut(s) 574, 799, 1402
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 142, 1198
TaiI ACGT 2 cut(s) 251, 1077
TaqI TCGA 8 cut(s) 36, 273, 732, 748, 881, 1105, 1288, 1352
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 892
TfiI GAWTC 3 cut(s) 398, 452, 1505
Tru1I TTAA 5 cut(s) 77, 114, 1034, 1163, 1200
Tru9I TTAA 5 cut(s) 77, 114, 1034, 1163, 1200
TseI GCWGC 1 cut(s) 1261
TspDTI ATGAA 6 cut(s) 17, 501, 540, 579, 957, 1128
TspGWI ACGGA 2 cut(s) 318, 1073
XagI CCTNNNNNAGG 1 cut(s) 1172
XapI RAATTY 4 cut(s) 737, 1206, 1430, 1571
XceI RCATGY 1 cut(s) 1549
XmnI GAANNNNTTC 3 cut(s) 437, 1294, 1565
XspI CTAG 3 cut(s) 258, 650, 1340
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.