Rh6BG197400

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013437
Physical Location & Seq
Reverse (-)
37167988 .. 37174395
6408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG197400.1

Sequence Viewer

Length: 1446 bp
ATGCTACTCCTTGTCCACCCCTGTAAGTCTCTCTCTTTTCCCGACTCCCCACCACCGCTTAACAACTTCCACACACTAAGACCAACCATCTCAAATTACTCAATTCCAAAACCTCCAATTCATACCTCATTTGGGTTTCCCACAAGACTCGTAATTTCCAAGATTTTTCCACTTCGGAGAAGTTCGGCCATCACGTTTTGCTCTAGGAATGATGTTTTCGATGTTTTTCCGAGTACCCATAAGGCGAACGGAGTGGAAATGGAAGAAAACGAGGAGCTTGAGTTGCTAAACAAGCCTTCCCCAGTTCCTATGGATAATGGGTCTGCTTCAGAAGTAGATAAAGAATCTGAAAAAAACGAGGCTTTAGCGCCTTTTTTGAAGTTTTTCACGCCAAGAGATTCTGTGGAGGAAGTAGAAGAAAAGGGAGGTGATGAAGTACAAGTGTTTGAGGAGAAAAGTGAAGTGGATGATGAAAACGAGGAGGTTGAGAAGGTTAATGTCGAGTACTATGAACCGAAACCGGGTGATTTTGTGGTTGGTGTTGTTGTGTCGGGTAATGAGAATAAGCTTGATGTGAATGTTGGGGCAGACTTACTAGGTACAATGTTGACTAAGGAGGTGTTACCTTTGTATGACAAGGAGATGGAATACTTGCTTTGTGATACAAGTTATGGTGCCGAGGAATTTATGGTTCGAGGGAAGATGGGAATTGTCAAGAGTGAAGCTGTGAGAGGGGCACCAATGCCGGGGAAGCCTGTTGTGGAAACTGGAACTATTTTGTTTGCTGAGGTTCTTGGGAGAACGCTCAGCGGTCGGCCCTTGCTTTCGACAAGGCGGCTCTTCCGCAGGATTGCTTGGCACCGAGTGAGGCAGATAAAGCAACTCAATGAACCTATCAGCGTTAGAATTACAGAATGGAATACCGGAGGCCTTCTTACGAGAGTTGAGGGTTTGCGAGCTTTCCTTCCAAAAGCTGAGTTAATGAGCAGAGTGAACAACTTTACAGAGCTGAAAGAGAACGTGGGATGCCAGATGTATGTGCAGATCACTCGAATAGACGAAGCCAAGAATGACCTAGTATTGAGTGAAAGGGAAGCTTGGGAAATGTTAAACCTTAGAGAGGGAACACTATTAGAAGGGACTGTTAAGAAAATTTTTCCTTATGGAGCCCAAGTCAGGATAGGTGAAACTAACAGAAGTGGCCTGCTGCATATCTCAAACTTCACTCGTGCTCGAATTACTTCTGTTGGCGACCTACTTTCTGTTAATGAGAAGATCAAAGTTCTAGTGGTGAAGTCGATGTTTCCTGATAAAATATCTCTCAGGTATGTAAGAATTGGGATTATTATTTTATTATTATTATCACTATTTTTTTTTTCAGACCTACTGAAGTCATCATTGTTCTCTCTATTCTTGAGTGATTATATGAATCCCAGACCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

481

Amino Acids

54.34

Weight (kDa)

5.68

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 373 - 432 1.4e-07 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 674, 736, 858
AciI CCGC 4 cut(s) 56, 810, 835, 844
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 683, 1152
AcuI CTGAAG 2 cut(s) 312, 1409
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 4 cut(s) 235, 438, 506, 601
AfiI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 7 cut(s) 277, 568, 725, 959, 974, 1009, 1097
AluI AGCT 7 cut(s) 277, 568, 725, 959, 974, 1009, 1097
Alw21I GWGCWC 1 cut(s) 1234
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 4 cut(s) 186, 815, 928, 1201
ApeKI GCWGC 1 cut(s) 1207
ApoI RAATTY 2 cut(s) 683, 1152
Asp700I GAANNNNTTC 2 cut(s) 383, 1240
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 816
AsuC2I CCSGG 2 cut(s) 522, 747
AsuHPI GGTGA 4 cut(s) 440, 536, 1196, 1303
BaeGI GKGCMC 1 cut(s) 739
BanI GGYRCC 3 cut(s) 674, 736, 858
BanII GRGCYC 1 cut(s) 1171
BauI CACGAG 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 1234
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 1 cut(s) 1194
BccI CCATC 4 cut(s) 95, 197, 637, 697
BcgI CGANNNNNNTGC 2 cut(s) 1031, 1065
BcnI CCSGG 2 cut(s) 522, 747
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 4 cut(s) 204, 596, 1076, 1286
BfoI RGCGCY 1 cut(s) 371
BisI GCNGC 2 cut(s) 836, 1208
BlpI GCTNAGC 1 cut(s) 806
BlsI GCNGC 2 cut(s) 837, 1209
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 2 cut(s) 522, 747
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 4 cut(s) 676, 738, 860, 1168
BmrFI CCNGG 2 cut(s) 522, 747
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 806
BpuEI CTTGAG 2 cut(s) 299, 1435
BpuMI CCSGG 2 cut(s) 522, 747
BsaJI CCNNGG 2 cut(s) 678, 746
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 1158, 1188
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
Bse1I ACTGG 2 cut(s) 302, 772
BseDI CCNNGG 2 cut(s) 678, 746
BseGI GGATG 2 cut(s) 472, 1031
BseLI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
BseMII CTCAG 4 cut(s) 777, 820, 966, 1336
BseNI ACTGG 2 cut(s) 302, 772
BseRI GAGGAG 3 cut(s) 287, 464, 494
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 1 cut(s) 1194
BsgI GTGCAG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 4 cut(s) 188, 817, 930, 1203
BshNI GGYRCC 3 cut(s) 674, 736, 858
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 1234
BsiSI CCGG 3 cut(s) 521, 746, 924
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 1153
BsnI GGCC 4 cut(s) 188, 817, 930, 1203
Bsp1286I GDGCHC 3 cut(s) 739, 1171, 1234
Bsp143I GATC 2 cut(s) 1044, 1275
Bsp1720I GCTNAGC 1 cut(s) 806
BspACI CCGC 4 cut(s) 56, 810, 835, 844
BspANI GGCC 4 cut(s) 188, 817, 930, 1203
BspCNI CTCAG 4 cut(s) 778, 819, 967, 1335
BspLI GGNNCC 4 cut(s) 676, 738, 860, 1168
BspQI GCTCTTC 1 cut(s) 845
BspT107I GGYRCC 3 cut(s) 674, 736, 858
BsrI ACTGG 2 cut(s) 302, 772
BssECI CCNNGG 2 cut(s) 678, 746
BssMI GATC 2 cut(s) 1044, 1275
BssSI CACGAG 1 cut(s) 1227
Bst2BI CACGAG 1 cut(s) 1227
Bst4CI ACNGT 1 cut(s) 1144
Bst6I CTCTTC 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 957, 1205
BstDEI CTNAG 7 cut(s) 77, 612, 786, 806, 975, 1115, 1322
BstENI CCTNNNNNAGG 1 cut(s) 1118
BstF5I GGATG 2 cut(s) 472, 1031
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 1047, 1278
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 1044, 1275
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 4 cut(s) 283, 292, 751, 877
BstSCI CCNGG 2 cut(s) 520, 745
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 1 cut(s) 1194
BsuRI GGCC 4 cut(s) 188, 817, 930, 1203
BtsCI GGATG 2 cut(s) 472, 1031
Cac8I GCNNGC 2 cut(s) 957, 1205
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 816
Csp6I GTAC 4 cut(s) 234, 437, 505, 600
CviQI GTAC 4 cut(s) 234, 437, 505, 600
DdeI CTNAG 7 cut(s) 77, 612, 786, 806, 975, 1115, 1322
DpnI GATC 2 cut(s) 1046, 1277
DpnII GATC 2 cut(s) 1044, 1275
DraIII CACNNNGTG 1 cut(s) 865
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 845
EarI CTCTTC 1 cut(s) 845
Eco147I AGGCCT 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 1171
Eco57I CTGAAG 2 cut(s) 312, 1409
EcoNI CCTNNNNNAGG 1 cut(s) 1118
EcoT38I GRGCYC 1 cut(s) 1171
FalI AAGNNNNNCTT 2 cut(s) 1081, 1113
FaqI GGGAC 1 cut(s) 1153
Fnu4HI GCNGC 2 cut(s) 836, 1208
FokI GGATG 2 cut(s) 479, 1038
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 2 cut(s) 836, 1208
FspBI CTAG 4 cut(s) 204, 596, 1076, 1286
GlaI GCGC 1 cut(s) 369
GluI GCNGC 2 cut(s) 836, 1208
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 4 cut(s) 188, 817, 930, 1203
HapII CCGG 3 cut(s) 521, 746, 924
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 566, 1095
HinfI GANTC 5 cut(s) 44, 147, 344, 398, 1429
HpaII CCGG 3 cut(s) 521, 746, 924
HphI GGTGA 4 cut(s) 440, 536, 1196, 1303
Hpy166II GTNNAC 3 cut(s) 16, 609, 994
Hpy188I TCNGA 5 cut(s) 177, 231, 331, 349, 1381
Hpy188III TCNNGA 5 cut(s) 41, 715, 1177, 1307, 1414
Hpy8I GTNNAC 3 cut(s) 16, 609, 994
HpyAV CCTTC 5 cut(s) 306, 484, 941, 974, 1130
HpyCH4III ACNGT 1 cut(s) 1144
HpyCH4IV ACGT 2 cut(s) 194, 1020
HpyCH4V TGCA 2 cut(s) 1042, 1210
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 292, 751, 877
HpyF3I CTNAG 7 cut(s) 77, 612, 786, 806, 975, 1115, 1322
HpySE526I ACGT 2 cut(s) 194, 1020
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 1044, 1275
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 2 cut(s) 274, 1166
Lsp1109I GCAGC 1 cut(s) 1194
LweI GCATC 1 cut(s) 1016
MaeI CTAG 4 cut(s) 204, 596, 1076, 1286
MaeII ACGT 2 cut(s) 194, 1020
MaeIII GTNAC 1 cut(s) 621
MalI GATC 2 cut(s) 1046, 1277
MboI GATC 2 cut(s) 1044, 1275
MboII GAAGA 5 cut(s) 275, 428, 712, 832, 1285
MhlI GDGCHC 3 cut(s) 739, 1171, 1234
MlyI GAGTC 2 cut(s) 38, 141
MroXI GAANNNNTTC 2 cut(s) 383, 1240
MseI TTAA 6 cut(s) 60, 495, 980, 1109, 1146, 1266
MspA1I CMGCKG 1 cut(s) 810
MspI CCGG 3 cut(s) 521, 746, 924
MspR9I CCNGG 2 cut(s) 522, 747
MwoI GCNNNNNNNGC 4 cut(s) 283, 292, 751, 877
NciI CCSGG 2 cut(s) 522, 747
NdeII GATC 2 cut(s) 1044, 1275
NlaIV GGNNCC 4 cut(s) 676, 738, 860, 1168
NmeAIII GCCGAG 1 cut(s) 703
PceI AGGCCT 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PdmI GAANNNNTTC 2 cut(s) 383, 1240
PfeI GAWTC 3 cut(s) 344, 398, 1429
PkrI GCNGC 2 cut(s) 837, 1209
PleI GAGTC 2 cut(s) 38, 141
PpsI GAGTC 2 cut(s) 38, 141
PspN4I GGNNCC 4 cut(s) 676, 738, 860, 1168
PspPI GGNCC 1 cut(s) 816
RsaI GTAC 4 cut(s) 235, 438, 506, 601
RsaNI GTAC 4 cut(s) 234, 437, 505, 600
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 6 cut(s) 60, 495, 980, 1109, 1146, 1266
SatI GCNGC 2 cut(s) 836, 1208
Sau3AI GATC 2 cut(s) 1044, 1275
Sau96I GGNCC 1 cut(s) 816
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 2 cut(s) 38, 141
ScrFI CCNGG 2 cut(s) 522, 747
SduI GDGCHC 3 cut(s) 739, 1171, 1234
SfaNI GCATC 1 cut(s) 1016
SmlI CTYRAG 2 cut(s) 278, 1414
SmoI CTYRAG 2 cut(s) 278, 1414
SseBI AGGCCT 1 cut(s) 930
SsiI CCGC 4 cut(s) 56, 810, 835, 844
SspMI CTAG 4 cut(s) 204, 596, 1076, 1286
StuI AGGCCT 1 cut(s) 930
StyD4I CCNGG 2 cut(s) 520, 745
TaaI ACNGT 1 cut(s) 1144
TaiI ACGT 2 cut(s) 197, 1023
TaqI TCGA 7 cut(s) 219, 501, 694, 827, 1051, 1234, 1298
TatI WGTACW 2 cut(s) 436, 504
TauI GCSGC 1 cut(s) 838
TfiI GAWTC 3 cut(s) 344, 398, 1429
Tru1I TTAA 6 cut(s) 60, 495, 980, 1109, 1146, 1266
Tru9I TTAA 6 cut(s) 60, 495, 980, 1109, 1146, 1266
TseI GCWGC 1 cut(s) 1207
TspDTI ATGAA 6 cut(s) 110, 447, 486, 525, 903, 1442
TspGWI ACGGA 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 1118
XapI RAATTY 2 cut(s) 683, 1152
XmnI GAANNNNTTC 2 cut(s) 383, 1240
XspI CTAG 4 cut(s) 204, 596, 1076, 1286
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.