Ribosomal protein S1-like RNA-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G71720 AT1G71720 |
| fragaria_vesca | FvH4_2g12900 |
| malus_domestica | MD05G1034600.v1.1 |
| prunus_persica | Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1 |
| pyrus_communis | pycom05g02520 |
| rosa_chinensis | RchiOBHm_Chr6g0274001 |
| rosa_laevigata | RLG00000013585 |
| rosa_multiflora | Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020 |
| rosa_roxburghii | Rroxscaffold_7G00194800 |
| rosa_rugosa | Rorug06G0078200 |
| rosa_samantha | Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200 |
| rosa_wichuraiana | Rw6G016900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcsI | RAATTY | 4 cut(s) | 171, 181, 743, 1580 |
| AcuI | CTGAAG | 1 cut(s) | 801 |
| AfaI | GTAC | 5 cut(s) | 253, 566, 661, 1440, 1472 |
| AfeI | AGCGCT | 1 cut(s) | 87 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 194, 581, 1236 |
| AflII | CTTAAG | 1 cut(s) | 1319 |
| AgsI | TTSAA | 9 cut(s) | 70, 290, 436, 824, 888, 959, 1400, 1579, 1586 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1290 |
| AjiI | CACGTC | 1 cut(s) | 634 |
| AjnI | CCWGG | 2 cut(s) | 805, 1408 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1451 |
| Aor51HI | AGCGCT | 1 cut(s) | 87 |
| AoxI | GGCC | 6 cut(s) | 261, 417, 812, 875, 988, 1411 |
| ApeKI | GCWGC | 4 cut(s) | 55, 682, 1267, 1483 |
| ApoI | RAATTY | 4 cut(s) | 171, 181, 743, 1580 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 440, 1058, 1574 |
| AspLEI | GCGC | 3 cut(s) | 88, 207, 427 |
| AsuC2I | CCSGG | 2 cut(s) | 582, 1497 |
| AsuHPI | GGTGA | 3 cut(s) | 8, 503, 596 |
| BalI | TGGCCA | 1 cut(s) | 263 |
| BanII | GRGCYC | 1 cut(s) | 1231 |
| BauI | CACGAG | 1 cut(s) | 1287 |
| BbvCI | CCTCAGC | 1 cut(s) | 846 |
| BbvI | GCAGC | 4 cut(s) | 67, 669, 1254, 1470 |
| BccI | CCATC | 6 cut(s) | 458, 464, 697, 757, 785, 1453 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1091, 1125 |
| BciT130I | CCWGG | 2 cut(s) | 807, 1410 |
| BcnI | CCSGG | 2 cut(s) | 582, 1497 |
| BfaI | CTAG | 4 cut(s) | 177, 222, 314, 891 |
| BfmI | CTRYAG | 2 cut(s) | 53, 459 |
| BfoI | RGCGCY | 2 cut(s) | 89, 428 |
| BfrI | CTTAAG | 1 cut(s) | 1319 |
| BisI | GCNGC | 4 cut(s) | 56, 683, 1268, 1484 |
| BlsI | GCNGC | 4 cut(s) | 57, 684, 1269, 1485 |
| BmcAI | AGTACT | 2 cut(s) | 566, 1440 |
| Bme1390I | CCNGG | 4 cut(s) | 582, 807, 1410, 1497 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1290 |
| BmgBI | CACGTC | 1 cut(s) | 634 |
| BmiI | GGNNCC | 1 cut(s) | 1228 |
| BmrFI | CCNGG | 4 cut(s) | 582, 807, 1410, 1497 |
| BmsI | GCATC | 6 cut(s) | 105, 724, 928, 1076, 1083, 1519 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1008, 1040 |
| Bpu10I | CCTNAGC | 2 cut(s) | 421, 846 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BpuMI | CCSGG | 2 cut(s) | 582, 1497 |
| BsaJI | CCNNGG | 1 cut(s) | 806 |
| BsaWI | WCCGGW | 1 cut(s) | 983 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 270, 300, 459, 489, 1218, 1248 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 194, 581, 1236 |
| Bse1I | ACTGG | 2 cut(s) | 5, 832 |
| Bse3DI | GCAATG | 2 cut(s) | 207, 622 |
| BseBI | CCWGG | 2 cut(s) | 807, 1410 |
| BseDI | CCNNGG | 1 cut(s) | 806 |
| BseGI | GGATG | 5 cut(s) | 96, 532, 796, 1091, 1123 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 194, 581, 1236 |
| BseMI | GCAATG | 2 cut(s) | 207, 622 |
| BseMII | CTCAG | 4 cut(s) | 387, 837, 1026, 1396 |
| BseNI | ACTGG | 2 cut(s) | 5, 832 |
| BseXI | GCAGC | 4 cut(s) | 67, 669, 1254, 1470 |
| BsgI | GTGCAG | 2 cut(s) | 1121, 1253 |
| BshFI | GGCC | 6 cut(s) | 263, 419, 814, 877, 990, 1413 |
| BsiSI | CCGG | 4 cut(s) | 581, 904, 984, 1497 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 194, 581, 1236 |
| BsnI | GGCC | 6 cut(s) | 263, 419, 814, 877, 990, 1413 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1231 |
| Bsp143I | GATC | 1 cut(s) | 1335 |
| BspANI | GGCC | 6 cut(s) | 263, 419, 814, 877, 990, 1413 |
| BspCNI | CTCAG | 4 cut(s) | 388, 838, 1027, 1395 |
| BspLI | GGNNCC | 1 cut(s) | 1228 |
| BspMAI | CTGCAG | 2 cut(s) | 57, 463 |
| BspQI | GCTCTTC | 1 cut(s) | 294 |
| BspTI | CTTAAG | 1 cut(s) | 1319 |
| BsrDI | GCAATG | 2 cut(s) | 207, 622 |
| BsrI | ACTGG | 2 cut(s) | 5, 832 |
| BssECI | CCNNGG | 1 cut(s) | 806 |
| BssMI | GATC | 1 cut(s) | 1335 |
| BssSI | CACGAG | 1 cut(s) | 1287 |
| Bst2BI | CACGAG | 1 cut(s) | 1287 |
| Bst2UI | CCWGG | 2 cut(s) | 807, 1410 |
| Bst4CI | ACNGT | 1 cut(s) | 835 |
| Bst6I | CTCTTC | 3 cut(s) | 285, 294, 905 |
| BstAFI | CTTAAG | 1 cut(s) | 1319 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1483 |
| BstC8I | GCNNGC | 6 cut(s) | 90, 94, 203, 1017, 1265, 1488 |
| BstDEI | CTNAG | 9 cut(s) | 396, 421, 672, 846, 866, 1035, 1125, 1135, 1382 |
| BstF5I | GGATG | 5 cut(s) | 96, 532, 796, 1091, 1123 |
| BstH2I | RGCGCY | 2 cut(s) | 89, 428 |
| BstHHI | GCGC | 3 cut(s) | 88, 207, 427 |
| BstKTI | GATC | 1 cut(s) | 1338 |
| BstMBI | GATC | 1 cut(s) | 1335 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 310, 319, 1483 |
| BstNI | CCWGG | 2 cut(s) | 807, 1410 |
| BstNSI | RCATGY | 2 cut(s) | 1100, 1558 |
| BstSCI | CCNGG | 4 cut(s) | 580, 805, 1408, 1495 |
| BstSFI | CTRYAG | 2 cut(s) | 53, 459 |
| BstV1I | GCAGC | 4 cut(s) | 67, 669, 1254, 1470 |
| BsuRI | GGCC | 6 cut(s) | 263, 419, 814, 877, 990, 1413 |
| BtgZI | GCGATG | 1 cut(s) | 1542 |
| BtrI | CACGTC | 1 cut(s) | 634 |
| BtsCI | GGATG | 5 cut(s) | 96, 532, 796, 1091, 1123 |
| BtsI | GCAGTG | 1 cut(s) | 1386 |
| BtsIMutI | CAGTG | 3 cut(s) | 1062, 1315, 1386 |
| Cac8I | GCNNGC | 6 cut(s) | 90, 94, 203, 1017, 1265, 1488 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1451 |
| CfoI | GCGC | 3 cut(s) | 88, 207, 427 |
| CseI | GACGC | 1 cut(s) | 110 |
| Csp6I | GTAC | 5 cut(s) | 252, 565, 660, 1439, 1471 |
| CviAII | CATG | 4 cut(s) | 1097, 1114, 1282, 1555 |
| CviQI | GTAC | 5 cut(s) | 252, 565, 660, 1439, 1471 |
| DdeI | CTNAG | 9 cut(s) | 396, 421, 672, 846, 866, 1035, 1125, 1135, 1382 |
| DpnI | GATC | 1 cut(s) | 1337 |
| DpnII | GATC | 1 cut(s) | 1335 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1290 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 3 cut(s) | 285, 294, 905 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1290 |
| EarI | CTCTTC | 3 cut(s) | 285, 294, 905 |
| Eco147I | AGGCCT | 4 cut(s) | 419, 814, 877, 990 |
| Eco24I | GRGCYC | 1 cut(s) | 1231 |
| Eco47III | AGCGCT | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 1 cut(s) | 801 |
| EcoRII | CCWGG | 2 cut(s) | 805, 1408 |
| EcoT22I | ATGCAT | 1 cut(s) | 1098 |
| EcoT38I | GRGCYC | 1 cut(s) | 1231 |
| FaeI | CATG | 4 cut(s) | 1100, 1117, 1285, 1558 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1118, 1150, 1173, 1205 |
| FatI | CATG | 4 cut(s) | 1096, 1113, 1281, 1554 |
| FauNDI | CATATG | 1 cut(s) | 1222 |
| Fnu4HI | GCNGC | 4 cut(s) | 56, 683, 1268, 1484 |
| FokI | GGATG | 5 cut(s) | 83, 539, 803, 1098, 1130 |
| FriOI | GRGCYC | 1 cut(s) | 1231 |
| Fsp4HI | GCNGC | 4 cut(s) | 56, 683, 1268, 1484 |
| FspBI | CTAG | 4 cut(s) | 177, 222, 314, 891 |
| GlaI | GCGC | 3 cut(s) | 87, 206, 426 |
| GluI | GCNGC | 4 cut(s) | 56, 683, 1268, 1484 |
| HaeII | RGCGCY | 2 cut(s) | 89, 428 |
| HaeIII | GGCC | 6 cut(s) | 263, 419, 814, 877, 990, 1413 |
| HapII | CCGG | 4 cut(s) | 581, 904, 984, 1497 |
| HgaI | GACGC | 1 cut(s) | 110 |
| HhaI | GCGC | 3 cut(s) | 88, 207, 427 |
| Hin1II | CATG | 4 cut(s) | 1100, 1117, 1285, 1558 |
| Hin6I | GCGC | 3 cut(s) | 86, 205, 425 |
| HinP1I | GCGC | 3 cut(s) | 86, 205, 425 |
| HincII | GTYRAC | 1 cut(s) | 669 |
| HindII | GTYRAC | 1 cut(s) | 669 |
| HindIII | AAGCTT | 2 cut(s) | 401, 1155 |
| HinfI | GANTC | 7 cut(s) | 44, 371, 392, 455, 897, 1285, 1514 |
| HpaII | CCGG | 4 cut(s) | 581, 904, 984, 1497 |
| HphI | GGTGA | 3 cut(s) | 8, 503, 596 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 669, 1054, 1406 |
| Hpy188I | TCNGA | 6 cut(s) | 274, 358, 376, 397, 1447, 1513 |
| Hpy188III | TCNNGA | 2 cut(s) | 433, 1367 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 669, 1054, 1406 |
| HpyAV | CCTTC | 7 cut(s) | 46, 269, 333, 544, 1001, 1175, 1190 |
| HpyCH4III | ACNGT | 1 cut(s) | 835 |
| HpyCH4IV | ACGT | 2 cut(s) | 240, 633 |
| HpyCH4V | TGCA | 8 cut(s) | 55, 92, 116, 461, 1096, 1102, 1270, 1562 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 310, 319, 1483 |
| HpyF3I | CTNAG | 9 cut(s) | 396, 421, 672, 846, 866, 1035, 1125, 1135, 1382 |
| HpySE526I | ACGT | 2 cut(s) | 240, 633 |
| Hsp92II | CATG | 4 cut(s) | 1100, 1117, 1285, 1558 |
| HspAI | GCGC | 3 cut(s) | 86, 205, 425 |
| Kzo9I | GATC | 1 cut(s) | 1335 |
| LguI | GCTCTTC | 1 cut(s) | 294 |
| LmnI | GCTCC | 3 cut(s) | 644, 797, 1226 |
| Lsp1109I | GCAGC | 4 cut(s) | 67, 669, 1254, 1470 |
| LweI | GCATC | 6 cut(s) | 105, 724, 928, 1076, 1083, 1519 |
| MaeI | CTAG | 4 cut(s) | 177, 222, 314, 891 |
| MaeII | ACGT | 2 cut(s) | 240, 633 |
| MaeIII | GTNAC | 3 cut(s) | 961, 1167, 1310 |
| MalI | GATC | 1 cut(s) | 1337 |
| MboI | GATC | 1 cut(s) | 1335 |
| MboII | GAAGA | 8 cut(s) | 302, 311, 491, 554, 772, 870, 892, 1345 |
| MfeI | CAATTG | 1 cut(s) | 111 |
| MhlI | GDGCHC | 1 cut(s) | 1231 |
| MlsI | TGGCCA | 1 cut(s) | 263 |
| MluNI | TGGCCA | 1 cut(s) | 263 |
| MlyI | GAGTC | 3 cut(s) | 38, 891, 1279 |
| Mox20I | TGGCCA | 1 cut(s) | 263 |
| Mph1103I | ATGCAT | 1 cut(s) | 1098 |
| MroXI | GAANNNNTTC | 3 cut(s) | 440, 1058, 1574 |
| MscI | TGGCCA | 1 cut(s) | 263 |
| MseI | TTAA | 9 cut(s) | 60, 339, 555, 1176, 1206, 1320, 1326, 1424, 1550 |
| Msp20I | TGGCCA | 1 cut(s) | 263 |
| MspCI | CTTAAG | 1 cut(s) | 1319 |
| MspI | CCGG | 4 cut(s) | 581, 904, 984, 1497 |
| MspR9I | CCNGG | 4 cut(s) | 582, 807, 1410, 1497 |
| MunI | CAATTG | 1 cut(s) | 111 |
| MvaI | CCWGG | 2 cut(s) | 807, 1410 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 310, 319, 1483 |
| NciI | CCSGG | 2 cut(s) | 582, 1497 |
| NdeI | CATATG | 1 cut(s) | 1222 |
| NdeII | GATC | 1 cut(s) | 1335 |
| NlaIII | CATG | 4 cut(s) | 1100, 1117, 1285, 1558 |
| NlaIV | GGNNCC | 1 cut(s) | 1228 |
| NmuCI | GTSAC | 1 cut(s) | 1310 |
| NsiI | ATGCAT | 1 cut(s) | 1098 |
| NspI | RCATGY | 2 cut(s) | 1100, 1558 |
| PceI | AGGCCT | 4 cut(s) | 419, 814, 877, 990 |
| PciSI | GCTCTTC | 1 cut(s) | 294 |
| PdmI | GAANNNNTTC | 3 cut(s) | 440, 1058, 1574 |
| PfeI | GAWTC | 4 cut(s) | 371, 392, 455, 1514 |
| PkrI | GCNGC | 4 cut(s) | 57, 684, 1269, 1485 |
| PleI | GAGTC | 3 cut(s) | 38, 891, 1279 |
| PpsI | GAGTC | 3 cut(s) | 38, 891, 1279 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp6I | CCWGG | 2 cut(s) | 805, 1408 |
| PspGI | CCWGG | 2 cut(s) | 805, 1408 |
| PspN4I | GGNNCC | 1 cut(s) | 1228 |
| PstI | CTGCAG | 2 cut(s) | 57, 463 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1451 |
| RsaI | GTAC | 5 cut(s) | 253, 566, 661, 1440, 1472 |
| RsaNI | GTAC | 5 cut(s) | 252, 565, 660, 1439, 1471 |
| SapI | GCTCTTC | 1 cut(s) | 294 |
| SaqAI | TTAA | 9 cut(s) | 60, 339, 555, 1176, 1206, 1320, 1326, 1424, 1550 |
| SatI | GCNGC | 4 cut(s) | 56, 683, 1268, 1484 |
| Sau3AI | GATC | 1 cut(s) | 1335 |
| ScaI | AGTACT | 2 cut(s) | 566, 1440 |
| SchI | GAGTC | 3 cut(s) | 38, 891, 1279 |
| ScrFI | CCNGG | 4 cut(s) | 582, 807, 1410, 1497 |
| SduI | GDGCHC | 1 cut(s) | 1231 |
| SfaNI | GCATC | 6 cut(s) | 105, 724, 928, 1076, 1083, 1519 |
| SfcI | CTRYAG | 2 cut(s) | 53, 459 |
| SmlI | CTYRAG | 2 cut(s) | 305, 1319 |
| SmoI | CTYRAG | 2 cut(s) | 305, 1319 |
| SseBI | AGGCCT | 4 cut(s) | 419, 814, 877, 990 |
| SspMI | CTAG | 4 cut(s) | 177, 222, 314, 891 |
| StuI | AGGCCT | 4 cut(s) | 419, 814, 877, 990 |
| StyD4I | CCNGG | 4 cut(s) | 580, 805, 1408, 1495 |
| TaaI | ACNGT | 1 cut(s) | 835 |
| TaiI | ACGT | 2 cut(s) | 243, 636 |
| TaqI | TCGA | 3 cut(s) | 248, 922, 1294 |
| TatI | WGTACW | 3 cut(s) | 564, 1438, 1470 |
| TfiI | GAWTC | 4 cut(s) | 371, 392, 455, 1514 |
| Tru1I | TTAA | 9 cut(s) | 60, 339, 555, 1176, 1206, 1320, 1326, 1424, 1550 |
| Tru9I | TTAA | 9 cut(s) | 60, 339, 555, 1176, 1206, 1320, 1326, 1424, 1550 |
| TscAI | CASTG | 3 cut(s) | 1069, 1315, 1393 |
| TseFI | GTSAC | 1 cut(s) | 1310 |
| TseI | GCWGC | 4 cut(s) | 55, 682, 1267, 1483 |
| Tsp45I | GTSAC | 1 cut(s) | 1310 |
| TspDTI | ATGAA | 7 cut(s) | 312, 395, 546, 585, 633, 963, 1134 |
| TspGWI | ACGGA | 1 cut(s) | 740 |
| TspRI | CASTG | 3 cut(s) | 1069, 1315, 1393 |
| Vha464I | CTTAAG | 1 cut(s) | 1319 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XapI | RAATTY | 4 cut(s) | 171, 181, 743, 1580 |
| XceI | RCATGY | 2 cut(s) | 1100, 1558 |
| XmnI | GAANNNNTTC | 3 cut(s) | 440, 1058, 1574 |
| XspI | CTAG | 4 cut(s) | 177, 222, 314, 891 |
| ZrmI | AGTACT | 2 cut(s) | 566, 1440 |
| Zsp2I | ATGCAT | 1 cut(s) | 1098 |