Rw6G016900

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013437
Physical Location & Seq
Reverse (-)
33311379 .. 33317606
6228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016900.1

Sequence Viewer

Length: 1530 bp
ATGCTACTCCTTGTCCACCCCTGTAAGTCTCTCTCTTTTCCCGACTCCCCACCACCGCTTAACACCTTCCACACACTAAGACCAACCATCCCAAATTACTCAATTCCAAAACCTCCAATTCATACCTCATTTGGGTTTCCTACAAGACTCGTAATTTCCAAGATTTTTCCACTTCGGAGAAGTTCGGCCATCACGTTTTGCTCTAGGAATGATGTTTTCGATGTTTTTCCGAGTACCCATAAGGCGAACGGGGTGGAAATGGAAGAAAACGAAGAGCTTGAGTTGCTAAACAAGCCTTCCCCAGTTCCTATGGATAATGGGTCTGCTTCAGAAGTAGATAAAGAATCTGAAAAAAACGAGGCTTTAGCGCCGTTTTTGAAGTTTTTCACGCCAAGAGATTCTGTGGAGCAAGTAGAAGAAAAGGGAGGTGATGAAGTAGAAGTGTTTGAGGAGAAAAGTGAAGTGGATGATGAAAACGAGGAGGTTGAGAAGGTCAGTGTCGAGTACTATGAACCGAAACCGGGTGATTTTGTGGTTGGTGTTGTTGTGTCGGGTAATGAGAATAAGCTTGATGTGAATGTTGGGGCAGACTTACTAGGTACAATGTTGACGAAGGAGGTGTTACCTTTGTATGACAAGGAGATGGAATACTTGCTCTGTGATACAAGTTATGGTGCCGAGGAATTTATGGTTCGAGGGAAGATGGGAATTGTCAAGAGTGAAGCTGTGAGAGGGGCACCAATGCCGGGGAAGCCTGTTGTGGAAACTGGAACTATTTTGTTTGCTGAGGTTCTTGGGAGAACGCTCAGCGGTCGGCCCTTGCTTTCGACAAGGCGGCTCTTCCGCAGGATTGCTTGGCACCGAGTGAGGCAGATAAAGCAACTCAATGAACCTATCAGCGTTAGAATTACAGAATGGAATACCGGAGGCCTTCTTACGAGAGTTGAGGGTTTGCGAGCTTTCCTTCCAAAAGCTGAGTTAATGAGCAGAGTGAACAACTTTACGGAGCTGAAAGAGAACGTGGGATGCCAGATGTATGTGCAGATCACTCGAATAGACGAAGCCAAGAATGACCTAGTATTGAGTGAAAGGGAAGCTTGGGAAATGTTAAACCTTAGAGAGGGAACACTATTAGAAGGGACTGTTAAGAAAATTTTTCCTTATGGAGCCCAAGTCAGGATAGGTGAAACTAACAGAAGTGGCCTGCTGCATATCTCAAACATCACTCGTGCTCGAATTACTTCTGTTGGCGACCTACTTTCTGTTAATGAGAAGATCAAAGTTCTAGTGGTGAAGTCGATGTTTCCTGATAAAATATCTCTCAGCATTGCAGACCTTGAGAGCGAGCCTGGCCTCTTTGTATCAAACAAAGAGAAATTTTTTTCAGAGGCTGAATTGATGGCAAAAAAGTATAGGCAAAAGCTGCCTGCTGTTCTATCTCGTAGGTCAGAATCCCCGCAAGGCAATTCTCTACCTTTTGATAGACTAAACATGTATGCAAATTGGAAGTGGTTCAAATTTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

509

Amino Acids

57.55

Weight (kDa)

5.72

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 373 - 432 2.2e-08 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 674, 736, 858
AciI CCGC 5 cut(s) 56, 810, 835, 844, 1457
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 4 cut(s) 683, 1152, 1376, 1517
AcuI CTGAAG 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 3 cut(s) 235, 506, 601
AfiI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
AflIII ACRYGT 1 cut(s) 1491
AgsI TTSAA 3 cut(s) 379, 1516, 1523
AjnI CCWGG 1 cut(s) 1348
AluBI AGCT 8 cut(s) 277, 568, 725, 959, 974, 1009, 1097, 1423
AluI AGCT 8 cut(s) 277, 568, 725, 959, 974, 1009, 1097, 1423
Alw21I GWGCWC 1 cut(s) 1234
Alw26I GTCTC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 1391
AoxI GGCC 5 cut(s) 186, 815, 928, 1201, 1351
ApeKI GCWGC 2 cut(s) 1207, 1423
ApoI RAATTY 4 cut(s) 683, 1152, 1376, 1517
Asp700I GAANNNNTTC 3 cut(s) 383, 1240, 1511
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 816
AsuC2I CCSGG 2 cut(s) 522, 747
AsuHPI GGTGA 4 cut(s) 440, 536, 1196, 1303
BaeGI GKGCMC 1 cut(s) 739
BanI GGYRCC 3 cut(s) 674, 736, 858
BanII GRGCYC 1 cut(s) 1171
BauI CACGAG 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 1234
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 2 cut(s) 1194, 1410
BccI CCATC 5 cut(s) 95, 197, 637, 697, 1393
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 1031, 1065
BciT130I CCWGG 1 cut(s) 1350
BcnI CCSGG 2 cut(s) 522, 747
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 4 cut(s) 204, 596, 1076, 1286
BfoI RGCGCY 1 cut(s) 371
BisI GCNGC 3 cut(s) 836, 1208, 1424
BlpI GCTNAGC 1 cut(s) 806
BlsI GCNGC 3 cut(s) 837, 1209, 1425
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 3 cut(s) 522, 747, 1350
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 4 cut(s) 676, 738, 860, 1168
BmrFI CCNGG 3 cut(s) 522, 747, 1350
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 806
BpuEI CTTGAG 2 cut(s) 299, 1358
BpuMI CCSGG 2 cut(s) 522, 747
BsaJI CCNNGG 2 cut(s) 678, 746
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
Bse1I ACTGG 2 cut(s) 302, 772
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 1 cut(s) 1350
BseDI CCNNGG 2 cut(s) 678, 746
BseGI GGATG 3 cut(s) 87, 472, 1031
BseLI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 4 cut(s) 777, 820, 966, 1336
BseNI ACTGG 2 cut(s) 302, 772
BseRI GAGGAG 2 cut(s) 464, 494
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 2 cut(s) 1194, 1410
BsgI GTGCAG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 5 cut(s) 188, 817, 930, 1203, 1353
BshNI GGYRCC 3 cut(s) 674, 736, 858
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 1234
BsiSI CCGG 3 cut(s) 521, 746, 924
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 5 cut(s) 132, 521, 746, 1120, 1176
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 1153
BsnI GGCC 5 cut(s) 188, 817, 930, 1203, 1353
Bsp1286I GDGCHC 3 cut(s) 739, 1171, 1234
Bsp143I GATC 2 cut(s) 1044, 1275
Bsp1720I GCTNAGC 1 cut(s) 806
BspACI CCGC 5 cut(s) 56, 810, 835, 844, 1457
BspANI GGCC 5 cut(s) 188, 817, 930, 1203, 1353
BspCNI CTCAG 4 cut(s) 778, 819, 967, 1335
BspLI GGNNCC 4 cut(s) 676, 738, 860, 1168
BspQI GCTCTTC 2 cut(s) 267, 845
BspT107I GGYRCC 3 cut(s) 674, 736, 858
BsrDI GCAATG 1 cut(s) 1326
BsrI ACTGG 2 cut(s) 302, 772
BssECI CCNNGG 2 cut(s) 678, 746
BssMI GATC 2 cut(s) 1044, 1275
BssSI CACGAG 1 cut(s) 1227
Bst2BI CACGAG 1 cut(s) 1227
Bst2UI CCWGG 1 cut(s) 1350
Bst4CI ACNGT 1 cut(s) 1144
Bst6I CTCTTC 2 cut(s) 267, 845
BstAPI GCANNNNNTGC 1 cut(s) 1423
BstC8I GCNNGC 4 cut(s) 957, 1205, 1346, 1428
BstDEI CTNAG 6 cut(s) 77, 786, 806, 975, 1115, 1322
BstENI CCTNNNNNAGG 1 cut(s) 1118
BstF5I GGATG 3 cut(s) 87, 472, 1031
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 1047, 1278
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 1044, 1275
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 6 cut(s) 283, 292, 751, 877, 1350, 1423
BstNI CCWGG 1 cut(s) 1350
BstNSI RCATGY 1 cut(s) 1495
BstSCI CCNGG 3 cut(s) 520, 745, 1348
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 2 cut(s) 1194, 1410
BsuRI GGCC 5 cut(s) 188, 817, 930, 1203, 1353
BtsCI GGATG 3 cut(s) 87, 472, 1031
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 4 cut(s) 957, 1205, 1346, 1428
CaiI CAGNNNCTG 1 cut(s) 1391
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 816
Csp6I GTAC 3 cut(s) 234, 505, 600
CviAII CATG 1 cut(s) 1492
CviQI GTAC 3 cut(s) 234, 505, 600
DdeI CTNAG 6 cut(s) 77, 786, 806, 975, 1115, 1322
DpnI GATC 2 cut(s) 1046, 1277
DpnII GATC 2 cut(s) 1044, 1275
DraIII CACNNNGTG 1 cut(s) 865
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 267, 845
EarI CTCTTC 2 cut(s) 267, 845
Eco147I AGGCCT 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 1118
EcoRII CCWGG 1 cut(s) 1348
EcoT38I GRGCYC 1 cut(s) 1171
FaeI CATG 1 cut(s) 1495
FalI AAGNNNNNCTT 2 cut(s) 1081, 1113
FaqI GGGAC 1 cut(s) 1153
FatI CATG 1 cut(s) 1491
FauI CCCGC 1 cut(s) 1464
Fnu4HI GCNGC 3 cut(s) 836, 1208, 1424
FokI GGATG 3 cut(s) 74, 479, 1038
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 3 cut(s) 836, 1208, 1424
FspBI CTAG 4 cut(s) 204, 596, 1076, 1286
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 836, 1208, 1424
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 5 cut(s) 188, 817, 930, 1203, 1353
HapII CCGG 3 cut(s) 521, 746, 924
HhaI GCGC 1 cut(s) 370
Hin1II CATG 1 cut(s) 1495
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 566, 1095
HinfI GANTC 5 cut(s) 44, 147, 344, 398, 1451
HpaII CCGG 3 cut(s) 521, 746, 924
HphI GGTGA 4 cut(s) 440, 536, 1196, 1303
Hpy166II GTNNAC 3 cut(s) 16, 609, 994
Hpy188I TCNGA 6 cut(s) 177, 231, 331, 349, 1387, 1450
Hpy188III TCNNGA 4 cut(s) 41, 715, 1177, 1307
Hpy8I GTNNAC 3 cut(s) 16, 609, 994
HpyAV CCTTC 7 cut(s) 76, 306, 484, 607, 941, 974, 1130
HpyCH4III ACNGT 1 cut(s) 1144
HpyCH4IV ACGT 2 cut(s) 194, 1020
HpyCH4V TGCA 4 cut(s) 1042, 1210, 1331, 1499
HpyF10VI GCNNNNNNNGC 6 cut(s) 283, 292, 751, 877, 1350, 1423
HpyF3I CTNAG 6 cut(s) 77, 786, 806, 975, 1115, 1322
HpySE526I ACGT 2 cut(s) 194, 1020
Hsp92II CATG 1 cut(s) 1495
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 1044, 1275
LguI GCTCTTC 2 cut(s) 267, 845
LmnI GCTCC 3 cut(s) 406, 1006, 1166
Lsp1109I GCAGC 2 cut(s) 1194, 1410
LweI GCATC 1 cut(s) 1016
MaeI CTAG 4 cut(s) 204, 596, 1076, 1286
MaeII ACGT 2 cut(s) 194, 1020
MaeIII GTNAC 1 cut(s) 621
MalI GATC 2 cut(s) 1046, 1277
MboI GATC 2 cut(s) 1044, 1275
MboII GAAGA 6 cut(s) 275, 284, 428, 712, 832, 1285
MhlI GDGCHC 3 cut(s) 739, 1171, 1234
MlyI GAGTC 2 cut(s) 38, 141
MroXI GAANNNNTTC 3 cut(s) 383, 1240, 1511
MseI TTAA 5 cut(s) 60, 980, 1109, 1146, 1266
MspA1I CMGCKG 1 cut(s) 810
MspI CCGG 3 cut(s) 521, 746, 924
MspR9I CCNGG 3 cut(s) 522, 747, 1350
MvaI CCWGG 1 cut(s) 1350
MwoI GCNNNNNNNGC 6 cut(s) 283, 292, 751, 877, 1350, 1423
NciI CCSGG 2 cut(s) 522, 747
NdeII GATC 2 cut(s) 1044, 1275
NlaIII CATG 1 cut(s) 1495
NlaIV GGNNCC 4 cut(s) 676, 738, 860, 1168
NmeAIII GCCGAG 1 cut(s) 703
NspI RCATGY 1 cut(s) 1495
PceI AGGCCT 1 cut(s) 930
PciI ACATGT 1 cut(s) 1491
PciSI GCTCTTC 2 cut(s) 267, 845
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PdmI GAANNNNTTC 3 cut(s) 383, 1240, 1511
PfeI GAWTC 3 cut(s) 344, 398, 1451
PkrI GCNGC 3 cut(s) 837, 1209, 1425
PleI GAGTC 2 cut(s) 38, 141
PpsI GAGTC 2 cut(s) 38, 141
PscI ACATGT 1 cut(s) 1491
Psp6I CCWGG 1 cut(s) 1348
PspGI CCWGG 1 cut(s) 1348
PspN4I GGNNCC 4 cut(s) 676, 738, 860, 1168
PspPI GGNCC 1 cut(s) 816
PstNI CAGNNNCTG 1 cut(s) 1391
RsaI GTAC 3 cut(s) 235, 506, 601
RsaNI GTAC 3 cut(s) 234, 505, 600
SapI GCTCTTC 2 cut(s) 267, 845
SaqAI TTAA 5 cut(s) 60, 980, 1109, 1146, 1266
SatI GCNGC 3 cut(s) 836, 1208, 1424
Sau3AI GATC 2 cut(s) 1044, 1275
Sau96I GGNCC 1 cut(s) 816
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 2 cut(s) 38, 141
ScrFI CCNGG 3 cut(s) 522, 747, 1350
SduI GDGCHC 3 cut(s) 739, 1171, 1234
SfaNI GCATC 1 cut(s) 1016
SmlI CTYRAG 2 cut(s) 278, 1337
SmoI CTYRAG 2 cut(s) 278, 1337
SseBI AGGCCT 1 cut(s) 930
SsiI CCGC 5 cut(s) 56, 810, 835, 844, 1457
SspMI CTAG 4 cut(s) 204, 596, 1076, 1286
StuI AGGCCT 1 cut(s) 930
StyD4I CCNGG 3 cut(s) 520, 745, 1348
TaaI ACNGT 1 cut(s) 1144
TaiI ACGT 2 cut(s) 197, 1023
TaqI TCGA 7 cut(s) 219, 501, 694, 827, 1051, 1234, 1298
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 838
TfiI GAWTC 3 cut(s) 344, 398, 1451
Tru1I TTAA 5 cut(s) 60, 980, 1109, 1146, 1266
Tru9I TTAA 5 cut(s) 60, 980, 1109, 1146, 1266
TscAI CASTG 1 cut(s) 502
TseI GCWGC 2 cut(s) 1207, 1423
TspDTI ATGAA 5 cut(s) 110, 447, 486, 525, 903
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 1118
XapI RAATTY 4 cut(s) 683, 1152, 1376, 1517
XceI RCATGY 1 cut(s) 1495
XmnI GAANNNNTTC 3 cut(s) 383, 1240, 1511
XspI CTAG 4 cut(s) 204, 596, 1076, 1286
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.