Rorug06G0078200

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013437
Physical Location & Seq
Reverse (-)
10459440 .. 10461308
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0078200.1

Sequence Viewer

Length: 735 bp
ATGGCAGCAAATGGAGAGGAGCAGAAAAGCAGGCACCAGGAAGTTGGCCACAAAAGCCTTCTTCAAAGTGATGCTCTTTACCAGTATATTTTGGAGACTAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAGCTCAGAGAGTTGACAGCAAAGCACCCATGGAACATCATGACCACTTCAGCTGATGAAGGTCAATTCTTGAACATGCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATTGGTGTCTACACTGGCTACTCCCTCTTGGCCACAGCCCTTGCTCTCCCTGAAGATGGAAAGATCTTGGCCATGGACATCAACAAAGAAAACTATGAATTGGGTCTCCCAGTCATCGAAAAAGCTGGTGTTGCCCACAAGATTGACTTCAGGGAAGGCCCTGCCCTCCCCGTCCTCGACCATATGATCGAAGATGAGAAGAATCATGGATCTTTCGACTTCATCTTCGTTGACGCAGACAAGGACAACTATATCAACTACCACAAGAGGCTGATCGACCTGGTCAAGGTCGGAGGCCTGATCGGCTACGACAACACCCTATGGAACGGCTCTGTGGTGGCACCACCTGATGCTCCTCTCCGCAAGTACGTCAGGTACTACAGGGACTTTGTGATCGAGCTCAACAAGGCTCTCGCAGCAGACCCCAGAATTGAGATTTGCATGCTTCCAGTTGGGGATGGCATCACTCTCTGCCGTCGGATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
S1

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

5.42

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 32 - 243 5.6e-99 O-methyltransferase
Methyltransf_24 PF13578 81 - 187 9.5e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71720 AT1G71720
fragaria_vesca FvH4_2g12900
malus_domestica MD05G1034600.v1.1
prunus_persica Prupe.8G042900_v2.0.a1 Prupe.8G042900_v2.0.a1
pyrus_communis pycom05g02520
rosa_chinensis RchiOBHm_Chr6g0274001
rosa_laevigata RLG00000013585
rosa_multiflora Rmu_sc0000045.1_g000088 Rmu_sc0002247.1_g000020
rosa_roxburghii Rroxscaffold_7G00194800
rosa_rugosa Rorug06G0078200
rosa_samantha Rh6AG193800 Rh6BG197400 Rh6CG197300 Rh6DG189200
rosa_wichuraiana Rw6G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 33, 586
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 607
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 3 cut(s) 46, 276, 315
AcuI CTGAAG 3 cut(s) 165, 318, 379
AfaI GTAC 3 cut(s) 107, 614, 623
AfiI CCNNNNNNNGG 2 cut(s) 302, 532
AgsI TTSAA 2 cut(s) 65, 205
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 2 cut(s) 36, 525
AluBI AGCT 5 cut(s) 136, 185, 220, 371, 646
AluI AGCT 5 cut(s) 136, 185, 220, 371, 646
Alw21I GWGCWC 2 cut(s) 138, 648
Alw26I GTCTC 2 cut(s) 89, 356
AlwI GGATC 1 cut(s) 463
AoxI GGCC 5 cut(s) 46, 276, 315, 403, 541
ApeKI GCWGC 2 cut(s) 5, 662
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspS9I GGNCC 1 cut(s) 404
BalI TGGCCA 3 cut(s) 48, 278, 317
BanI GGYRCC 2 cut(s) 33, 586
BanII GRGCYC 2 cut(s) 138, 648
Bbv12I GWGCWC 2 cut(s) 138, 648
BbvI GCAGC 2 cut(s) 17, 674
BccI CCATC 2 cut(s) 296, 698
BceAI ACGGC 2 cut(s) 589, 705
BciT130I CCWGG 2 cut(s) 38, 527
BcoDI GTCTC 2 cut(s) 89, 356
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 549
BglII AGATCT 1 cut(s) 309
BisI GCNGC 2 cut(s) 6, 663
BlsI GCNGC 2 cut(s) 7, 664
Bme1390I CCNGG 2 cut(s) 38, 527
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 35, 588
BmrFI CCNGG 2 cut(s) 38, 527
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 3 cut(s) 61, 586, 717
BmuI ACTGGG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 161, 240, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 532
Bse1I ACTGG 4 cut(s) 82, 265, 356, 695
BseBI CCWGG 2 cut(s) 38, 527
BseDI CCNNGG 3 cut(s) 161, 240, 318
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 302, 532
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 4 cut(s) 82, 265, 356, 695
BseRI GAGGAG 2 cut(s) 32, 591
BseXI GCAGC 2 cut(s) 17, 674
BshFI GGCC 5 cut(s) 48, 278, 317, 405, 543
BshNI GGYRCC 2 cut(s) 33, 586
BsiHKAI GWGCWC 2 cut(s) 138, 648
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 302, 532
BsmAI GTCTC 2 cut(s) 89, 356
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 5 cut(s) 48, 278, 317, 405, 543
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 138, 648
Bsp143I GATC 6 cut(s) 309, 432, 455, 519, 546, 639
Bsp19I CCATGG 3 cut(s) 161, 240, 318
BspACI CCGC 1 cut(s) 607
BspANI GGCC 5 cut(s) 48, 278, 317, 405, 543
BspCNI CTCAG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 35, 588
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 2 cut(s) 33, 586
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 4 cut(s) 82, 265, 356, 695
BssECI CCNNGG 3 cut(s) 161, 240, 318
BssMI GATC 6 cut(s) 309, 432, 455, 519, 546, 639
BssT1I CCWWGG 3 cut(s) 161, 240, 318
Bst2UI CCWGG 2 cut(s) 38, 527
BstC8I GCNNGC 2 cut(s) 32, 689
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 3 cut(s) 161, 240, 318
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 6 cut(s) 312, 435, 458, 522, 549, 642
BstMAI GTCTC 2 cut(s) 89, 356
BstMBI GATC 6 cut(s) 309, 432, 455, 519, 546, 639
BstMWI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
BstNI CCWGG 2 cut(s) 38, 527
BstNSI RCATGY 2 cut(s) 211, 691
BstSCI CCNGG 2 cut(s) 36, 525
BstSFI CTRYAG 1 cut(s) 625
BstV1I GCAGC 2 cut(s) 17, 674
BstX2I RGATCY 2 cut(s) 309, 455
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 2 cut(s) 309, 455
BsuRI GGCC 5 cut(s) 48, 278, 317, 405, 543
BtgI CCRYGG 3 cut(s) 161, 240, 318
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 32, 689
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 1 cut(s) 488
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 3 cut(s) 106, 613, 622
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 8 cut(s) 127, 162, 172, 208, 241, 319, 452, 688
CviQI GTAC 3 cut(s) 106, 613, 622
DdeI CTNAG 1 cut(s) 137
DpnI GATC 6 cut(s) 311, 434, 457, 521, 548, 641
DpnII GATC 6 cut(s) 309, 432, 455, 519, 546, 639
EaeI YGGCCR 3 cut(s) 46, 276, 315
Ecl136II GAGCTC 2 cut(s) 136, 646
Eco130I CCWWGG 3 cut(s) 161, 240, 318
Eco147I AGGCCT 1 cut(s) 543
Eco24I GRGCYC 2 cut(s) 138, 648
Eco31I GGTCTC 1 cut(s) 356
Eco53kI GAGCTC 2 cut(s) 136, 646
Eco57I CTGAAG 3 cut(s) 165, 318, 379
EcoICRI GAGCTC 2 cut(s) 136, 646
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 36, 525
EcoT14I CCWWGG 3 cut(s) 161, 240, 318
EcoT38I GRGCYC 2 cut(s) 138, 648
ErhI CCWWGG 3 cut(s) 161, 240, 318
FaeI CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 644
FatI CATG 8 cut(s) 126, 161, 171, 207, 240, 318, 451, 687
FauNDI CATATG 1 cut(s) 429
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 6, 663
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 2 cut(s) 138, 648
Fsp4HI GCNGC 2 cut(s) 6, 663
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 6, 663
HaeIII GGCC 5 cut(s) 48, 278, 317, 405, 543
HgaI GACGC 1 cut(s) 488
Hin1II CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
HincII GTYRAC 2 cut(s) 147, 478
HindII GTYRAC 2 cut(s) 147, 478
HinfI GANTC 2 cut(s) 122, 448
Hpy166II GTNNAC 4 cut(s) 106, 147, 256, 478
Hpy188I TCNGA 3 cut(s) 140, 539, 726
Hpy188III TCNNGA 2 cut(s) 172, 202
Hpy8I GTNNAC 4 cut(s) 106, 147, 256, 478
Hpy99I CGWCG 1 cut(s) 726
HpyAV CCTTC 4 cut(s) 68, 124, 185, 395
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 1 cut(s) 687
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
Kzo9I GATC 6 cut(s) 309, 432, 455, 519, 546, 639
LmnI GCTCC 3 cut(s) 19, 133, 604
Lsp1109I GCAGC 2 cut(s) 17, 674
LweI GCATC 3 cut(s) 61, 586, 717
MabI ACCWGGT 1 cut(s) 525
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 615
MalI GATC 6 cut(s) 311, 434, 457, 521, 548, 641
MboI GATC 6 cut(s) 309, 432, 455, 519, 546, 639
MboII GAAGA 5 cut(s) 53, 311, 449, 457, 463
MflI RGATCY 2 cut(s) 309, 455
MhlI GDGCHC 2 cut(s) 138, 648
MlsI TGGCCA 3 cut(s) 48, 278, 317
MluCI AATT 3 cut(s) 197, 344, 675
MluNI TGGCCA 3 cut(s) 48, 278, 317
MmeI TCCRAC 2 cut(s) 517, 704
MnlI CCTC 7 cut(s) 10, 281, 422, 431, 507, 533, 612
Mox20I TGGCCA 3 cut(s) 48, 278, 317
MscI TGGCCA 3 cut(s) 48, 278, 317
MseI TTAA 1 cut(s) 729
Msp20I TGGCCA 3 cut(s) 48, 278, 317
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 38, 527
MvaI CCWGG 2 cut(s) 38, 527
MwoI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
NcoI CCATGG 3 cut(s) 161, 240, 318
NdeI CATATG 1 cut(s) 429
NdeII GATC 6 cut(s) 309, 432, 455, 519, 546, 639
NlaIII CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
NlaIV GGNNCC 2 cut(s) 35, 588
NspI RCATGY 2 cut(s) 211, 691
PaeI GCATGC 1 cut(s) 691
PagI TCATGA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 543
PfeI GAWTC 2 cut(s) 122, 448
PflFI GACNNNGTC 1 cut(s) 527
PkrI GCNGC 2 cut(s) 7, 664
Psp124BI GAGCTC 2 cut(s) 138, 648
Psp6I CCWGG 2 cut(s) 36, 525
PspGI CCWGG 2 cut(s) 36, 525
PspN4I GGNNCC 2 cut(s) 35, 588
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 309, 455
PsyI GACNNNGTC 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 107, 614, 623
RsaNI GTAC 3 cut(s) 106, 613, 622
SacI GAGCTC 2 cut(s) 138, 648
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 6, 663
Sau3AI GATC 6 cut(s) 309, 432, 455, 519, 546, 639
Sau96I GGNCC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 38, 527
SduI GDGCHC 2 cut(s) 138, 648
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 3 cut(s) 61, 586, 717
SfcI CTRYAG 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 98
SphI GCATGC 1 cut(s) 691
Sse9I AATT 3 cut(s) 197, 344, 675
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 1 cut(s) 607
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 2 cut(s) 138, 648
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 36, 525
StyI CCWWGG 3 cut(s) 161, 240, 318
TaiI ACGT 1 cut(s) 618
TaqI TCGA 6 cut(s) 363, 423, 435, 462, 522, 642
TasI AATT 3 cut(s) 197, 344, 675
TfiI GAWTC 2 cut(s) 122, 448
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 5, 662
TspDTI ATGAA 4 cut(s) 143, 204, 357, 457
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 530
XceI RCATGY 2 cut(s) 211, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.