AT1G72020

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
27109291 .. 27110593
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72020.1

Sequence Viewer

Length: 294 bp
ATGGCGTTGAGCACCAGCATCAGATCTGTATCTAAGATCATTGCTTCTTCCGAAGCATCAGTCTCCAGATCTGTGACTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACATGGTGGTTACGATGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAAGCTCTCAAGATGTCTCTCGGTGTATTCACCGCTTTCAGCATCGGTGTTGGGGTTCCTATCTTCGCAGTCGTTTTCCAGCAGAGGAAGACTCAATCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.57

Weight (kDa)

10.14

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 3 cut(s) 114, 178, 222
AfaI GTAC 2 cut(s) 167, 188
AflIII ACRYGT 1 cut(s) 162
AluBI AGCT 2 cut(s) 84, 194
AluI AGCT 2 cut(s) 84, 194
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 67, 210
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 67, 210
BfaI CTAG 1 cut(s) 78
BglII AGATCT 2 cut(s) 23, 68
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 3 cut(s) 27, 65, 240
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 1 cut(s) 265
BpmI CTGGAG 2 cut(s) 49, 117
BpuEI CTTGAG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 28
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 67, 210
Bsp1286I GDGCHC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 23, 36, 68
BspACI CCGC 3 cut(s) 114, 178, 222
BspLI GGNNCC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 100
BssMI GATC 3 cut(s) 23, 36, 68
BstAUI TGTACA 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 3 cut(s) 26, 39, 71
BstMAI GTCTC 2 cut(s) 67, 210
BstMBI GATC 3 cut(s) 23, 36, 68
BstNSI RCATGY 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 2 cut(s) 23, 68
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 2 cut(s) 23, 68
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 166, 187
CviAII CATG 3 cut(s) 125, 163, 181
CviJI RGCY 2 cut(s) 84, 194
CviKI_1 RGCY 2 cut(s) 84, 194
CviQI GTAC 2 cut(s) 166, 187
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 25, 38, 70
DpnII GATC 3 cut(s) 23, 36, 68
Eco47I GGWCC 1 cut(s) 175
FaeI CATG 3 cut(s) 128, 166, 184
FaiI YATR 3 cut(s) 126, 164, 182
FatI CATG 3 cut(s) 124, 162, 180
FspBI CTAG 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 49, 117
Hin1II CATG 3 cut(s) 128, 166, 184
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 23, 52
Hpy188III TCNNGA 2 cut(s) 66, 199
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 3 cut(s) 128, 166, 184
Kzo9I GATC 3 cut(s) 23, 36, 68
LpnPI CCDG 5 cut(s) 28, 79, 81, 273, 281
LweI GCATC 3 cut(s) 27, 65, 240
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 73, 131
MalI GATC 3 cut(s) 25, 38, 70
MbiI CCGCTC 1 cut(s) 114
MboI GATC 3 cut(s) 23, 36, 68
MboII GAAGA 4 cut(s) 39, 118, 244, 289
MflI RGATCY 2 cut(s) 23, 68
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 4 cut(s) 110, 113, 158, 267
MseI TTAA 2 cut(s) 102, 292
NdeII GATC 3 cut(s) 23, 36, 68
NlaIII CATG 3 cut(s) 128, 166, 184
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 2 cut(s) 23, 68
RsaI GTAC 2 cut(s) 167, 188
RsaNI GTAC 2 cut(s) 166, 187
SaqAI TTAA 2 cut(s) 102, 292
Sau3AI GATC 3 cut(s) 23, 36, 68
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 86, 150, 196
SfaNI GCATC 3 cut(s) 27, 65, 240
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 169
SsiI CCGC 3 cut(s) 114, 178, 222
SspMI CTAG 1 cut(s) 78
TaqI TCGA 1 cut(s) 92
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 165
Tru1I TTAA 2 cut(s) 102, 292
Tru9I TTAA 2 cut(s) 102, 292
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 153, 197
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 166
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.