Prupe.1G506700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016164
Physical Location & Seq
Forward (+)
41834877 .. 41837294
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G506700.1

Sequence Viewer

Length: 288 bp
ATGAGCATGAACGGTGGGATCCGGACCTGCGCAAAGTTGGTGAGGGCTTCAGAAGGATCTCTATCAAAATCAGGAACTAGAGGGTTCCACTCAACCGGAGTGAAGAGAATGGGTGGACATGGCCATGATGAACCATACTACCTTCATGCCAAACACATGTACAACTTGGACAGGATGTCGCACCAGAAGTTGAAGGTGACCCTTGGAGTGTTCACGGCCTTCAGCATCGGCGTGGCTGTTCCTATTTGGGCTGTCCATTTCCAACAAAAGAAAACCGCCTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.39

Weight (kDa)

10.24

Isoelectric Point (pI)

22.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 1 cut(s) 276
AclWI GGATC 3 cut(s) 13, 26, 64
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 2 cut(s) 33, 205
AfaI GTAC 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 193
AhdI GACNNNNNGTC 1 cut(s) 175
AlwI GGATC 3 cut(s) 13, 26, 64
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 121, 216
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 52, 208
AvaII GGWCC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 123
BamHI GGATCC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 231
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 24
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 20, 86
BmsI GCATC 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 2 cut(s) 21, 95
Bse8I GATNNNNATC 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 61
BshFI GGCC 2 cut(s) 123, 218
BsiSI CCGG 2 cut(s) 22, 96
BsnI GGCC 2 cut(s) 123, 218
Bsp13I TCCGGA 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 18, 56
BspACI CCGC 1 cut(s) 276
BspANI GGCC 2 cut(s) 123, 218
BspEI TCCGGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 20, 86
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 3 cut(s) 13, 26, 64
BsrGI TGTACA 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 18, 56
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 21, 59
BstMBI GATC 2 cut(s) 18, 56
BstNSI RCATGY 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 18, 56
BstYI RGATCY 2 cut(s) 18, 56
BsuRI GGCC 2 cut(s) 123, 218
BtsCI GGATG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 160
CviAII CATG 5 cut(s) 7, 119, 125, 146, 157
CviJI RGCY 5 cut(s) 47, 123, 218, 236, 251
CviKI_1 RGCY 5 cut(s) 47, 123, 218, 236, 251
CviQI GTAC 1 cut(s) 160
DpnI GATC 2 cut(s) 20, 58
DpnII GATC 2 cut(s) 18, 56
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 33, 205
Eco91I GGTNACC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 5 cut(s) 10, 122, 128, 149, 160
FaiI YATR 6 cut(s) 8, 120, 126, 136, 147, 158
FatI CATG 5 cut(s) 6, 118, 124, 145, 156
FokI GGATG 1 cut(s) 187
FspBI CTAG 1 cut(s) 78
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 123, 218
HapII CCGG 2 cut(s) 22, 96
HhaI GCGC 1 cut(s) 32
Hin1II CATG 5 cut(s) 10, 122, 128, 149, 160
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HpaII CCGG 2 cut(s) 22, 96
HphI GGTGA 2 cut(s) 52, 208
Hpy166II GTNNAC 2 cut(s) 116, 213
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 22, 72
Hpy8I GTNNAC 2 cut(s) 116, 213
HpyAV CCTTC 4 cut(s) 47, 152, 187, 229
HpyCH4III ACNGT 1 cut(s) 14
Hsp92II CATG 5 cut(s) 10, 122, 128, 149, 160
HspAI GCGC 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 18, 56
LpnPI CCDG 7 cut(s) 35, 40, 57, 109, 157, 197, 267
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 20, 58
MboI GATC 2 cut(s) 18, 56
MboII GAAGA 1 cut(s) 115
MflI RGATCY 2 cut(s) 18, 56
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 2 cut(s) 36, 74
Mox20I TGGCCA 1 cut(s) 123
MroI TCCGGA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 123
MslI CAYNNNNRTG 2 cut(s) 123, 230
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 2 cut(s) 22, 96
NdeII GATC 2 cut(s) 18, 56
NlaIII CATG 5 cut(s) 10, 122, 128, 149, 160
NlaIV GGNNCC 2 cut(s) 20, 86
NmuCI GTSAC 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 31
NspI RCATGY 1 cut(s) 160
PciI ACATGT 1 cut(s) 156
PscI ACATGT 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 20, 86
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 18, 56
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 123, 230
Sau3AI GATC 2 cut(s) 18, 56
Sau96I GGNCC 1 cut(s) 24
SetI ASST 3 cut(s) 29, 144, 198
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 123, 230
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 14
TatI WGTACW 1 cut(s) 159
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 23, 134, 144
VpaK11BI GGWCC 1 cut(s) 24
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.