Rorug07G0338800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016164
Physical Location & Seq
Forward (+)
37300538 .. 37300936
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0338800.1

Sequence Viewer

Length: 399 bp
ATGCTTTCAACAACATCAGTTCTATCAACCTACACCACATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGAGGTCCAGACTATGGTCGGCCAGTTCATACCTCAAAAACTCCAGGACAAAATCATTGCCACACTTGCAGGCCTATTTGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAACAATGGCCTCTCTATCAATGAAGTTTACCAGGCTTCAGAACTCTACTTAAGCACAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGACGAGTTTGAAGGAATACAGTTGAGGTGGGAATTCTGTACGTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.72

Weight (kDa)

5.05

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 36 - 129 1.1e-24 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 91
AflII CTTAAG 2 cut(s) 247, 281
AgsI TTSAA 2 cut(s) 9, 359
AjnI CCWGG 2 cut(s) 120, 228
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
AlwI GGATC 1 cut(s) 266
AoxI GGCC 3 cut(s) 97, 148, 205
ApeKI GCWGC 3 cut(s) 44, 47, 50
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 31, 34, 62
BciT130I CCWGG 2 cut(s) 122, 230
BclI TGATCA 3 cut(s) 60, 72, 274
BfmI CTRYAG 1 cut(s) 48
BfrI CTTAAG 2 cut(s) 247, 281
BisI GCNGC 3 cut(s) 45, 48, 51
BlsI GCNGC 3 cut(s) 46, 49, 52
Bme1390I CCNGG 2 cut(s) 122, 230
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 122, 230
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 60, 132
BseBI CCWGG 2 cut(s) 122, 230
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 2 cut(s) 60, 132
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 31, 34, 62
BshFI GGCC 3 cut(s) 99, 150, 207
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 3 cut(s) 99, 150, 207
Bsp143I GATC 4 cut(s) 60, 72, 258, 274
BspANI GGCC 3 cut(s) 99, 150, 207
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 266
BspTI CTTAAG 2 cut(s) 247, 281
BsrDI GCAATG 2 cut(s) 60, 132
BsrI ACTGG 1 cut(s) 100
BssMI GATC 4 cut(s) 60, 72, 258, 274
Bst2UI CCWGG 2 cut(s) 122, 230
Bst4CI ACNGT 2 cut(s) 70, 369
BstAFI CTTAAG 2 cut(s) 247, 281
BstC8I GCNNGC 1 cut(s) 148
BstEII GGTNACC 1 cut(s) 158
BstKTI GATC 4 cut(s) 63, 75, 261, 277
BstMBI GATC 4 cut(s) 60, 72, 258, 274
BstMWI GCNNNNNNNGC 2 cut(s) 50, 143
BstNI CCWGG 2 cut(s) 122, 230
BstPAI GACNNNNGTC 1 cut(s) 92
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 120, 228
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 31, 34, 62
BsuRI GGCC 3 cut(s) 99, 150, 207
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 75, 82, 261
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 387
CviJI RGCY 5 cut(s) 99, 150, 207, 233, 343
CviKI_1 RGCY 5 cut(s) 99, 150, 207, 233, 343
CviQI GTAC 1 cut(s) 387
DpnI GATC 4 cut(s) 62, 74, 260, 276
DpnII GATC 4 cut(s) 60, 72, 258, 274
EaeI YGGCCR 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 120, 228
FaiI YATR 3 cut(s) 92, 107, 326
FaqI GGGAC 1 cut(s) 280
FbaI TGATCA 3 cut(s) 60, 72, 274
Fnu4HI GCNGC 3 cut(s) 45, 48, 51
Fsp4HI GCNGC 3 cut(s) 45, 48, 51
GluI GCNGC 3 cut(s) 45, 48, 51
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 3 cut(s) 99, 150, 207
HinfI GANTC 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 238, 398
Hpy188III TCNNGA 2 cut(s) 64, 85
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 173, 353
HpyCH4III ACNGT 2 cut(s) 70, 369
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 50, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 143
HpySE526I ACGT 1 cut(s) 389
Ksp22I TGATCA 3 cut(s) 60, 72, 274
Kzo9I GATC 4 cut(s) 60, 72, 258, 274
LpnPI CCDG 8 cut(s) 49, 98, 107, 113, 132, 134, 215, 242
Lsp1109I GCAGC 3 cut(s) 31, 34, 62
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 158, 319
MalI GATC 4 cut(s) 62, 74, 260, 276
MboI GATC 4 cut(s) 60, 72, 258, 274
MfeI CAATTG 1 cut(s) 270
MluCI AATT 3 cut(s) 169, 270, 380
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 5 cut(s) 73, 120, 218, 277, 366
MseI TTAA 2 cut(s) 248, 282
MspCI CTTAAG 2 cut(s) 247, 281
MspR9I CCNGG 2 cut(s) 122, 230
MunI CAATTG 1 cut(s) 270
MvaI CCWGG 2 cut(s) 122, 230
MwoI GCNNNNNNNGC 2 cut(s) 50, 143
NdeII GATC 4 cut(s) 60, 72, 258, 274
PceI AGGCCT 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 3 cut(s) 46, 49, 52
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 120, 228
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 120, 228
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 248, 282
SatI GCNGC 3 cut(s) 45, 48, 51
Sau3AI GATC 4 cut(s) 60, 72, 258, 274
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 122, 230
SetI ASST 8 cut(s) 32, 84, 112, 165, 288, 345, 377, 392
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 82
SmlI CTYRAG 2 cut(s) 247, 281
SmoI CTYRAG 2 cut(s) 247, 281
Sse9I AATT 3 cut(s) 169, 270, 380
SseBI AGGCCT 1 cut(s) 150
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 120, 228
TaaI ACNGT 2 cut(s) 70, 369
TaiI ACGT 1 cut(s) 392
TasI AATT 3 cut(s) 169, 270, 380
Tru1I TTAA 2 cut(s) 248, 282
Tru9I TTAA 2 cut(s) 248, 282
TscAI CASTG 3 cut(s) 75, 82, 268
TseI GCWGC 3 cut(s) 44, 47, 50
TspDTI ATGAA 3 cut(s) 94, 210, 234
TspRI CASTG 3 cut(s) 75, 82, 268
Van91I CCANNNNNTGG 1 cut(s) 91
Vha464I CTTAAG 2 cut(s) 247, 281
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.