MD00G1104100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0016164
Physical Location & Seq
Reverse (-)
21888330 .. 21891678
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1104100.v1.1.491

Sequence Viewer

Length: 282 bp
ATGAATGGAGGGATGCGGACTTGCGCAAAGTTGTTGAGGGCTTCCGAAGCAGCGCTATCGAAATCAGGGACTAGAGGGTTCCACTCAACTGGAGTGAAAAGAATGGGTGGACACGGCCACGATGAACCAGCCTACATGCATGCCAAACACATGTATAACCTGGACCAGATGAAAAACCAGAAGTTGCAGGTGAGCCTTGGAGTGCTCGCCGCCTTCAGCATTGGCGTGGGTGTTCCGATTTGGGCTGTCAATTTCCAACAAAAGAAAACATCATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.02

Weight (kDa)

10.18

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc16I TGCGCA 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 2 cut(s) 16, 210
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 199
AfeI AGCGCT 1 cut(s) 54
AflIII ACRYGT 1 cut(s) 150
AjnI CCWGG 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 207
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 26, 55
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 2 cut(s) 51, 210
BlsI GCNGC 2 cut(s) 52, 211
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 3
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 207
BspACI CCGC 2 cut(s) 16, 210
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 141, 207
BstF5I GGATG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 26, 55
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 3 cut(s) 139, 143, 154
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 89
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 141, 207
CfoI GCGC 2 cut(s) 26, 55
Cfr13I GGNCC 1 cut(s) 163
CviAII CATG 3 cut(s) 136, 140, 151
CviJI RGCY 5 cut(s) 41, 117, 131, 195, 245
CviKI_1 RGCY 5 cut(s) 41, 117, 131, 195, 245
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 139, 143, 154
FaiI YATR 4 cut(s) 137, 141, 152, 156
FaqI GGGAC 1 cut(s) 82
FatI CATG 3 cut(s) 135, 139, 150
Fnu4HI GCNGC 2 cut(s) 51, 210
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 51, 210
FspBI CTAG 1 cut(s) 72
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 2 cut(s) 25, 54
GluI GCNGC 2 cut(s) 51, 210
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 2 cut(s) 26, 55
Hin1II CATG 3 cut(s) 139, 143, 154
Hin6I GCGC 2 cut(s) 24, 53
HinP1I GCGC 2 cut(s) 24, 53
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 46, 237
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 139, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 139, 143, 154
HspAI GCGC 2 cut(s) 24, 53
LpnPI CCDG 9 cut(s) 51, 75, 141, 146, 173, 173, 179, 191, 261
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 2 cut(s) 30, 68
Mph1103I ATGCAT 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 139, 143, 154
NlaIV GGNNCC 1 cut(s) 80
NsbI TGCGCA 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 141
NspI RCATGY 3 cut(s) 139, 143, 154
PaeI GCATGC 1 cut(s) 143
PaqCI CACCTGC 1 cut(s) 178
PciI ACATGT 1 cut(s) 150
PkrI GCNGC 2 cut(s) 52, 211
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 2 cut(s) 51, 210
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 207
SetI ASST 2 cut(s) 162, 192
SfaNI GCATC 1 cut(s) 3
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 224
SphI GCATGC 1 cut(s) 143
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 16, 210
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 212
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 17, 138, 185
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 3 cut(s) 139, 143, 154
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.