Rh7DG478400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
68380215 .. 68383948
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG478400.1

Sequence Viewer

Length: 372 bp
ATGTTATTTCTCTTTTTTTTTATTCAAGGAGGGTTTCTGGTGAAGCAGGTTATCAGTAGCAGAGATTGTTTAGTTCTTGCAATCATGAGTTTGAGCAGTGGGATGAGGACCTGTGCCAAGGTCTTGATGTCTTCAGAAGCACCGCTGTCGAAATCAGCAACTAGGGGGTTCCATTCAACTGGAGTGAAGAGGATGGGTGGACATGGCCATGATGAACCCTTCTACATGCATTCCAAACACATGTATAACTTGGACATGATGAAGCACCAGGCTTTGAAGATGAGCCTTGGAGTGTTCACTGCCTTCAGCATTGGTGTGGCTGTTCCAGTATTTGCTGTCATATTCCAACAGAAGAAAACAGCCTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.53

Weight (kDa)

9.95

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AciI CCGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 205
AcuI CTGAAG 2 cut(s) 117, 289
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 3 cut(s) 26, 177, 277
AjnI CCWGG 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 117, 286
Bse1I ACTGG 2 cut(s) 184, 326
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 117, 286
BseGI GGATG 2 cut(s) 108, 198
BseNI ACTGG 2 cut(s) 184, 326
BshFI GGCC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 207
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 207
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 184, 326
BssECI CCNNGG 2 cut(s) 117, 286
BssT1I CCWWGG 2 cut(s) 117, 286
Bst2UI CCWGG 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 108, 198
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 2 cut(s) 229, 244
BstSCI CCNGG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 108, 198
BtsI GCAGTG 2 cut(s) 103, 297
BtsIMutI CAGTG 2 cut(s) 103, 297
BveI ACCTGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 6 cut(s) 85, 203, 209, 226, 241, 256
CviJI RGCY 5 cut(s) 207, 272, 285, 320, 362
CviKI_1 RGCY 5 cut(s) 207, 272, 285, 320, 362
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 117, 286
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 2 cut(s) 117, 289
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 117, 286
EcoT22I ATGCAT 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 117, 286
FaeI CATG 6 cut(s) 88, 206, 212, 229, 244, 259
FaiI YATR 8 cut(s) 86, 204, 210, 227, 242, 246, 257, 341
FatI CATG 6 cut(s) 84, 202, 208, 225, 240, 255
FokI GGATG 2 cut(s) 115, 205
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 6 cut(s) 88, 206, 212, 229, 244, 259
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 200, 297
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 85, 124
Hpy8I GTNNAC 2 cut(s) 200, 297
HpyAV CCTTC 2 cut(s) 229, 313
HpyCH4V TGCA 2 cut(s) 80, 229
Hsp92II CATG 6 cut(s) 88, 206, 212, 229, 244, 259
LpnPI CCDG 8 cut(s) 23, 32, 124, 165, 254, 281, 339, 351
MaeI CTAG 1 cut(s) 162
MboII GAAGA 4 cut(s) 123, 199, 289, 364
MlsI TGGCCA 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 3 cut(s) 23, 99, 183
Mox20I TGGCCA 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 231
MscI TGGCCA 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 207, 314
Msp20I TGGCCA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 269
NlaIII CATG 6 cut(s) 88, 206, 212, 229, 244, 259
NlaIV GGNNCC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 2 cut(s) 229, 244
PagI TCATGA 1 cut(s) 84
PciI ACATGT 1 cut(s) 240
PctI GAATGC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 108
PscI ACATGT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 365
RseI CAYNNNNRTG 2 cut(s) 207, 314
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 269
SetI ASST 3 cut(s) 51, 113, 123
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 207, 314
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 117, 286
TaqI TCGA 1 cut(s) 149
TscAI CASTG 2 cut(s) 103, 304
TspDTI ATGAA 2 cut(s) 228, 275
TspRI CASTG 2 cut(s) 103, 304
VpaK11BI GGWCC 1 cut(s) 108
XceI RCATGY 2 cut(s) 229, 244
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.